Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13615

Experiment: ICP3_phage_4.1_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_4.1_MOI_rep2
2,894,222	-		CSW01_13605	0.23	-1.1
2,894,224	-		CSW01_13605	0.24	-0.3
2,894,266	+		CSW01_13605	0.33	+0.5
2,894,274	-		CSW01_13605	0.34	+1.8
2,894,286	+		CSW01_13605	0.37	-1.1
2,894,366	+		CSW01_13605	0.54	-5.7
2,894,402	+		CSW01_13605	0.61	-0.3
2,894,449	-		CSW01_13605	0.71	+2.4
2,894,510	+		CSW01_13605	0.84	+0.4
2,894,510	+		CSW01_13605	0.84	-0.9
2,894,510	+		CSW01_13605	0.84	-4.3
2,894,510	+		CSW01_13605	0.84	-0.2
2,894,510	+		CSW01_13605	0.84	-0.3
2,894,510	+		CSW01_13605	0.84	+1.6
2,894,510	+		CSW01_13605	0.84	+0.6
2,894,510	+		CSW01_13605	0.84	+0.7
2,894,510	+		CSW01_13605	0.84	+0.8
2,894,510	+		CSW01_13605	0.84	+1.4
2,894,510	+		CSW01_13605	0.84	-0.0
2,894,510	+		CSW01_13605	0.84	+0.3
2,894,510	+		CSW01_13605	0.84	+1.2
2,894,510	+		CSW01_13605	0.84	-2.4
2,894,510	+		CSW01_13605	0.84	+1.1
2,894,510	+		CSW01_13605	0.84	+0.4
2,894,510	+		CSW01_13605	0.84	+2.0
2,894,510	+		CSW01_13605	0.84	-2.9
2,894,510	+		CSW01_13605	0.84	-0.4
2,894,510	+		CSW01_13605	0.84	-1.4
2,894,510	+		CSW01_13605	0.84	+1.1
2,894,518	-		CSW01_13605	0.86	+1.2
2,894,518	-		CSW01_13605	0.86	-0.6
2,894,518	-		CSW01_13605	0.86	+1.2
2,894,518	-		CSW01_13605	0.86	+0.9
2,894,518	-		CSW01_13605	0.86	-0.7
2,894,518	-		CSW01_13605	0.86	-3.5
2,894,518	-		CSW01_13605	0.86	-1.8
2,894,518	-		CSW01_13605	0.86	+1.8
2,894,518	-		CSW01_13605	0.86	+0.9
2,894,518	-		CSW01_13605	0.86	+1.2
2,894,518	-		CSW01_13605	0.86	-0.1
2,894,518	-		CSW01_13605	0.86	-0.6
2,894,518	-		CSW01_13605	0.86	+2.2
2,894,518	-		CSW01_13605	0.86	+0.1
2,894,518	-		CSW01_13605	0.86	-0.1
2,894,518	-		CSW01_13605	0.86	+0.8
2,894,518	-		CSW01_13605	0.86	-1.0
2,894,518	-		CSW01_13605	0.86	-4.9
2,894,518	-		CSW01_13605	0.86	+1.0
2,894,518	-		CSW01_13605	0.86	-1.0
2,894,518	-		CSW01_13605	0.86	-0.2
2,894,581	+				+0.2
2,894,581	+				+3.5
2,894,581	+				-1.4
2,894,581	+				+1.9
2,894,581	+				+0.3
2,894,581	+				-1.8
2,894,581	+				+0.3
2,894,581	+				-1.4
2,894,581	+				-0.2
2,894,581	+				-2.3
2,894,581	+				-2.4
2,894,581	+				-0.7
2,894,589	-				+0.8
2,894,589	-				+0.2
2,894,617	-				-1.1
2,894,632	+				-0.2
2,894,640	-				-1.7
2,894,640	-				+0.2
2,894,667	+				+1.1
2,894,708	+		CSW01_13610	0.18	+1.9
2,894,708	+		CSW01_13610	0.18	-3.4
