Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14410 and CSW01_14415 are separated by 304 nucleotides CSW01_14415 and CSW01_14420 are separated by 191 nucleotides
CSW01_14410: CSW01_14410 - sodium-independent anion transporter, at 86,657 to 88,318
_14410
CSW01_14415: CSW01_14415 - 1,4-alpha-glucan branching protein, at 88,623 to 88,955
_14415
CSW01_14420: CSW01_14420 - peptidase M23, at 89,147 to 90,439
_14420
Position (kb) 88
89 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 87.626 kb on + strand, within CSW01_14410 at 87.646 kb on + strand, within CSW01_14410 at 87.654 kb on - strand, within CSW01_14410 at 87.670 kb on + strand, within CSW01_14410 at 87.678 kb on - strand, within CSW01_14410 at 87.699 kb on - strand, within CSW01_14410 at 87.721 kb on - strand, within CSW01_14410 at 87.722 kb on - strand, within CSW01_14410 at 87.782 kb on + strand, within CSW01_14410 at 87.782 kb on + strand, within CSW01_14410 at 87.782 kb on - strand, within CSW01_14410 at 87.791 kb on - strand, within CSW01_14410 at 87.796 kb on + strand, within CSW01_14410 at 87.804 kb on - strand, within CSW01_14410 at 87.806 kb on - strand, within CSW01_14410 at 87.864 kb on + strand, within CSW01_14410 at 87.872 kb on - strand, within CSW01_14410 at 87.872 kb on - strand, within CSW01_14410 at 87.896 kb on + strand, within CSW01_14410 at 87.896 kb on + strand, within CSW01_14410 at 87.913 kb on - strand, within CSW01_14410 at 87.992 kb on + strand, within CSW01_14410 at 87.992 kb on + strand, within CSW01_14410 at 88.000 kb on - strand, within CSW01_14410 at 88.000 kb on - strand, within CSW01_14410 at 88.006 kb on + strand, within CSW01_14410 at 88.025 kb on - strand, within CSW01_14410 at 88.060 kb on - strand, within CSW01_14410 at 88.094 kb on + strand, within CSW01_14410 at 88.275 kb on + strand at 88.381 kb on + strand at 88.393 kb on - strand at 88.491 kb on + strand at 88.874 kb on - strand, within CSW01_14415 at 88.997 kb on + strand at 88.997 kb on + strand at 88.997 kb on + strand at 88.997 kb on + strand at 89.083 kb on + strand at 89.110 kb on - strand at 89.110 kb on - strand at 89.122 kb on - strand at 89.262 kb on - strand at 89.267 kb on + strand at 89.322 kb on - strand, within CSW01_14420 at 89.334 kb on + strand, within CSW01_14420 at 89.334 kb on + strand, within CSW01_14420 at 89.352 kb on - strand, within CSW01_14420 at 89.352 kb on - strand, within CSW01_14420 at 89.372 kb on + strand, within CSW01_14420 at 89.395 kb on + strand, within CSW01_14420 at 89.494 kb on + strand, within CSW01_14420 at 89.576 kb on + strand, within CSW01_14420 at 89.584 kb on - strand, within CSW01_14420 at 89.908 kb on + strand, within CSW01_14420
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 87,626 + CSW01_14410 0.58 +0.5 87,646 + CSW01_14410 0.60 -0.3 87,654 - CSW01_14410 0.60 +1.3 87,670 + CSW01_14410 0.61 -0.2 87,678 - CSW01_14410 0.61 +1.6 87,699 - CSW01_14410 0.63 -0.1 87,721 - CSW01_14410 0.64 -2.9 87,722 - CSW01_14410 0.64 +0.7 87,782 + CSW01_14410 0.68 +0.4 87,782 + CSW01_14410 0.68 -0.5 87,782 - CSW01_14410 0.68 +0.8 87,791 - CSW01_14410 0.68 -1.4 87,796 + CSW01_14410 0.69 +1.6 87,804 - CSW01_14410 0.69 +0.6 87,806 - CSW01_14410 0.69 -0.3 87,864 + CSW01_14410 0.73 -1.0 87,872 - CSW01_14410 0.73 +0.9 87,872 - CSW01_14410 0.73 -1.5 87,896 + CSW01_14410 0.75 -1.4 87,896 + CSW01_14410 0.75 -2.7 87,913 - CSW01_14410 0.76 -0.4 87,992 + CSW01_14410 0.80 +0.3 87,992 + CSW01_14410 0.80 +0.2 88,000 - CSW01_14410 0.81 +0.7 88,000 - CSW01_14410 0.81 -0.5 88,006 + CSW01_14410 0.81 -2.7 88,025 - CSW01_14410 0.82 -0.0 88,060 - CSW01_14410 0.84 +1.0 88,094 + CSW01_14410 0.86 +0.7 88,275 + -0.9 88,381 + +2.0 88,393 - +1.1 88,491 + +0.3 88,874 - CSW01_14415 0.75 -3.1 88,997 + -3.2 88,997 + -1.5 88,997 + -1.8 88,997 + +1.5 89,083 + +1.0 89,110 - -2.4 89,110 - -0.7 89,122 - -1.0 89,262 - -2.0 89,267 + -0.5 89,322 - CSW01_14420 0.14 -2.0 89,334 + CSW01_14420 0.14 +1.9 89,334 + CSW01_14420 0.14 -0.5 89,352 - CSW01_14420 0.16 +2.0 89,352 - CSW01_14420 0.16 +0.2 89,372 + CSW01_14420 0.17 +1.0 89,395 + CSW01_14420 0.19 -4.0 89,494 + CSW01_14420 0.27 +1.6 89,576 + CSW01_14420 0.33 +0.9 89,584 - CSW01_14420 0.34 +0.1 89,908 + CSW01_14420 0.59 +0.8
Or see this region's nucleotide sequence