Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15360

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15355 and CSW01_15360 are separated by 45 nucleotidesCSW01_15360 and CSW01_15365 are separated by 275 nucleotides CSW01_15355: CSW01_15355 - integrase, at 300,023 to 301,180 _15355 CSW01_15360: CSW01_15360 - IS5 family transposase ISVch5, at 301,226 to 302,206 _15360 CSW01_15365: CSW01_15365 - hypothetical protein, at 302,482 to 303,705 _15365 Position (kb) 301 302 303Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.378 kb on + strand, within CSW01_15355at 300.396 kb on - strand, within CSW01_15355at 300.414 kb on + strand, within CSW01_15355at 300.414 kb on + strand, within CSW01_15355at 300.414 kb on + strand, within CSW01_15355at 300.422 kb on - strand, within CSW01_15355at 300.426 kb on + strand, within CSW01_15355at 300.505 kb on + strand, within CSW01_15355at 300.506 kb on - strand, within CSW01_15355at 300.546 kb on + strand, within CSW01_15355at 300.552 kb on - strand, within CSW01_15355at 300.554 kb on - strand, within CSW01_15355at 300.606 kb on + strand, within CSW01_15355at 300.750 kb on - strand, within CSW01_15355at 300.804 kb on - strand, within CSW01_15355at 300.841 kb on + strand, within CSW01_15355at 300.947 kb on + strand, within CSW01_15355at 300.947 kb on + strand, within CSW01_15355at 300.947 kb on + strand, within CSW01_15355at 300.952 kb on + strand, within CSW01_15355at 300.955 kb on - strand, within CSW01_15355at 300.955 kb on - strand, within CSW01_15355at 300.965 kb on - strand, within CSW01_15355at 300.965 kb on - strand, within CSW01_15355at 301.016 kb on - strand, within CSW01_15355at 301.059 kb on - strand, within CSW01_15355at 301.120 kb on - strandat 301.127 kb on - strandat 301.135 kb on - strandat 302.315 kb on + strandat 302.315 kb on + strandat 302.320 kb on + strandat 302.378 kb on - strandat 302.416 kb on - strandat 302.502 kb on + strandat 302.541 kb on + strandat 302.549 kb on - strandat 302.559 kb on + strandat 302.568 kb on + strandat 302.589 kb on - strandat 302.629 kb on + strand, within CSW01_15365at 302.682 kb on + strand, within CSW01_15365at 302.697 kb on - strand, within CSW01_15365at 302.850 kb on + strand, within CSW01_15365at 302.868 kb on + strand, within CSW01_15365at 302.883 kb on + strand, within CSW01_15365at 302.883 kb on + strand, within CSW01_15365at 302.886 kb on - strand, within CSW01_15365at 302.891 kb on - strand, within CSW01_15365at 302.891 kb on - strand, within CSW01_15365at 302.950 kb on + strand, within CSW01_15365at 302.996 kb on + strand, within CSW01_15365at 303.107 kb on + strand, within CSW01_15365at 303.130 kb on - strand, within CSW01_15365at 303.141 kb on + strand, within CSW01_15365at 303.141 kb on + strand, within CSW01_15365at 303.159 kb on - strand, within CSW01_15365at 303.193 kb on - strand, within CSW01_15365

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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300,366 + CSW01_15355 0.30 +1.5
300,366 + CSW01_15355 0.30 +1.3
300,366 + CSW01_15355 0.30 +1.0
300,366 + CSW01_15355 0.30 -0.5
300,366 + CSW01_15355 0.30 +1.9
300,366 + CSW01_15355 0.30 -0.9
300,366 + CSW01_15355 0.30 -1.3
300,366 + CSW01_15355 0.30 +0.6
300,366 + CSW01_15355 0.30 -0.9
300,366 + CSW01_15355 0.30 +0.3
300,366 + CSW01_15355 0.30 -3.4
300,366 + CSW01_15355 0.30 -1.5
300,366 + CSW01_15355 0.30 -1.6
300,374 - CSW01_15355 0.30 +0.3
300,374 - CSW01_15355 0.30 +0.3
300,374 - CSW01_15355 0.30 -0.5
300,374 - CSW01_15355 0.30 +0.4
300,374 - CSW01_15355 0.30 +0.1
300,374 - CSW01_15355 0.30 +0.1
300,374 - CSW01_15355 0.30 -1.4
300,374 - CSW01_15355 0.30 -0.7
300,378 + CSW01_15355 0.31 +0.7
300,396 - CSW01_15355 0.32 +0.5
300,414 + CSW01_15355 0.34 -0.9
300,414 + CSW01_15355 0.34 -3.0
300,414 + CSW01_15355 0.34 -0.3
300,422 - CSW01_15355 0.34 -1.2
300,426 + CSW01_15355 0.35 -3.4
300,505 + CSW01_15355 0.42 -1.9
300,506 - CSW01_15355 0.42 -0.6
300,546 + CSW01_15355 0.45 -2.6
300,552 - CSW01_15355 0.46 +0.4
300,554 - CSW01_15355 0.46 -1.0
300,606 + CSW01_15355 0.50 -1.2
300,750 - CSW01_15355 0.63 +0.7
300,804 - CSW01_15355 0.67 -3.2
300,841 + CSW01_15355 0.71 -0.2
300,947 + CSW01_15355 0.80 -2.4
300,947 + CSW01_15355 0.80 +0.6
300,947 + CSW01_15355 0.80 -0.6
300,952 + CSW01_15355 0.80 -3.5
300,955 - CSW01_15355 0.80 +0.9
300,955 - CSW01_15355 0.80 +1.4
300,965 - CSW01_15355 0.81 -2.2
300,965 - CSW01_15355 0.81 -0.9
301,016 - CSW01_15355 0.86 +2.0
301,059 - CSW01_15355 0.89 -2.2
301,120 - -2.0
301,127 - +0.4
301,135 - -2.2
302,315 + -0.1
302,315 + +0.1
302,320 + +1.1
302,378 - +0.3
302,416 - +0.7
302,502 + +1.0
302,541 + +0.7
302,549 - +0.5
302,559 + -3.0
302,568 + -0.9
302,589 - +1.2
302,629 + CSW01_15365 0.12 -1.7
302,682 + CSW01_15365 0.16 +0.8
302,697 - CSW01_15365 0.18 +0.0
302,850 + CSW01_15365 0.30 +0.5
302,868 + CSW01_15365 0.32 -2.7
302,883 + CSW01_15365 0.33 -0.9
302,883 + CSW01_15365 0.33 -0.6
302,886 - CSW01_15365 0.33 -0.9
302,891 - CSW01_15365 0.33 -0.2
302,891 - CSW01_15365 0.33 -0.6
302,950 + CSW01_15365 0.38 +0.4
302,996 + CSW01_15365 0.42 -4.0
303,107 + CSW01_15365 0.51 -1.7
303,130 - CSW01_15365 0.53 -1.1
303,141 + CSW01_15365 0.54 -3.8
303,141 + CSW01_15365 0.54 -2.5
303,159 - CSW01_15365 0.55 -2.9
303,193 - CSW01_15365 0.58 -0.3

Or see this region's nucleotide sequence