Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15135

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15130 and CSW01_15135 are separated by 26 nucleotidesCSW01_15135 and CSW01_15140 are separated by 57 nucleotidesCSW01_15140 and CSW01_15145 are separated by 269 nucleotides CSW01_15130: CSW01_15130 - AraC family transcriptional regulator, at 252,506 to 253,582 _15130 CSW01_15135: CSW01_15135 - TonB-dependent siderophore receptor, at 253,609 to 255,588 _15135 CSW01_15140: CSW01_15140 - DUF2218 domain-containing protein, at 255,646 to 255,966 _15140 CSW01_15145: CSW01_15145 - acetate kinase, at 256,236 to 257,429 _15145 Position (kb) 253 254 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 252.616 kb on + strand, within CSW01_15130at 252.625 kb on + strand, within CSW01_15130at 252.826 kb on + strand, within CSW01_15130at 252.836 kb on + strand, within CSW01_15130at 252.876 kb on - strand, within CSW01_15130at 252.898 kb on - strand, within CSW01_15130at 252.967 kb on - strand, within CSW01_15130at 253.013 kb on - strand, within CSW01_15130at 253.017 kb on + strand, within CSW01_15130at 253.047 kb on + strand, within CSW01_15130at 253.077 kb on + strand, within CSW01_15130at 253.085 kb on - strand, within CSW01_15130at 253.143 kb on + strand, within CSW01_15130at 253.234 kb on - strand, within CSW01_15130at 253.308 kb on - strand, within CSW01_15130at 253.351 kb on - strand, within CSW01_15130at 253.445 kb on + strand, within CSW01_15130at 253.478 kb on + strandat 253.481 kb on - strandat 253.657 kb on + strandat 253.657 kb on + strandat 253.713 kb on + strandat 253.872 kb on + strand, within CSW01_15135at 253.912 kb on - strand, within CSW01_15135at 253.951 kb on - strand, within CSW01_15135at 254.079 kb on + strand, within CSW01_15135at 254.190 kb on - strand, within CSW01_15135at 254.252 kb on + strand, within CSW01_15135at 254.260 kb on - strand, within CSW01_15135at 254.260 kb on - strand, within CSW01_15135at 254.276 kb on + strand, within CSW01_15135at 254.383 kb on - strand, within CSW01_15135at 254.473 kb on - strand, within CSW01_15135at 254.479 kb on - strand, within CSW01_15135at 254.578 kb on - strand, within CSW01_15135at 254.625 kb on + strand, within CSW01_15135at 254.625 kb on + strand, within CSW01_15135at 254.652 kb on - strand, within CSW01_15135at 254.677 kb on + strand, within CSW01_15135at 254.705 kb on + strand, within CSW01_15135at 254.863 kb on + strand, within CSW01_15135at 254.863 kb on + strand, within CSW01_15135at 254.923 kb on - strand, within CSW01_15135at 254.933 kb on - strand, within CSW01_15135at 254.980 kb on + strand, within CSW01_15135at 255.061 kb on - strand, within CSW01_15135at 255.061 kb on - strand, within CSW01_15135at 255.063 kb on + strand, within CSW01_15135at 255.063 kb on + strand, within CSW01_15135at 255.071 kb on - strand, within CSW01_15135at 255.114 kb on - strand, within CSW01_15135at 255.143 kb on + strand, within CSW01_15135at 255.151 kb on - strand, within CSW01_15135at 255.161 kb on - strand, within CSW01_15135at 255.200 kb on - strand, within CSW01_15135at 255.283 kb on + strand, within CSW01_15135at 255.343 kb on - strand, within CSW01_15135at 255.365 kb on - strand, within CSW01_15135at 255.365 kb on - strand, within CSW01_15135at 255.400 kb on - strandat 255.557 kb on + strandat 255.557 kb on + strandat 255.565 kb on - strandat 255.565 kb on - strandat 255.610 kb on - strandat 255.610 kb on - strandat 255.632 kb on - strandat 255.685 kb on + strand, within CSW01_15140at 255.693 kb on - strand, within CSW01_15140at 255.695 kb on - strand, within CSW01_15140at 255.806 kb on + strand, within CSW01_15140at 255.806 kb on + strand, within CSW01_15140at 255.806 kb on + strand, within CSW01_15140at 255.810 kb on + strand, within CSW01_15140at 255.814 kb on - strand, within CSW01_15140at 255.814 kb on - strand, within CSW01_15140at 256.006 kb on - strandat 256.006 kb on - strandat 256.205 kb on + strandat 256.213 kb on - strandat 256.223 kb on + strandat 256.246 kb on + strandat 256.324 kb on + strandat 256.325 kb on - strandat 256.325 kb on - strandat 256.332 kb on - strandat 256.332 kb on - strandat 256.352 kb on + strandat 256.446 kb on + strand, within CSW01_15145at 256.483 kb on + strand, within CSW01_15145at 256.484 kb on - strand, within CSW01_15145at 256.484 kb on - strand, within CSW01_15145at 256.484 kb on - strand, within CSW01_15145at 256.562 kb on - strand, within CSW01_15145

