Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13815

Experiment: ICP3_phage_4.1_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_4.1_MOI_rep2
2,942,260	-		CSW01_13810	0.51	-1.6
2,942,278	+		CSW01_13810	0.52	-1.4
2,942,288	+		CSW01_13810	0.52	-0.8
2,942,305	+		CSW01_13810	0.53	-2.4
2,942,338	+		CSW01_13810	0.55	+0.1
2,942,362	-		CSW01_13810	0.57	+0.4
2,942,389	+		CSW01_13810	0.58	-4.0
2,942,389	-		CSW01_13810	0.58	-2.3
2,942,390	-		CSW01_13810	0.59	-3.3
2,942,617	+		CSW01_13810	0.72	-3.4
2,942,643	+		CSW01_13810	0.74	-3.3
2,942,643	+		CSW01_13810	0.74	-1.8
2,942,651	-		CSW01_13810	0.75	-0.9
2,942,651	-		CSW01_13810	0.75	-3.7
2,942,681	-		CSW01_13810	0.76	-2.8
2,942,687	+		CSW01_13810	0.77	-2.1
2,942,701	+		CSW01_13810	0.78	-1.0
2,942,720	+		CSW01_13810	0.79	-0.3
2,942,753	+		CSW01_13810	0.81	+1.4
2,942,753	+		CSW01_13810	0.81	-2.5
2,942,753	+		CSW01_13810	0.81	-2.5
2,942,761	-		CSW01_13810	0.81	-2.3
2,942,761	-		CSW01_13810	0.81	-2.1
2,942,761	-		CSW01_13810	0.81	-3.3
2,942,761	-		CSW01_13810	0.81	+2.2
2,942,761	-		CSW01_13810	0.81	-4.8
2,942,763	+		CSW01_13810	0.81	-2.2
2,942,791	-		CSW01_13810	0.83	-2.7
2,942,887	+		CSW01_13810	0.89	-2.1
2,942,895	-		CSW01_13810	0.90	-1.8
2,942,925	-				-3.8
2,942,991	+				-3.4
2,943,091	-				+1.0
2,943,135	+				-1.3
2,943,194	+				-0.7
2,943,274	+				-3.6
2,943,357	-				-1.6
2,943,366	+				-0.1
2,943,374	-				-0.2
2,943,380	+				-0.0
2,943,420	-				+0.6
2,943,421	+				+0.5
2,943,429	-				-2.5
2,943,561	-		CSW01_13815	0.16	+1.1
2,943,603	+		CSW01_13815	0.19	+0.4
2,943,631	-		CSW01_13815	0.20	-2.3
2,943,649	+		CSW01_13815	0.21	-2.5
2,943,649	+		CSW01_13815	0.21	+0.4
2,943,657	-		CSW01_13815	0.21	+0.9
2,943,700	+		CSW01_13815	0.24	+2.2
2,943,708	-		CSW01_13815	0.24	-0.8
2,943,708	-		CSW01_13815	0.24	+1.1
2,943,719	-		CSW01_13815	0.25	-2.3
2,943,776	-		CSW01_13815	0.28	+0.6
2,943,788	-		CSW01_13815	0.28	+1.6
2,943,804	+		CSW01_13815	0.29	-1.6
2,943,804	+		CSW01_13815	0.29	-0.4
2,943,804	+		CSW01_13815	0.29	-1.4
2,943,804	+		CSW01_13815	0.29	-3.7
2,943,804	+		CSW01_13815	0.29	-3.1
2,943,804	+		CSW01_13815	0.29	-1.2
2,943,804	+		CSW01_13815	0.29	-0.3
2,943,804	+		CSW01_13815	0.29	-3.7
2,943,804	+		CSW01_13815	0.29	+0.6
2,943,804	+		CSW01_13815	0.29	+0.4
2,943,804	+		CSW01_13815	0.29	-0.2
2,943,804	+		CSW01_13815	0.29	+1.7
2,943,804	+		CSW01_13815	0.29	+1.2
2,943,804	+		CSW01_13815	0.29	+0.4
2,943,804	+		CSW01_13815	0.29	+1.3
2,943,809	+		CSW01_13815	0.30	-2.2
2,943,812	-		CSW01_13815	0.30	-0.4
2,943,812	-		CSW01_13815	0.30	+1.5
2,943,812	-		CSW01_13815	0.30	-0.8
2,943,812	-		CSW01_13815	0.30	-0.8
2,943,812	-		CSW01_13815	0.30	+0.6
