Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14095

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14090 and CSW01_14095 are separated by 103 nucleotidesCSW01_14095 and CSW01_14100 are separated by 2 nucleotidesCSW01_14100 and CSW01_14105 are separated by 80 nucleotidesCSW01_14105 and CSW01_14110 are separated by 66 nucleotides CSW01_14090: CSW01_14090 - NAD(P)-dependent oxidoreductase, at 5,645 to 6,520 _14090 CSW01_14095: CSW01_14095 - methyl-accepting chemotaxis protein, at 6,624 to 8,285 _14095 CSW01_14100: CSW01_14100 - hypothetical protein, at 8,288 to 8,482 _14100 CSW01_14105: CSW01_14105 - hypothetical protein, at 8,563 to 8,919 _14105 CSW01_14110: CSW01_14110 - HTH-type transcriptional regulator MalT, at 8,986 to 11,751 _14110 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5.758 kb on - strand, within CSW01_14090at 5.830 kb on - strand, within CSW01_14090at 5.860 kb on + strand, within CSW01_14090at 5.912 kb on + strand, within CSW01_14090at 5.934 kb on + strand, within CSW01_14090at 5.948 kb on + strand, within CSW01_14090at 5.949 kb on - strand, within CSW01_14090at 5.956 kb on + strand, within CSW01_14090at 5.964 kb on - strand, within CSW01_14090at 5.964 kb on - strand, within CSW01_14090at 6.019 kb on + strand, within CSW01_14090at 6.079 kb on - strand, within CSW01_14090at 6.086 kb on + strand, within CSW01_14090at 6.138 kb on + strand, within CSW01_14090at 6.146 kb on - strand, within CSW01_14090at 6.229 kb on - strand, within CSW01_14090at 6.240 kb on + strand, within CSW01_14090at 6.398 kb on + strand, within CSW01_14090at 6.404 kb on + strand, within CSW01_14090at 6.406 kb on - strand, within CSW01_14090at 6.460 kb on - strandat 6.480 kb on - strandat 6.485 kb on - strandat 6.485 kb on - strandat 6.569 kb on + strandat 6.569 kb on + strandat 6.577 kb on - strandat 6.586 kb on + strandat 6.609 kb on - strandat 6.671 kb on + strandat 6.704 kb on - strandat 6.785 kb on - strandat 6.816 kb on + strand, within CSW01_14095at 6.818 kb on + strand, within CSW01_14095at 6.818 kb on + strand, within CSW01_14095at 6.895 kb on - strand, within CSW01_14095at 6.943 kb on + strand, within CSW01_14095at 6.969 kb on + strand, within CSW01_14095at 7.013 kb on - strand, within CSW01_14095at 7.021 kb on - strand, within CSW01_14095at 7.041 kb on + strand, within CSW01_14095at 7.063 kb on + strand, within CSW01_14095at 7.118 kb on - strand, within CSW01_14095at 7.203 kb on + strand, within CSW01_14095at 7.203 kb on + strand, within CSW01_14095at 7.203 kb on + strand, within CSW01_14095at 7.203 kb on + strand, within CSW01_14095at 7.211 kb on - strand, within CSW01_14095at 7.211 kb on - strand, within CSW01_14095at 7.221 kb on - strand, within CSW01_14095at 7.414 kb on + strand, within CSW01_14095at 7.477 kb on - strand, within CSW01_14095at 7.642 kb on + strand, within CSW01_14095at 7.675 kb on - strand, within CSW01_14095at 7.684 kb on + strand, within CSW01_14095at 7.686 kb on + strand, within CSW01_14095at 7.689 kb on - strand, within CSW01_14095at 7.696 kb on + strand, within CSW01_14095at 7.790 kb on + strand, within CSW01_14095at 7.790 kb on + strand, within CSW01_14095at 7.798 kb on - strand, within CSW01_14095at 7.973 kb on - strand, within CSW01_14095at 7.984 kb on - strand, within CSW01_14095at 8.082 kb on - strand, within CSW01_14095at 8.171 kb on + strandat 8.171 kb on + strandat 8.217 kb on + strandat 8.222 kb on + strandat 8.309 kb on + strand, within CSW01_14100at 8.331 kb on - strand, within CSW01_14100at 8.347 kb on - strand, within CSW01_14100at 8.455 kb on + strand, within CSW01_14100at 8.509 kb on + strandat 8.521 kb on + strandat 8.576 kb on - strandat 8.792 kb on - strand, within CSW01_14105at 9.001 kb on - strandat 9.025 kb on - strandat 9.106 kb on - strandat 9.148 kb on - strandat 9.152 kb on - strandat 9.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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5,758 - CSW01_14090 0.13 +0.9
5,830 - CSW01_14090 0.21 +0.3
5,860 + CSW01_14090 0.25 -0.0
5,912 + CSW01_14090 0.30 +2.0
5,934 + CSW01_14090 0.33 +0.7
5,948 + CSW01_14090 0.35 -2.2
5,949 - CSW01_14090 0.35 -1.3
5,956 + CSW01_14090 0.36 +2.0
5,964 - CSW01_14090 0.36 +0.3
5,964 - CSW01_14090 0.36 +0.4
6,019 + CSW01_14090 0.43 -0.1
6,079 - CSW01_14090 0.50 -0.5
6,086 + CSW01_14090 0.50 -4.4
6,138 + CSW01_14090 0.56 -0.8
6,146 - CSW01_14090 0.57 +0.7
6,229 - CSW01_14090 0.67 +1.6
6,240 + CSW01_14090 0.68 +1.1
6,398 + CSW01_14090 0.86 +0.7
6,404 + CSW01_14090 0.87 -0.8
6,406 - CSW01_14090 0.87 -3.0
6,460 - +1.3
6,480 - +0.1
6,485 - -1.6
6,485 - -2.2
6,569 + +0.1
6,569 + +0.5
6,577 - -0.9
6,586 + +1.6
6,609 - -3.4
6,671 + +1.1
6,704 - +0.3
6,785 - +1.3
6,816 + CSW01_14095 0.12 -3.5
6,818 + CSW01_14095 0.12 +1.4
6,818 + CSW01_14095 0.12 +1.2
6,895 - CSW01_14095 0.16 +1.4
6,943 + CSW01_14095 0.19 -0.5
6,969 + CSW01_14095 0.21 -0.5
7,013 - CSW01_14095 0.23 -0.2
7,021 - CSW01_14095 0.24 -1.1
7,041 + CSW01_14095 0.25 -0.6
7,063 + CSW01_14095 0.26 -1.3
7,118 - CSW01_14095 0.30 -0.3
7,203 + CSW01_14095 0.35 +0.6
7,203 + CSW01_14095 0.35 -0.8
7,203 + CSW01_14095 0.35 -1.4
7,203 + CSW01_14095 0.35 -1.5
7,211 - CSW01_14095 0.35 +1.8
7,211 - CSW01_14095 0.35 -0.8
7,221 - CSW01_14095 0.36 +0.9
7,414 + CSW01_14095 0.48 +0.6
7,477 - CSW01_14095 0.51 -1.5
7,642 + CSW01_14095 0.61 -2.7
7,675 - CSW01_14095 0.63 +0.8
7,684 + CSW01_14095 0.64 -3.3
7,686 + CSW01_14095 0.64 -2.7
7,689 - CSW01_14095 0.64 -1.5
7,696 + CSW01_14095 0.65 -1.8
7,790 + CSW01_14095 0.70 -0.1
7,790 + CSW01_14095 0.70 +0.6
7,798 - CSW01_14095 0.71 +1.1
7,973 - CSW01_14095 0.81 +0.1
7,984 - CSW01_14095 0.82 -2.8
8,082 - CSW01_14095 0.88 -3.5
8,171 + +0.3
8,171 + -3.2
8,217 + +0.7
8,222 + -2.5
8,309 + CSW01_14100 0.11 -2.7
8,331 - CSW01_14100 0.22 -0.9
8,347 - CSW01_14100 0.30 -0.2
8,455 + CSW01_14100 0.86 +0.8
8,509 + +0.6
8,521 + +1.4
8,576 - +1.6
8,792 - CSW01_14105 0.64 +0.3
9,001 - -0.4
9,025 - +1.0
9,106 - +1.2
9,148 - -0.0
9,152 - +0.8
9,153 - +0.4

Or see this region's nucleotide sequence