Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14660

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14655 and CSW01_14660 are separated by 54 nucleotidesCSW01_14660 and CSW01_14665 are separated by 138 nucleotides CSW01_14655: CSW01_14655 - ribose ABC transporter permease, at 143,634 to 144,635 _14655 CSW01_14660: CSW01_14660 - ribose ABC transporter substrate-binding protein RbsB, at 144,690 to 145,574 _14660 CSW01_14665: CSW01_14665 - ribokinase, at 145,713 to 146,633 _14665 Position (kb) 144 145 146Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 143.710 kb on - strandat 143.710 kb on - strandat 143.710 kb on - strandat 143.796 kb on + strand, within CSW01_14655at 143.804 kb on - strand, within CSW01_14655at 143.832 kb on - strand, within CSW01_14655at 143.852 kb on + strand, within CSW01_14655at 143.853 kb on + strand, within CSW01_14655at 143.853 kb on + strand, within CSW01_14655at 143.860 kb on - strand, within CSW01_14655at 143.860 kb on - strand, within CSW01_14655at 143.913 kb on - strand, within CSW01_14655at 143.943 kb on - strand, within CSW01_14655at 143.943 kb on - strand, within CSW01_14655at 143.943 kb on - strand, within CSW01_14655at 143.992 kb on + strand, within CSW01_14655at 144.039 kb on + strand, within CSW01_14655at 144.047 kb on - strand, within CSW01_14655at 144.047 kb on - strand, within CSW01_14655at 144.095 kb on + strand, within CSW01_14655at 144.095 kb on + strand, within CSW01_14655at 144.103 kb on - strand, within CSW01_14655at 144.103 kb on - strand, within CSW01_14655at 144.148 kb on + strand, within CSW01_14655at 144.148 kb on + strand, within CSW01_14655at 144.148 kb on + strand, within CSW01_14655at 144.156 kb on - strand, within CSW01_14655at 144.158 kb on + strand, within CSW01_14655at 144.158 kb on + strand, within CSW01_14655at 144.176 kb on - strand, within CSW01_14655at 144.188 kb on + strand, within CSW01_14655at 144.213 kb on + strand, within CSW01_14655at 144.299 kb on + strand, within CSW01_14655at 144.314 kb on - strand, within CSW01_14655at 144.344 kb on + strand, within CSW01_14655at 144.392 kb on + strand, within CSW01_14655at 144.405 kb on - strand, within CSW01_14655at 144.461 kb on + strand, within CSW01_14655at 144.511 kb on + strand, within CSW01_14655at 144.566 kb on - strandat 144.654 kb on - strandat 144.657 kb on + strandat 144.670 kb on - strandat 144.770 kb on - strandat 144.800 kb on - strand, within CSW01_14660at 144.856 kb on + strand, within CSW01_14660at 144.870 kb on + strand, within CSW01_14660at 144.919 kb on + strand, within CSW01_14660at 144.927 kb on - strand, within CSW01_14660at 144.927 kb on - strand, within CSW01_14660at 144.927 kb on - strand, within CSW01_14660at 145.017 kb on + strand, within CSW01_14660at 145.168 kb on + strand, within CSW01_14660at 145.262 kb on + strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.278 kb on - strand, within CSW01_14660at 145.358 kb on - strand, within CSW01_14660at 145.467 kb on - strand, within CSW01_14660at 145.481 kb on - strand, within CSW01_14660at 145.500 kb on - strandat 145.586 kb on - strandat 145.658 kb on + strandat 145.666 kb on - strandat 145.699 kb on - strandat 145.701 kb on + strandat 145.711 kb on - strandat 145.711 kb on - strandat 145.747 kb on - strandat 145.752 kb on - strandat 145.930 kb on + strand, within CSW01_14665at 145.960 kb on + strand, within CSW01_14665at 146.019 kb on + strand, within CSW01_14665at 146.019 kb on + strand, within CSW01_14665at 146.027 kb on - strand, within CSW01_14665at 146.041 kb on + strand, within CSW01_14665at 146.057 kb on - strand, within CSW01_14665at 146.134 kb on - strand, within CSW01_14665at 146.220 kb on - strand, within CSW01_14665at 146.242 kb on + strand, within CSW01_14665at 146.247 kb on + strand, within CSW01_14665at 146.248 kb on - strand, within CSW01_14665at 146.269 kb on - strand, within CSW01_14665at 146.334 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.349 kb on + strand, within CSW01_14665at 146.350 kb on - strand, within CSW01_14665at 146.365 kb on + strand, within CSW01_14665at 146.393 kb on - strand, within CSW01_14665at 146.394 kb on - strand, within CSW01_14665at 146.463 kb on + strand, within CSW01_14665at 146.479 kb on - strand, within CSW01_14665at 146.487 kb on - strand, within CSW01_14665at 146.487 kb on - strand, within CSW01_14665at 146.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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143,710 - -2.9
143,710 - -2.5
143,710 - -3.0
143,796 + CSW01_14655 0.16 +1.3
143,804 - CSW01_14655 0.17 +0.2
143,832 - CSW01_14655 0.20 +0.1
143,852 + CSW01_14655 0.22 -1.0
143,853 + CSW01_14655 0.22 -1.8
143,853 + CSW01_14655 0.22 +2.9
143,860 - CSW01_14655 0.23 -1.9
143,860 - CSW01_14655 0.23 -0.3
143,913 - CSW01_14655 0.28 +0.9
143,943 - CSW01_14655 0.31 -2.2
143,943 - CSW01_14655 0.31 -0.2
143,943 - CSW01_14655 0.31 -2.2
143,992 + CSW01_14655 0.36 +1.8
144,039 + CSW01_14655 0.40 +0.2
144,047 - CSW01_14655 0.41 -2.1
144,047 - CSW01_14655 0.41 +0.2
144,095 + CSW01_14655 0.46 +0.2
144,095 + CSW01_14655 0.46 +0.2
144,103 - CSW01_14655 0.47 +1.1
144,103 - CSW01_14655 0.47 -2.3
144,148 + CSW01_14655 0.51 +0.8
144,148 + CSW01_14655 0.51 -0.4
144,148 + CSW01_14655 0.51 +1.8
144,156 - CSW01_14655 0.52 +1.3
144,158 + CSW01_14655 0.52 +1.1
144,158 + CSW01_14655 0.52 +0.3
144,176 - CSW01_14655 0.54 -0.5
144,188 + CSW01_14655 0.55 +0.8
144,213 + CSW01_14655 0.58 +2.1
144,299 + CSW01_14655 0.66 -1.3
144,314 - CSW01_14655 0.68 -0.2
144,344 + CSW01_14655 0.71 -3.0
144,392 + CSW01_14655 0.76 +0.1
144,405 - CSW01_14655 0.77 +1.6
144,461 + CSW01_14655 0.83 +0.3
144,511 + CSW01_14655 0.88 +1.1
144,566 - +1.6
144,654 - -4.1
144,657 + -3.0
144,670 - -0.8
144,770 - +0.2
144,800 - CSW01_14660 0.12 +0.1
144,856 + CSW01_14660 0.19 +0.2
144,870 + CSW01_14660 0.20 +1.1
144,919 + CSW01_14660 0.26 -2.5
144,927 - CSW01_14660 0.27 -2.8
144,927 - CSW01_14660 0.27 +0.2
144,927 - CSW01_14660 0.27 -0.2
145,017 + CSW01_14660 0.37 -2.1
145,168 + CSW01_14660 0.54 -0.1
145,262 + CSW01_14660 0.65 +0.2
145,270 - CSW01_14660 0.66 +0.8
145,270 - CSW01_14660 0.66 +1.9
145,270 - CSW01_14660 0.66 -1.9
145,270 - CSW01_14660 0.66 +0.6
145,270 - CSW01_14660 0.66 +0.9
145,278 - CSW01_14660 0.66 +0.1
145,358 - CSW01_14660 0.75 +0.9
145,467 - CSW01_14660 0.88 +1.0
145,481 - CSW01_14660 0.89 +1.5
145,500 - -0.6
145,586 - -1.5
145,658 + +0.1
145,666 - -0.9
145,699 - -1.0
145,701 + -0.5
145,711 - +1.7
145,711 - -3.0
145,747 - +0.5
145,752 - -1.2
145,930 + CSW01_14665 0.24 +0.1
145,960 + CSW01_14665 0.27 +0.4
146,019 + CSW01_14665 0.33 +0.7
146,019 + CSW01_14665 0.33 -2.1
146,027 - CSW01_14665 0.34 -2.7
146,041 + CSW01_14665 0.36 -1.3
146,057 - CSW01_14665 0.37 -2.6
146,134 - CSW01_14665 0.46 -2.7
146,220 - CSW01_14665 0.55 -1.9
146,242 + CSW01_14665 0.57 -0.7
146,247 + CSW01_14665 0.58 -0.3
146,248 - CSW01_14665 0.58 -2.6
146,269 - CSW01_14665 0.60 +0.3
146,334 + CSW01_14665 0.67 +0.1
146,342 + CSW01_14665 0.68 -2.7
146,342 + CSW01_14665 0.68 +0.3
146,342 + CSW01_14665 0.68 -0.5
146,342 + CSW01_14665 0.68 -1.6
146,342 + CSW01_14665 0.68 -0.6
146,349 + CSW01_14665 0.69 +0.4
146,350 - CSW01_14665 0.69 +0.6
146,365 + CSW01_14665 0.71 +0.3
146,393 - CSW01_14665 0.74 -0.1
146,394 - CSW01_14665 0.74 -0.5
146,463 + CSW01_14665 0.81 +0.1
146,479 - CSW01_14665 0.83 +0.5
146,487 - CSW01_14665 0.84 +0.8
146,487 - CSW01_14665 0.84 +0.3
146,543 - -2.6

Or see this region's nucleotide sequence