2,894,708	+		CSW01_13610	0.18	-1.2
2,894,708	+		CSW01_13610	0.18	-2.8
2,894,708	+		CSW01_13610	0.18	-1.2
2,894,716	-		CSW01_13610	0.20	-4.3
2,894,716	-		CSW01_13610	0.20	+0.4
2,894,718	+		CSW01_13610	0.20	+0.0
2,894,718	+		CSW01_13610	0.20	-0.2
2,894,726	-		CSW01_13610	0.22	-0.4
2,894,745	-		CSW01_13610	0.26	+0.6
2,894,747	+		CSW01_13610	0.26	+0.7
2,894,765	-		CSW01_13610	0.30	+0.8
2,894,765	-		CSW01_13610	0.30	+2.0
2,894,838	+		CSW01_13610	0.45	-0.2
2,894,846	-		CSW01_13610	0.47	-1.6
2,894,874	+		CSW01_13610	0.52	+0.2
2,894,874	+		CSW01_13610	0.52	+0.2
2,894,874	+		CSW01_13610	0.52	-2.5
2,894,874	+		CSW01_13610	0.52	-1.0
2,894,883	-		CSW01_13610	0.54	+1.3
2,894,911	+		CSW01_13610	0.60	+0.9
2,894,919	-		CSW01_13610	0.62	+0.9
2,894,919	-		CSW01_13610	0.62	+0.8
2,894,919	-		CSW01_13610	0.62	-3.0
2,894,928	+		CSW01_13610	0.63	+0.6
2,894,931	-		CSW01_13610	0.64	+0.4
2,894,992	+		CSW01_13610	0.77	-3.7
2,894,997	+		CSW01_13610	0.78	-0.8
2,894,997	+		CSW01_13610	0.78	-1.4
2,894,997	+		CSW01_13610	0.78	-1.1
2,895,003	+		CSW01_13610	0.79	+2.2
2,895,005	-		CSW01_13610	0.79	-4.0
2,895,015	+		CSW01_13610	0.81	-3.4
2,895,015	+		CSW01_13610	0.81	-0.8
2,895,015	+		CSW01_13610	0.81	+2.7
2,895,015	+		CSW01_13610	0.81	+0.1
2,895,103	+				-2.9
2,895,128	+				+1.2
2,895,132	+				+0.9
2,895,135	-				-0.6
2,895,253	+				-1.4
2,895,261	-				+0.3
2,895,298	+		CSW01_13615	0.11	-3.3
2,895,305	+		CSW01_13615	0.12	+1.0
2,895,310	+		CSW01_13615	0.12	+0.6
2,895,310	+		CSW01_13615	0.12	+0.4
2,895,310	+		CSW01_13615	0.12	+0.9
2,895,310	+		CSW01_13615	0.12	-3.6
2,895,310	+		CSW01_13615	0.12	-2.7
2,895,310	+		CSW01_13615	0.12	-1.6
2,895,310	+		CSW01_13615	0.12	-3.1
2,895,318	-		CSW01_13615	0.13	-0.9
2,895,318	-		CSW01_13615	0.13	-0.1
2,895,318	-		CSW01_13615	0.13	-0.1
2,895,318	-		CSW01_13615	0.13	+0.3
2,895,318	-		CSW01_13615	0.13	-0.7
2,895,318	-		CSW01_13615	0.13	+2.3
2,895,343	-		CSW01_13615	0.16	-1.6
2,895,343	-		CSW01_13615	0.16	+2.0
2,895,357	+		CSW01_13615	0.17	+1.2
2,895,364	+		CSW01_13615	0.18	-0.1
2,895,369	+		CSW01_13615	0.18	+3.1
2,895,370	-		CSW01_13615	0.18	-4.3
2,895,370	-		CSW01_13615	0.18	-2.3
2,895,378	+		CSW01_13615	0.19	+1.8
2,895,421	+		CSW01_13615	0.24	+1.7
2,895,429	-		CSW01_13615	0.25	-1.2
2,895,450	+		CSW01_13615	0.27	-3.3
2,895,462	+		CSW01_13615	0.28	+1.5
2,895,462	+		CSW01_13615	0.28	+1.1
