Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14275 and CSW01_14280 overlap by 1 nucleotides CSW01_14280 and CSW01_14285 are separated by 134 nucleotides
CSW01_14275: CSW01_14275 - HlyD family secretion protein, at 54,928 to 56,058
_14275
CSW01_14280: CSW01_14280 - DUF3302 domain-containing protein, at 56,058 to 56,447
_14280
CSW01_14285: CSW01_14285 - GGDEF domain-containing protein, at 56,582 to 58,162
_14285
Position (kb) 56
57 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 55.134 kb on - strand, within CSW01_14275 at 55.149 kb on - strand, within CSW01_14275 at 55.198 kb on - strand, within CSW01_14275 at 55.283 kb on + strand, within CSW01_14275 at 55.286 kb on - strand, within CSW01_14275 at 55.291 kb on - strand, within CSW01_14275 at 55.331 kb on + strand, within CSW01_14275 at 55.432 kb on + strand, within CSW01_14275 at 55.445 kb on - strand, within CSW01_14275 at 55.447 kb on + strand, within CSW01_14275 at 55.519 kb on - strand, within CSW01_14275 at 55.650 kb on - strand, within CSW01_14275 at 55.703 kb on - strand, within CSW01_14275 at 55.704 kb on - strand, within CSW01_14275 at 55.710 kb on - strand, within CSW01_14275 at 55.722 kb on + strand, within CSW01_14275 at 55.790 kb on + strand, within CSW01_14275 at 55.791 kb on - strand, within CSW01_14275 at 55.796 kb on - strand, within CSW01_14275 at 55.797 kb on - strand, within CSW01_14275 at 55.896 kb on + strand, within CSW01_14275 at 55.960 kb on - strand at 55.967 kb on - strand at 56.030 kb on + strand at 56.103 kb on - strand, within CSW01_14280 at 56.130 kb on + strand, within CSW01_14280 at 56.226 kb on + strand, within CSW01_14280 at 56.249 kb on - strand, within CSW01_14280 at 56.386 kb on - strand, within CSW01_14280 at 56.386 kb on - strand, within CSW01_14280 at 56.545 kb on + strand at 56.573 kb on - strand at 56.624 kb on + strand at 56.624 kb on + strand at 56.632 kb on - strand at 56.632 kb on - strand at 56.632 kb on - strand at 56.632 kb on - strand at 56.678 kb on + strand at 56.996 kb on + strand, within CSW01_14285 at 57.010 kb on + strand, within CSW01_14285 at 57.018 kb on - strand, within CSW01_14285 at 57.051 kb on - strand, within CSW01_14285 at 57.086 kb on - strand, within CSW01_14285 at 57.257 kb on - strand, within CSW01_14285 at 57.257 kb on - strand, within CSW01_14285 at 57.302 kb on - strand, within CSW01_14285 at 57.302 kb on - strand, within CSW01_14285 at 57.368 kb on - strand, within CSW01_14285 at 57.373 kb on - strand, within CSW01_14285 at 57.415 kb on + strand, within CSW01_14285
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 55,134 - CSW01_14275 0.18 -0.1 55,149 - CSW01_14275 0.20 +0.1 55,198 - CSW01_14275 0.24 +1.1 55,283 + CSW01_14275 0.31 -0.1 55,286 - CSW01_14275 0.32 +1.5 55,291 - CSW01_14275 0.32 -0.5 55,331 + CSW01_14275 0.36 -2.1 55,432 + CSW01_14275 0.45 +0.4 55,445 - CSW01_14275 0.46 +0.0 55,447 + CSW01_14275 0.46 +0.4 55,519 - CSW01_14275 0.52 +2.1 55,650 - CSW01_14275 0.64 +1.9 55,703 - CSW01_14275 0.69 -0.8 55,704 - CSW01_14275 0.69 +0.7 55,710 - CSW01_14275 0.69 -2.7 55,722 + CSW01_14275 0.70 +2.0 55,790 + CSW01_14275 0.76 -1.5 55,791 - CSW01_14275 0.76 +0.4 55,796 - CSW01_14275 0.77 -2.6 55,797 - CSW01_14275 0.77 +0.0 55,896 + CSW01_14275 0.86 +0.7 55,960 - -2.5 55,967 - -0.7 56,030 + +0.3 56,103 - CSW01_14280 0.12 -3.0 56,130 + CSW01_14280 0.18 -3.3 56,226 + CSW01_14280 0.43 -0.8 56,249 - CSW01_14280 0.49 -0.3 56,386 - CSW01_14280 0.84 -3.1 56,386 - CSW01_14280 0.84 +1.1 56,545 + +0.1 56,573 - +2.0 56,624 + +1.3 56,624 + +0.5 56,632 - -0.3 56,632 - -4.1 56,632 - +0.8 56,632 - +1.4 56,678 + +0.3 56,996 + CSW01_14285 0.26 +0.6 57,010 + CSW01_14285 0.27 +0.7 57,018 - CSW01_14285 0.28 -2.7 57,051 - CSW01_14285 0.30 +0.2 57,086 - CSW01_14285 0.32 +0.5 57,257 - CSW01_14285 0.43 -0.8 57,257 - CSW01_14285 0.43 +0.8 57,302 - CSW01_14285 0.46 +1.4 57,302 - CSW01_14285 0.46 +0.8 57,368 - CSW01_14285 0.50 -3.1 57,373 - CSW01_14285 0.50 +1.5 57,415 + CSW01_14285 0.53 +2.9
Or see this region's nucleotide sequence