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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252,616 + CSW01_15130 0.10 -1.0
252,625 + CSW01_15130 0.11 -0.3
252,826 + CSW01_15130 0.30 -1.5
252,836 + CSW01_15130 0.31 -0.8
252,876 - CSW01_15130 0.34 -0.5
252,898 - CSW01_15130 0.36 +0.1
252,967 - CSW01_15130 0.43 -1.9
253,013 - CSW01_15130 0.47 +1.0
253,017 + CSW01_15130 0.47 +1.0
253,047 + CSW01_15130 0.50 -2.7
253,077 + CSW01_15130 0.53 +0.4
253,085 - CSW01_15130 0.54 -0.7
253,143 + CSW01_15130 0.59 +0.7
253,234 - CSW01_15130 0.68 -0.2
253,308 - CSW01_15130 0.74 +0.7
253,351 - CSW01_15130 0.78 -1.6
253,445 + CSW01_15130 0.87 -2.4
253,478 + -2.4
253,481 - -1.2
253,657 + -1.8
253,657 + +0.6
253,713 + +0.6
253,872 + CSW01_15135 0.13 +0.5
253,912 - CSW01_15135 0.15 +0.7
253,951 - CSW01_15135 0.17 -2.0
254,079 + CSW01_15135 0.24 +0.9
254,190 - CSW01_15135 0.29 -1.4
254,252 + CSW01_15135 0.32 -2.7
254,260 - CSW01_15135 0.33 -2.2
254,260 - CSW01_15135 0.33 +0.3
254,276 + CSW01_15135 0.34 +1.3
254,383 - CSW01_15135 0.39 +1.3
254,473 - CSW01_15135 0.44 -1.1
254,479 - CSW01_15135 0.44 -0.2
254,578 - CSW01_15135 0.49 +0.7
254,625 + CSW01_15135 0.51 +1.4
254,625 + CSW01_15135 0.51 -2.6
254,652 - CSW01_15135 0.53 +0.9
254,677 + CSW01_15135 0.54 -0.2
254,705 + CSW01_15135 0.55 +0.4
254,863 + CSW01_15135 0.63 +1.7
254,863 + CSW01_15135 0.63 -3.4
254,923 - CSW01_15135 0.66 +1.2
254,933 - CSW01_15135 0.67 +2.4
254,980 + CSW01_15135 0.69 -1.3
255,061 - CSW01_15135 0.73 -0.9
255,061 - CSW01_15135 0.73 +0.6
255,063 + CSW01_15135 0.73 -2.1
255,063 + CSW01_15135 0.73 +0.3
255,071 - CSW01_15135 0.74 +1.2
255,114 - CSW01_15135 0.76 -0.2
255,143 + CSW01_15135 0.77 -0.8
255,151 - CSW01_15135 0.78 +1.6
255,161 - CSW01_15135 0.78 -0.2
255,200 - CSW01_15135 0.80 -3.1
255,283 + CSW01_15135 0.85 +0.3
255,343 - CSW01_15135 0.88 +0.8
255,365 - CSW01_15135 0.89 +1.2
255,365 - CSW01_15135 0.89 -0.9
255,400 - +0.0
255,557 + +1.3
255,557 + +0.5
255,565 - +2.0
255,565 - +0.7
255,610 - -3.6
255,610 - +0.7
255,632 - -1.0
255,685 + CSW01_15140 0.12 -0.4
255,693 - CSW01_15140 0.15 +0.6
255,695 - CSW01_15140 0.15 +1.7
255,806 + CSW01_15140 0.50 -1.6
255,806 + CSW01_15140 0.50 -2.5
255,806 + CSW01_15140 0.50 +0.5
255,810 + CSW01_15140 0.51 +0.3
255,814 - CSW01_15140 0.52 -0.8
255,814 - CSW01_15140 0.52 +1.1
256,006 - -0.8
256,006 - -1.1
256,205 + -0.1
256,213 - -0.4
256,223 + +0.4
256,246 + -0.3
256,324 + +0.7
256,325 - -0.1
256,325 - +1.0
256,332 - +0.5
256,332 - -0.4
256,352 + -0.1
256,446 + CSW01_15145 0.18 -0.6
256,483 + CSW01_15145 0.21 +0.3
256,484 - CSW01_15145 0.21 +0.3
256,484 - CSW01_15145 0.21 -2.8
256,484 - CSW01_15145 0.21 +1.1
256,562 - CSW01_15145 0.27 +0.7

Or see this region's nucleotide sequence