2,895,467	+		CSW01_13615	0.29	-2.2
2,895,470	-		CSW01_13615	0.29	+0.7
2,895,470	-		CSW01_13615	0.29	+1.4
2,895,482	+		CSW01_13615	0.30	-1.1
2,895,485	-		CSW01_13615	0.31	+0.0
2,895,514	+		CSW01_13615	0.34	+0.0
2,895,522	-		CSW01_13615	0.35	-3.8
2,895,707	+		CSW01_13615	0.54	+0.5
2,895,715	-		CSW01_13615	0.55	-0.8
2,895,769	-		CSW01_13615	0.61	-1.6
2,895,780	+		CSW01_13615	0.62	+1.5
2,895,804	-		CSW01_13615	0.65	+0.3
2,895,873	-		CSW01_13615	0.72	-3.5
2,895,873	-		CSW01_13615	0.72	+1.3
2,895,885	-		CSW01_13615	0.73	-0.7
2,895,910	+		CSW01_13615	0.76	+0.4
2,896,000	+		CSW01_13615	0.86	-2.5
2,896,005	+		CSW01_13615	0.86	-2.8
2,896,009	+		CSW01_13615	0.86	+0.2
2,896,013	-		CSW01_13615	0.87	+1.1
2,896,013	-		CSW01_13615	0.87	+0.1
2,896,017	-		CSW01_13615	0.87	-0.9
2,896,110	-				+1.6
2,896,140	-				-3.1
2,896,140	-				-3.5
2,896,175	+				-0.3
2,896,215	+				-0.2
2,896,257	+				-0.3
2,896,257	+				+0.9
2,896,259	+				-0.1
2,896,265	-				-0.0
2,896,277	-				-0.2
2,896,408	-				+1.8
2,896,426	+				-3.1
2,896,437	+				-3.0
2,896,446	+				-1.2
2,896,482	+				-2.1
2,896,482	+				+0.5
2,896,482	+				-3.1
2,896,482	+				-0.2
2,896,490	+				+3.0
2,896,524	+				-2.8
2,896,681	-		CSW01_13620	0.21	+0.2
2,896,720	+		CSW01_13620	0.23	-5.1
2,896,728	-		CSW01_13620	0.24	+0.8
2,896,757	+		CSW01_13620	0.26	+0.1
2,896,765	-		CSW01_13620	0.27	-2.4
2,896,805	-		CSW01_13620	0.29	-2.3
2,896,808	+		CSW01_13620	0.29	+1.7
2,896,846	+		CSW01_13620	0.32	-2.9
2,896,875	+		CSW01_13620	0.34	-1.2
2,896,980	+		CSW01_13620	0.41	+0.6
2,897,051	+		CSW01_13620	0.46	+0.4
2,897,054	-		CSW01_13620	0.46	-1.0
2,897,061	+		CSW01_13620	0.47	+0.7
2,897,069	-		CSW01_13620	0.47	-4.0
2,897,069	-		CSW01_13620	0.47	+1.2
2,897,069	-		CSW01_13620	0.47	+0.0
2,897,069	-		CSW01_13620	0.47	+0.8
2,897,069	-		CSW01_13620	0.47	+1.2
2,897,071	+		CSW01_13620	0.48	-1.6
2,897,071	+		CSW01_13620	0.48	+1.5
2,897,071	-		CSW01_13620	0.48	-4.1
2,897,116	+		CSW01_13620	0.51	-2.8
2,897,116	+		CSW01_13620	0.51	+0.9
2,897,116	+		CSW01_13620	0.51	+0.3
2,897,116	+		CSW01_13620	0.51	-3.1
2,897,121	+		CSW01_13620	0.51	+0.5
2,897,121	+		CSW01_13620	0.51	+0.5
2,897,124	-		CSW01_13620	0.51	+1.9
2,897,124	-		CSW01_13620	0.51	-2.8
2,897,124	-		CSW01_13620	0.51	+1.3
2,897,124	-		CSW01_13620	0.51	+1.6
2,897,129	-		CSW01_13620	0.52	-2.4
2,897,129	-		CSW01_13620	0.52	-0.4
2,897,129	-		CSW01_13620	0.52	+2.2