2,943,812	-		CSW01_13815	0.30	-0.1
2,943,812	-		CSW01_13815	0.30	-0.0
2,943,812	-		CSW01_13815	0.30	+1.4
2,943,812	-		CSW01_13815	0.30	-0.2
2,943,812	-		CSW01_13815	0.30	-2.4
2,943,812	-		CSW01_13815	0.30	-3.9
2,943,817	-		CSW01_13815	0.30	+0.0
2,943,819	+		CSW01_13815	0.30	+0.8
2,943,827	-		CSW01_13815	0.30	+1.7
2,943,827	-		CSW01_13815	0.30	+1.1
2,943,867	+		CSW01_13815	0.33	-2.3
2,943,879	+		CSW01_13815	0.33	+1.2
2,943,879	+		CSW01_13815	0.33	-0.5
2,943,879	+		CSW01_13815	0.33	-3.9
2,943,879	+		CSW01_13815	0.33	-4.8
2,943,904	-		CSW01_13815	0.35	+0.7
2,943,923	+		CSW01_13815	0.36	+1.0
2,943,964	+		CSW01_13815	0.38	+0.6
2,943,964	+		CSW01_13815	0.38	+0.7
2,943,976	+		CSW01_13815	0.38	+1.5
2,943,976	+		CSW01_13815	0.38	-0.1
2,943,976	+		CSW01_13815	0.38	+0.9
2,943,984	-		CSW01_13815	0.39	-0.9
2,943,984	-		CSW01_13815	0.39	+1.5
2,943,984	-		CSW01_13815	0.39	+0.5
2,943,986	+		CSW01_13815	0.39	+0.4
2,943,994	+		CSW01_13815	0.39	-1.0
2,943,994	+		CSW01_13815	0.39	-1.8
2,943,994	+		CSW01_13815	0.39	-1.2
2,943,994	+		CSW01_13815	0.39	-3.7
2,943,994	+		CSW01_13815	0.39	+0.3
2,943,994	+		CSW01_13815	0.39	+1.6
2,944,002	-		CSW01_13815	0.40	+0.7
2,944,002	-		CSW01_13815	0.40	+0.0
2,944,002	-		CSW01_13815	0.40	-1.1
2,944,002	-		CSW01_13815	0.40	+0.3
2,944,002	-		CSW01_13815	0.40	+1.4
2,944,002	-		CSW01_13815	0.40	-1.3
2,944,007	-		CSW01_13815	0.40	+1.0
2,944,033	-		CSW01_13815	0.41	-1.8
2,944,040	+		CSW01_13815	0.42	+0.0
2,944,067	-		CSW01_13815	0.43	-0.3
2,944,092	-		CSW01_13815	0.45	+0.0
2,944,104	+		CSW01_13815	0.45	-1.0
2,944,165	+		CSW01_13815	0.48	-3.7
2,944,165	+		CSW01_13815	0.48	+2.1
2,944,165	+		CSW01_13815	0.48	-1.9
2,944,170	+		CSW01_13815	0.49	-2.0
2,944,173	-		CSW01_13815	0.49	+0.7
2,944,173	-		CSW01_13815	0.49	-1.2
2,944,175	+		CSW01_13815	0.49	-0.7
2,944,177	+		CSW01_13815	0.49	+1.5
2,944,177	+		CSW01_13815	0.49	-4.3
2,944,177	+		CSW01_13815	0.49	+2.1
2,944,185	-		CSW01_13815	0.49	-0.5
2,944,192	+		CSW01_13815	0.50	-2.7
2,944,192	+		CSW01_13815	0.50	+1.2
2,944,192	+		CSW01_13815	0.50	+1.4
2,944,192	+		CSW01_13815	0.50	+0.7
2,944,228	+		CSW01_13815	0.52	-0.1
2,944,233	+		CSW01_13815	0.52	+2.0
2,944,236	-		CSW01_13815	0.52	+1.3
2,944,238	+		CSW01_13815	0.52	-3.3
2,944,238	+		CSW01_13815	0.52	-2.5
2,944,238	+		CSW01_13815	0.52	+0.7
2,944,238	+		CSW01_13815	0.52	-1.9
2,944,238	+		CSW01_13815	0.52	+0.0
2,944,238	+		CSW01_13815	0.52	-2.8
2,944,246	-		CSW01_13815	0.53	-0.1
2,944,246	-		CSW01_13815	0.53	-0.9
2,944,246	-		CSW01_13815	0.53	+0.6
2,944,246	-		CSW01_13815	0.53	+0.4
2,944,325	+		CSW01_13815	0.57	-0.4
2,944,326	+		CSW01_13815	0.57	+0.6
2,944,351	-		CSW01_13815	0.58	-0.7
2,944,435	+		CSW01_13815	0.63	+0.2
