Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15090

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15085 and CSW01_15090 are separated by 9 nucleotidesCSW01_15090 and CSW01_15095 are separated by 75 nucleotides CSW01_15085: CSW01_15085 - lipase, at 242,103 to 243,041 _15085 CSW01_15090: CSW01_15090 - lipase chaperone, at 243,051 to 243,905 _15090 CSW01_15095: CSW01_15095 - protease, at 243,981 to 246,737 _15095 Position (kb) 243 244Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 242.102 kb on - strandat 242.146 kb on - strandat 242.153 kb on - strandat 242.184 kb on + strandat 242.190 kb on + strandat 242.192 kb on - strandat 242.197 kb on - strand, within CSW01_15085at 242.205 kb on - strand, within CSW01_15085at 242.211 kb on - strand, within CSW01_15085at 242.217 kb on + strand, within CSW01_15085at 242.237 kb on - strand, within CSW01_15085at 242.302 kb on + strand, within CSW01_15085at 242.314 kb on + strand, within CSW01_15085at 242.324 kb on + strand, within CSW01_15085at 242.324 kb on + strand, within CSW01_15085at 242.344 kb on - strand, within CSW01_15085at 242.348 kb on + strand, within CSW01_15085at 242.363 kb on + strand, within CSW01_15085at 242.525 kb on - strand, within CSW01_15085at 242.526 kb on - strand, within CSW01_15085at 242.540 kb on - strand, within CSW01_15085at 242.594 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.678 kb on - strand, within CSW01_15085at 242.705 kb on + strand, within CSW01_15085at 242.705 kb on + strand, within CSW01_15085at 242.713 kb on - strand, within CSW01_15085at 242.713 kb on - strand, within CSW01_15085at 242.713 kb on - strand, within CSW01_15085at 242.740 kb on + strand, within CSW01_15085at 242.893 kb on - strand, within CSW01_15085at 242.907 kb on + strand, within CSW01_15085at 242.922 kb on - strand, within CSW01_15085at 242.945 kb on + strand, within CSW01_15085at 242.975 kb on + strandat 242.975 kb on + strandat 242.975 kb on + strandat 242.975 kb on + strandat 242.983 kb on - strandat 243.027 kb on - strandat 243.088 kb on + strandat 243.096 kb on - strandat 243.096 kb on - strandat 243.110 kb on + strandat 243.177 kb on + strand, within CSW01_15090at 243.177 kb on + strand, within CSW01_15090at 243.185 kb on - strand, within CSW01_15090at 243.219 kb on + strand, within CSW01_15090at 243.279 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.334 kb on - strand, within CSW01_15090at 243.334 kb on - strand, within CSW01_15090at 243.348 kb on - strand, within CSW01_15090at 243.389 kb on - strand, within CSW01_15090at 243.467 kb on + strand, within CSW01_15090at 243.555 kb on + strand, within CSW01_15090at 243.577 kb on + strand, within CSW01_15090at 243.577 kb on + strand, within CSW01_15090at 243.633 kb on + strand, within CSW01_15090at 243.641 kb on - strand, within CSW01_15090at 243.672 kb on + strand, within CSW01_15090at 243.672 kb on + strand, within CSW01_15090at 243.680 kb on - strand, within CSW01_15090at 243.706 kb on - strand, within CSW01_15090at 243.706 kb on - strand, within CSW01_15090at 243.708 kb on - strand, within CSW01_15090at 243.799 kb on - strand, within CSW01_15090at 243.842 kb on + strandat 243.842 kb on - strandat 243.908 kb on - strandat 243.951 kb on - strandat 243.953 kb on + strandat 244.033 kb on + strandat 244.055 kb on + strandat 244.157 kb on + strandat 244.243 kb on - strandat 244.355 kb on - strand, within CSW01_15095at 244.355 kb on - strand, within CSW01_15095at 244.445 kb on + strand, within CSW01_15095at 244.453 kb on - strand, within CSW01_15095at 244.455 kb on + strand, within CSW01_15095at 244.494 kb on + strand, within CSW01_15095at 244.509 kb on - strand, within CSW01_15095at 244.602 kb on - strand, within CSW01_15095at 244.602 kb on - strand, within CSW01_15095at 244.663 kb on + strand, within CSW01_15095at 244.671 kb on - strand, within CSW01_15095at 244.671 kb on - strand, within CSW01_15095at 244.706 kb on - strand, within CSW01_15095at 244.772 kb on + strand, within CSW01_15095at 244.795 kb on - strand, within CSW01_15095at 244.795 kb on - strand, within CSW01_15095at 244.795 kb on - strand, within CSW01_15095at 244.805 kb on - strand, within CSW01_15095at 244.905 kb on + strand, within CSW01_15095

