Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14850 and CSW01_14855 overlap by 14 nucleotides CSW01_14855 and CSW01_14860 overlap by 4 nucleotides CSW01_14860 and CSW01_14865 are separated by 3 nucleotides
CSW01_14850: CSW01_14850 - VWA domain-containing protein, at 189,221 to 190,177
_14850
CSW01_14855: CSW01_14855 - DUF4381 domain-containing protein, at 190,164 to 190,652
_14855
CSW01_14860: CSW01_14860 - DUF58 domain-containing protein, at 190,649 to 191,584
_14860
CSW01_14865: CSW01_14865 - MoxR family ATPase, at 191,588 to 192,544
_14865
Position (kb) 190
191
192 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 189.652 kb on + strand, within CSW01_14850 at 189.706 kb on + strand, within CSW01_14850 at 189.740 kb on + strand, within CSW01_14850 at 189.757 kb on - strand, within CSW01_14850 at 189.798 kb on + strand, within CSW01_14850 at 189.806 kb on - strand, within CSW01_14850 at 189.824 kb on - strand, within CSW01_14850 at 189.849 kb on - strand, within CSW01_14850 at 189.849 kb on - strand, within CSW01_14850 at 189.916 kb on + strand, within CSW01_14850 at 189.924 kb on - strand, within CSW01_14850 at 189.924 kb on - strand, within CSW01_14850 at 190.045 kb on + strand, within CSW01_14850 at 190.062 kb on + strand, within CSW01_14850 at 190.119 kb on + strand at 190.119 kb on + strand at 190.119 kb on + strand at 190.119 kb on + strand at 190.119 kb on + strand at 190.127 kb on - strand at 190.127 kb on - strand at 190.127 kb on - strand at 190.224 kb on + strand, within CSW01_14855 at 190.247 kb on + strand, within CSW01_14855 at 190.247 kb on + strand, within CSW01_14855 at 190.274 kb on + strand, within CSW01_14855 at 190.275 kb on + strand, within CSW01_14855 at 190.388 kb on + strand, within CSW01_14855 at 190.390 kb on + strand, within CSW01_14855 at 190.577 kb on - strand, within CSW01_14855 at 190.578 kb on - strand, within CSW01_14855 at 190.578 kb on - strand, within CSW01_14855 at 190.578 kb on - strand, within CSW01_14855 at 190.605 kb on - strand at 190.607 kb on + strand at 190.615 kb on - strand at 190.615 kb on - strand at 190.615 kb on - strand at 190.615 kb on - strand at 190.845 kb on - strand, within CSW01_14860 at 190.875 kb on - strand, within CSW01_14860 at 190.916 kb on + strand, within CSW01_14860 at 190.957 kb on - strand, within CSW01_14860 at 191.012 kb on - strand, within CSW01_14860 at 191.021 kb on - strand, within CSW01_14860 at 191.023 kb on + strand, within CSW01_14860 at 191.023 kb on + strand, within CSW01_14860 at 191.040 kb on - strand, within CSW01_14860 at 191.080 kb on + strand, within CSW01_14860 at 191.087 kb on - strand, within CSW01_14860 at 191.286 kb on + strand, within CSW01_14860 at 191.316 kb on + strand, within CSW01_14860 at 191.326 kb on + strand, within CSW01_14860 at 191.336 kb on + strand, within CSW01_14860 at 191.344 kb on - strand, within CSW01_14860 at 191.344 kb on - strand, within CSW01_14860 at 191.509 kb on + strand at 191.543 kb on - strand at 191.564 kb on - strand at 191.595 kb on + strand at 191.689 kb on - strand, within CSW01_14865 at 191.892 kb on + strand, within CSW01_14865 at 191.930 kb on - strand, within CSW01_14865 at 192.034 kb on - strand, within CSW01_14865 at 192.082 kb on + strand, within CSW01_14865 at 192.150 kb on + strand, within CSW01_14865 at 192.150 kb on + strand, within CSW01_14865 at 192.218 kb on + strand, within CSW01_14865 at 192.249 kb on - strand, within CSW01_14865 at 192.334 kb on + strand, within CSW01_14865 at 192.433 kb on + strand, within CSW01_14865 at 192.510 kb on - strand at 192.573 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 189,652 + CSW01_14850 0.45 +2.0 189,706 + CSW01_14850 0.51 -2.4 189,740 + CSW01_14850 0.54 +1.7 189,757 - CSW01_14850 0.56 +1.6 189,798 + CSW01_14850 0.60 -0.2 189,806 - CSW01_14850 0.61 -1.9 189,824 - CSW01_14850 0.63 +0.9 189,849 - CSW01_14850 0.66 -1.5 189,849 - CSW01_14850 0.66 -0.7 189,916 + CSW01_14850 0.73 +0.2 189,924 - CSW01_14850 0.73 -2.4 189,924 - CSW01_14850 0.73 +1.4 190,045 + CSW01_14850 0.86 -3.5 190,062 + CSW01_14850 0.88 +0.9 190,119 + -2.5 190,119 + +1.0 190,119 + +0.1 190,119 + -0.1 190,119 + -0.8 190,127 - +0.1 190,127 - -1.3 190,127 - -2.5 190,224 + CSW01_14855 0.12 +0.7 190,247 + CSW01_14855 0.17 -0.2 190,247 + CSW01_14855 0.17 +1.4 190,274 + CSW01_14855 0.22 -0.2 190,275 + CSW01_14855 0.23 -1.5 190,388 + CSW01_14855 0.46 -1.4 190,390 + CSW01_14855 0.46 +1.0 190,577 - CSW01_14855 0.84 +0.2 190,578 - CSW01_14855 0.85 +0.3 190,578 - CSW01_14855 0.85 +0.8 190,578 - CSW01_14855 0.85 -0.4 190,605 - -1.5 190,607 + -2.5 190,615 - +0.9 190,615 - -4.1 190,615 - +0.4 190,615 - +0.6 190,845 - CSW01_14860 0.21 +3.0 190,875 - CSW01_14860 0.24 +0.5 190,916 + CSW01_14860 0.29 +0.8 190,957 - CSW01_14860 0.33 +0.2 191,012 - CSW01_14860 0.39 +1.1 191,021 - CSW01_14860 0.40 -0.4 191,023 + CSW01_14860 0.40 -2.4 191,023 + CSW01_14860 0.40 -3.0 191,040 - CSW01_14860 0.42 +2.1 191,080 + CSW01_14860 0.46 +0.8 191,087 - CSW01_14860 0.47 +0.9 191,286 + CSW01_14860 0.68 -2.4 191,316 + CSW01_14860 0.71 -1.4 191,326 + CSW01_14860 0.72 -2.4 191,336 + CSW01_14860 0.73 -1.1 191,344 - CSW01_14860 0.74 -1.1 191,344 - CSW01_14860 0.74 +1.2 191,509 + -2.0 191,543 - +0.1 191,564 - -1.2 191,595 + +1.8 191,689 - CSW01_14865 0.11 -0.0 191,892 + CSW01_14865 0.32 +0.5 191,930 - CSW01_14865 0.36 -0.8 192,034 - CSW01_14865 0.47 -1.5 192,082 + CSW01_14865 0.52 +0.3 192,150 + CSW01_14865 0.59 +0.1 192,150 + CSW01_14865 0.59 +0.5 192,218 + CSW01_14865 0.66 +1.1 192,249 - CSW01_14865 0.69 -1.3 192,334 + CSW01_14865 0.78 +0.8 192,433 + CSW01_14865 0.88 -0.2 192,510 - -2.4 192,573 + -0.3
Or see this region's nucleotide sequence