2,944,443	-		CSW01_13815	0.63	-0.6
2,944,471	+		CSW01_13815	0.65	-3.8
2,944,471	+		CSW01_13815	0.65	+0.9
2,944,479	-		CSW01_13815	0.65	+2.1
2,944,503	+		CSW01_13815	0.66	+0.5
2,944,503	+		CSW01_13815	0.66	+1.9
2,944,503	+		CSW01_13815	0.66	-1.6
2,944,503	+		CSW01_13815	0.66	-1.7
2,944,511	-		CSW01_13815	0.67	+0.6
2,944,511	-		CSW01_13815	0.67	-2.8
2,944,511	-		CSW01_13815	0.67	-1.1
2,944,511	-		CSW01_13815	0.67	-1.0
2,944,537	+		CSW01_13815	0.68	+1.8
2,944,545	-		CSW01_13815	0.69	-1.2
2,944,550	-		CSW01_13815	0.69	-0.5
2,944,555	+		CSW01_13815	0.69	+1.2
2,944,563	-		CSW01_13815	0.69	+0.0
2,944,588	+		CSW01_13815	0.71	-2.1
2,944,596	-		CSW01_13815	0.71	+0.8
2,944,609	+		CSW01_13815	0.72	-2.9
2,944,697	+		CSW01_13815	0.77	+0.9
2,944,857	+		CSW01_13815	0.85	-2.7
2,944,857	+		CSW01_13815	0.85	+0.3
2,944,857	+		CSW01_13815	0.85	-0.1
2,944,865	-		CSW01_13815	0.85	-2.5
2,944,865	-		CSW01_13815	0.85	+1.4
2,944,865	-		CSW01_13815	0.85	+0.4
2,944,884	-		CSW01_13815	0.86	+1.7
2,944,940	-		CSW01_13815	0.89	+1.2
2,944,962	-				+2.7
2,944,962	-				+0.3
2,944,962	-				-1.4
2,944,999	-				-3.2
2,945,012	+				-0.5
2,945,012	+				+0.9
2,945,020	-				-3.8
2,945,022	+				-1.5
2,945,030	-				-2.1
2,945,054	+				-3.1
2,945,076	+				+0.5
2,945,076	+				+1.8
2,945,077	-				-0.5
2,945,084	-				-0.4
2,945,111	-				+0.0
2,945,126	-				-0.3
2,945,141	-				+0.5
2,945,224	+				-4.7
2,945,379	-		CSW01_13820	0.21	+0.0
2,945,405	-		CSW01_13820	0.24	+1.4
2,945,418	-		CSW01_13820	0.26	-1.6
2,945,444	-		CSW01_13820	0.28	-3.1
2,945,456	+		CSW01_13820	0.30	+1.7
2,945,471	-		CSW01_13820	0.31	+0.7
2,945,473	-		CSW01_13820	0.31	-2.6
2,945,488	-		CSW01_13820	0.33	-2.2
2,945,493	-		CSW01_13820	0.34	+0.8
2,945,505	+		CSW01_13820	0.35	+1.3
2,945,526	+		CSW01_13820	0.37	+1.5
2,945,534	-		CSW01_13820	0.38	+0.7
2,945,543	+		CSW01_13820	0.39	-2.2
2,945,543	+		CSW01_13820	0.39	-0.0
2,945,551	-		CSW01_13820	0.40	+1.6
2,945,570	-		CSW01_13820	0.42	-3.0
2,945,597	+		CSW01_13820	0.45	+0.4
2,945,605	-		CSW01_13820	0.46	+2.3
2,945,632	+		CSW01_13820	0.48	+0.1
2,945,639	-		CSW01_13820	0.49	-0.7
2,945,646	+		CSW01_13820	0.50	+1.0
2,945,654	-		CSW01_13820	0.51	+0.8
2,945,654	-		CSW01_13820	0.51	-0.2
2,945,815	+		CSW01_13820	0.68	-2.1
2,945,823	-		CSW01_13820	0.69	+0.0
2,945,832	-		CSW01_13820	0.70	-2.7
2,945,849	+		CSW01_13820	0.72	+1.5
2,945,856	-		CSW01_13820	0.72	+0.6
2,945,857	-		CSW01_13820	0.73	+1.4
2,945,914	+		CSW01_13820	0.79	-3.1
2,945,954	+		CSW01_13820	0.83	-0.8
2,945,962	-		CSW01_13820	0.84	-3.4
2,946,001	+		CSW01_13820	0.88	+0.6
2,946,009	-		CSW01_13820	0.89	-0.9
2,946,030	-				+1.0
2,946,124	-				+0.3
2,946,131	+				-4.7