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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242,102 - +1.6
242,146 - +1.6
242,153 - +1.1
242,184 + +0.8
242,190 + +0.5
242,192 - +1.0
242,197 - CSW01_15085 0.10 -2.8
242,205 - CSW01_15085 0.11 +0.8
242,211 - CSW01_15085 0.12 +0.4
242,217 + CSW01_15085 0.12 +1.1
242,237 - CSW01_15085 0.14 +1.1
242,302 + CSW01_15085 0.21 +0.1
242,314 + CSW01_15085 0.22 -0.8
242,324 + CSW01_15085 0.24 +1.0
242,324 + CSW01_15085 0.24 -1.2
242,344 - CSW01_15085 0.26 -0.5
242,348 + CSW01_15085 0.26 -4.0
242,363 + CSW01_15085 0.28 -2.8
242,525 - CSW01_15085 0.45 -3.4
242,526 - CSW01_15085 0.45 -0.9
242,540 - CSW01_15085 0.47 +2.1
242,594 - CSW01_15085 0.52 +0.5
242,600 - CSW01_15085 0.53 -1.6
242,600 - CSW01_15085 0.53 +1.3
242,600 - CSW01_15085 0.53 +1.8
242,600 - CSW01_15085 0.53 +2.4
242,600 - CSW01_15085 0.53 +0.9
242,678 - CSW01_15085 0.61 -2.2
242,705 + CSW01_15085 0.64 -0.3
242,705 + CSW01_15085 0.64 -0.8
242,713 - CSW01_15085 0.65 -1.7
242,713 - CSW01_15085 0.65 -2.8
242,713 - CSW01_15085 0.65 -0.1
242,740 + CSW01_15085 0.68 -0.4
242,893 - CSW01_15085 0.84 +0.3
242,907 + CSW01_15085 0.86 +1.5
242,922 - CSW01_15085 0.87 +0.3
242,945 + CSW01_15085 0.90 +0.7
242,975 + -1.3
242,975 + -2.5
242,975 + +0.2
242,975 + -1.2
242,983 - -1.8
243,027 - +0.6
243,088 + +1.6
243,096 - +0.7
243,096 - -1.7
243,110 + -1.9
243,177 + CSW01_15090 0.15 -1.6
243,177 + CSW01_15090 0.15 +0.3
243,185 - CSW01_15090 0.16 -3.1
243,219 + CSW01_15090 0.20 -3.3
243,279 + CSW01_15090 0.27 -2.8
243,326 + CSW01_15090 0.32 +1.6
243,326 + CSW01_15090 0.32 +1.2
243,326 + CSW01_15090 0.32 -0.4
243,326 + CSW01_15090 0.32 +0.1
243,326 + CSW01_15090 0.32 +1.1
243,326 + CSW01_15090 0.32 +0.1
243,334 - CSW01_15090 0.33 -2.3
243,334 - CSW01_15090 0.33 +0.7
243,348 - CSW01_15090 0.35 -0.6
243,389 - CSW01_15090 0.40 +0.8
243,467 + CSW01_15090 0.49 -1.1
243,555 + CSW01_15090 0.59 -3.1
243,577 + CSW01_15090 0.62 -1.4
243,577 + CSW01_15090 0.62 -0.1
243,633 + CSW01_15090 0.68 -0.7
243,641 - CSW01_15090 0.69 -0.9
243,672 + CSW01_15090 0.73 +0.4
243,672 + CSW01_15090 0.73 +1.6
243,680 - CSW01_15090 0.74 -2.0
243,706 - CSW01_15090 0.77 -0.1
243,706 - CSW01_15090 0.77 -2.8
243,708 - CSW01_15090 0.77 +0.4
243,799 - CSW01_15090 0.87 +0.3
243,842 + +1.0
243,842 - -0.4
243,908 - -1.8
243,951 - -0.4
243,953 + +1.2
244,033 + -0.1
244,055 + -2.1
244,157 + -1.2
244,243 - +1.4
244,355 - CSW01_15095 0.14 -0.1
244,355 - CSW01_15095 0.14 +1.2
244,445 + CSW01_15095 0.17 +0.1
244,453 - CSW01_15095 0.17 +0.8
244,455 + CSW01_15095 0.17 -0.8
244,494 + CSW01_15095 0.19 -1.5
244,509 - CSW01_15095 0.19 +0.4
244,602 - CSW01_15095 0.23 -2.6
244,602 - CSW01_15095 0.23 -2.8
244,663 + CSW01_15095 0.25 +0.7
244,671 - CSW01_15095 0.25 -3.5
244,671 - CSW01_15095 0.25 -1.7
244,706 - CSW01_15095 0.26 -0.5
244,772 + CSW01_15095 0.29 +0.3
244,795 - CSW01_15095 0.30 +1.2
244,795 - CSW01_15095 0.30 -0.3
244,795 - CSW01_15095 0.30 -2.2
244,805 - CSW01_15095 0.30 +0.0
244,905 + CSW01_15095 0.34 -0.5

Or see this region's nucleotide sequence