Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07755

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07745 and CSW01_07750 are separated by 99 nucleotidesCSW01_07750 and CSW01_07755 are separated by 21 nucleotidesCSW01_07755 and CSW01_07760 overlap by 4 nucleotidesCSW01_07760 and CSW01_07765 overlap by 1 nucleotides CSW01_07745: CSW01_07745 - DNA ligase, at 1,653,660 to 1,654,508 _07745 CSW01_07750: CSW01_07750 - hypothetical protein, at 1,654,608 to 1,654,793 _07750 CSW01_07755: CSW01_07755 - hypothetical protein, at 1,654,815 to 1,655,993 _07755 CSW01_07760: CSW01_07760 - energy transducer TonB, at 1,655,990 to 1,656,610 _07760 CSW01_07765: CSW01_07765 - biopolymer transporter exbD2, at 1,656,610 to 1,657,014 _07765 Position (kb) 1654 1655 1656Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1653.848 kb on - strand, within CSW01_07745at 1653.940 kb on + strand, within CSW01_07745at 1653.968 kb on + strand, within CSW01_07745at 1653.968 kb on + strand, within CSW01_07745at 1653.976 kb on - strand, within CSW01_07745at 1653.976 kb on - strand, within CSW01_07745at 1654.052 kb on - strand, within CSW01_07745at 1654.148 kb on + strand, within CSW01_07745at 1654.154 kb on + strand, within CSW01_07745at 1654.156 kb on - strand, within CSW01_07745at 1654.191 kb on + strand, within CSW01_07745at 1654.294 kb on + strand, within CSW01_07745at 1654.302 kb on - strand, within CSW01_07745at 1654.478 kb on + strandat 1654.596 kb on - strandat 1654.627 kb on + strand, within CSW01_07750at 1654.802 kb on + strandat 1655.148 kb on - strand, within CSW01_07755at 1655.189 kb on + strand, within CSW01_07755at 1655.345 kb on + strand, within CSW01_07755at 1655.353 kb on - strand, within CSW01_07755at 1655.413 kb on - strand, within CSW01_07755at 1655.448 kb on - strand, within CSW01_07755at 1655.448 kb on - strand, within CSW01_07755at 1655.504 kb on - strand, within CSW01_07755at 1655.607 kb on + strand, within CSW01_07755at 1655.623 kb on + strand, within CSW01_07755at 1655.919 kb on - strandat 1656.001 kb on + strandat 1656.034 kb on + strandat 1656.057 kb on + strand, within CSW01_07760at 1656.065 kb on - strand, within CSW01_07760at 1656.203 kb on + strand, within CSW01_07760at 1656.232 kb on + strand, within CSW01_07760at 1656.232 kb on + strand, within CSW01_07760at 1656.237 kb on + strand, within CSW01_07760at 1656.240 kb on - strand, within CSW01_07760at 1656.245 kb on - strand, within CSW01_07760at 1656.245 kb on - strand, within CSW01_07760at 1656.245 kb on - strand, within CSW01_07760at 1656.248 kb on - strand, within CSW01_07760at 1656.318 kb on + strand, within CSW01_07760at 1656.481 kb on + strand, within CSW01_07760at 1656.489 kb on - strand, within CSW01_07760at 1656.557 kb on - strandat 1656.707 kb on + strand, within CSW01_07765at 1656.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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1,653,848 - CSW01_07745 0.22 +1.0
1,653,940 + CSW01_07745 0.33 -0.4
1,653,968 + CSW01_07745 0.36 -0.3
1,653,968 + CSW01_07745 0.36 -0.8
1,653,976 - CSW01_07745 0.37 +0.7
1,653,976 - CSW01_07745 0.37 -0.8
1,654,052 - CSW01_07745 0.46 +0.4
1,654,148 + CSW01_07745 0.57 -2.0
1,654,154 + CSW01_07745 0.58 +1.0
1,654,156 - CSW01_07745 0.58 +0.3
1,654,191 + CSW01_07745 0.63 +0.7
1,654,294 + CSW01_07745 0.75 +1.0
1,654,302 - CSW01_07745 0.76 +1.2
1,654,478 + +0.6
1,654,596 - -1.3
1,654,627 + CSW01_07750 0.10 -1.4
1,654,802 + -1.7
1,655,148 - CSW01_07755 0.28 -1.0
1,655,189 + CSW01_07755 0.32 +0.5
1,655,345 + CSW01_07755 0.45 -0.9
1,655,353 - CSW01_07755 0.46 -1.7
1,655,413 - CSW01_07755 0.51 -1.1
1,655,448 - CSW01_07755 0.54 -0.9
1,655,448 - CSW01_07755 0.54 -0.2
1,655,504 - CSW01_07755 0.58 -1.1
1,655,607 + CSW01_07755 0.67 -2.6
1,655,623 + CSW01_07755 0.69 +0.7
1,655,919 - -0.7
1,656,001 + +0.6
1,656,034 + +1.3
1,656,057 + CSW01_07760 0.11 -2.4
1,656,065 - CSW01_07760 0.12 -1.0
1,656,203 + CSW01_07760 0.34 +0.1
1,656,232 + CSW01_07760 0.39 -1.0
1,656,232 + CSW01_07760 0.39 -2.9
1,656,237 + CSW01_07760 0.40 -1.4
1,656,240 - CSW01_07760 0.40 -2.0
1,656,245 - CSW01_07760 0.41 +1.8
1,656,245 - CSW01_07760 0.41 -2.9
1,656,245 - CSW01_07760 0.41 +0.2
1,656,248 - CSW01_07760 0.42 -0.1
1,656,318 + CSW01_07760 0.53 -1.0
1,656,481 + CSW01_07760 0.79 -1.2
1,656,489 - CSW01_07760 0.80 +0.4
1,656,557 - -0.8
1,656,707 + CSW01_07765 0.24 -0.5
1,656,978 - +1.6

Or see this region's nucleotide sequence