Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09300

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09290 and CSW01_09295 are separated by 37 nucleotidesCSW01_09295 and CSW01_09300 overlap by 16 nucleotidesCSW01_09300 and CSW01_09305 are separated by 0 nucleotidesCSW01_09305 and CSW01_09310 are separated by 23 nucleotides CSW01_09290: CSW01_09290 - ATP-dependent DNA helicase DinG, at 1,993,034 to 1,995,109 _09290 CSW01_09295: CSW01_09295 - hypothetical protein, at 1,995,147 to 1,995,926 _09295 CSW01_09300: CSW01_09300 - prepilin peptidase, at 1,995,911 to 1,996,474 _09300 CSW01_09305: CSW01_09305 - primosomal protein, at 1,996,475 to 1,996,687 _09305 CSW01_09310: CSW01_09310 - methyl-accepting chemotaxis protein, at 1,996,711 to 1,998,831 _09310 Position (kb) 1995 1996 1997Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1994.990 kb on - strandat 1995.098 kb on + strandat 1995.165 kb on - strandat 1995.165 kb on - strandat 1995.399 kb on + strand, within CSW01_09295at 1995.453 kb on - strand, within CSW01_09295at 1995.505 kb on - strand, within CSW01_09295at 1995.528 kb on + strand, within CSW01_09295at 1995.541 kb on + strand, within CSW01_09295at 1995.541 kb on + strand, within CSW01_09295at 1995.556 kb on - strand, within CSW01_09295at 1995.561 kb on - strand, within CSW01_09295at 1995.617 kb on - strand, within CSW01_09295at 1995.635 kb on + strand, within CSW01_09295at 1995.649 kb on + strand, within CSW01_09295at 1995.685 kb on + strand, within CSW01_09295at 1995.739 kb on + strand, within CSW01_09295at 1995.747 kb on - strand, within CSW01_09295at 1995.752 kb on + strand, within CSW01_09295at 1995.820 kb on - strand, within CSW01_09295at 1995.830 kb on - strand, within CSW01_09295at 1995.854 kb on - strandat 1995.854 kb on - strandat 1996.015 kb on - strand, within CSW01_09300at 1996.031 kb on + strand, within CSW01_09300at 1996.054 kb on + strand, within CSW01_09300at 1996.062 kb on - strand, within CSW01_09300at 1996.097 kb on + strand, within CSW01_09300at 1996.105 kb on - strand, within CSW01_09300at 1996.147 kb on + strand, within CSW01_09300at 1996.155 kb on - strand, within CSW01_09300at 1996.182 kb on - strand, within CSW01_09300at 1996.184 kb on - strand, within CSW01_09300at 1996.313 kb on + strand, within CSW01_09300at 1996.382 kb on + strand, within CSW01_09300at 1996.390 kb on - strand, within CSW01_09300at 1996.514 kb on - strand, within CSW01_09305at 1996.672 kb on + strandat 1996.738 kb on + strandat 1996.932 kb on + strand, within CSW01_09310at 1996.937 kb on + strand, within CSW01_09310at 1996.945 kb on - strand, within CSW01_09310at 1996.955 kb on - strand, within CSW01_09310at 1996.973 kb on + strand, within CSW01_09310at 1996.973 kb on + strand, within CSW01_09310at 1996.973 kb on + strand, within CSW01_09310at 1996.973 kb on + strand, within CSW01_09310at 1996.973 kb on + strand, within CSW01_09310at 1996.981 kb on - strand, within CSW01_09310at 1996.981 kb on - strand, within CSW01_09310at 1996.981 kb on - strand, within CSW01_09310at 1996.981 kb on - strand, within CSW01_09310at 1996.981 kb on - strand, within CSW01_09310at 1996.999 kb on + strand, within CSW01_09310at 1997.234 kb on + strand, within CSW01_09310at 1997.234 kb on + strand, within CSW01_09310at 1997.309 kb on + strand, within CSW01_09310at 1997.315 kb on - strand, within CSW01_09310at 1997.325 kb on + strand, within CSW01_09310at 1997.408 kb on - strand, within CSW01_09310at 1997.450 kb on + strand, within CSW01_09310

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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1,994,990 - +0.4
1,995,098 + +0.7
1,995,165 - -3.0
1,995,165 - -3.0
1,995,399 + CSW01_09295 0.32 +1.5
1,995,453 - CSW01_09295 0.39 +0.2
1,995,505 - CSW01_09295 0.46 +0.5
1,995,528 + CSW01_09295 0.49 -1.2
1,995,541 + CSW01_09295 0.51 -2.5
1,995,541 + CSW01_09295 0.51 -3.4
1,995,556 - CSW01_09295 0.52 +1.0
1,995,561 - CSW01_09295 0.53 -2.3
1,995,617 - CSW01_09295 0.60 -4.2
1,995,635 + CSW01_09295 0.63 -0.5
1,995,649 + CSW01_09295 0.64 +1.8
1,995,685 + CSW01_09295 0.69 +0.1
1,995,739 + CSW01_09295 0.76 +0.8
1,995,747 - CSW01_09295 0.77 +0.1
1,995,752 + CSW01_09295 0.78 +0.4
1,995,820 - CSW01_09295 0.86 -2.0
1,995,830 - CSW01_09295 0.88 +0.5
1,995,854 - +0.7
1,995,854 - -3.3
1,996,015 - CSW01_09300 0.18 -4.7
1,996,031 + CSW01_09300 0.21 -0.9
1,996,054 + CSW01_09300 0.25 +0.3
1,996,062 - CSW01_09300 0.27 +0.2
1,996,097 + CSW01_09300 0.33 -1.5
1,996,105 - CSW01_09300 0.34 -0.6
1,996,147 + CSW01_09300 0.42 -3.6
1,996,155 - CSW01_09300 0.43 -1.8
1,996,182 - CSW01_09300 0.48 +1.2
1,996,184 - CSW01_09300 0.48 -0.8
1,996,313 + CSW01_09300 0.71 -0.1
1,996,382 + CSW01_09300 0.84 +0.7
1,996,390 - CSW01_09300 0.85 -0.4
1,996,514 - CSW01_09305 0.18 -1.1
1,996,672 + -0.7
1,996,738 + +0.0
1,996,932 + CSW01_09310 0.10 +1.2
1,996,937 + CSW01_09310 0.11 -1.3
1,996,945 - CSW01_09310 0.11 +1.2
1,996,955 - CSW01_09310 0.12 +0.3
1,996,973 + CSW01_09310 0.12 +0.9
1,996,973 + CSW01_09310 0.12 +0.9
1,996,973 + CSW01_09310 0.12 -3.5
1,996,973 + CSW01_09310 0.12 -0.5
1,996,973 + CSW01_09310 0.12 -0.3
1,996,981 - CSW01_09310 0.13 -0.8
1,996,981 - CSW01_09310 0.13 -2.3
1,996,981 - CSW01_09310 0.13 +0.8
1,996,981 - CSW01_09310 0.13 +0.4
1,996,981 - CSW01_09310 0.13 -2.2
1,996,999 + CSW01_09310 0.14 -1.2
1,997,234 + CSW01_09310 0.25 -3.3
1,997,234 + CSW01_09310 0.25 -0.6
1,997,309 + CSW01_09310 0.28 -2.7
1,997,315 - CSW01_09310 0.28 -1.8
1,997,325 + CSW01_09310 0.29 -0.3
1,997,408 - CSW01_09310 0.33 +1.6
1,997,450 + CSW01_09310 0.35 +0.2

Or see this region's nucleotide sequence