Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04785 and CSW01_04790 are separated by 70 nucleotides CSW01_04790 and CSW01_04795 are separated by 3 nucleotides CSW01_04795 and CSW01_04800 are separated by 24 nucleotides
CSW01_04785: CSW01_04785 - undecaprenyl-phosphate glucose phosphotransferase, at 997,982 to 999,379
_04785
CSW01_04790: CSW01_04790 - TetR family transcriptional regulator, at 999,450 to 1,000,646
_04790
CSW01_04795: CSW01_04795 - polysaccharide biosynthesis/export family protein, at 1,000,650 to 1,001,177
_04795
CSW01_04800: CSW01_04800 - chain-length determining protein, at 1,001,202 to 1,003,415
_04800
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 998.549 kb on + strand, within CSW01_04785 at 998.552 kb on - strand, within CSW01_04785 at 998.557 kb on - strand, within CSW01_04785 at 998.562 kb on - strand, within CSW01_04785 at 998.570 kb on + strand, within CSW01_04785 at 998.570 kb on + strand, within CSW01_04785 at 998.570 kb on + strand, within CSW01_04785 at 998.578 kb on - strand, within CSW01_04785 at 998.578 kb on - strand, within CSW01_04785 at 998.578 kb on - strand, within CSW01_04785 at 998.578 kb on - strand, within CSW01_04785 at 998.578 kb on - strand, within CSW01_04785 at 998.578 kb on - strand, within CSW01_04785 at 998.589 kb on - strand, within CSW01_04785 at 998.693 kb on - strand, within CSW01_04785 at 998.730 kb on - strand, within CSW01_04785 at 998.737 kb on - strand, within CSW01_04785 at 998.787 kb on - strand, within CSW01_04785 at 998.791 kb on + strand, within CSW01_04785 at 998.801 kb on + strand, within CSW01_04785 at 998.822 kb on + strand, within CSW01_04785 at 998.830 kb on - strand, within CSW01_04785 at 998.830 kb on - strand, within CSW01_04785 at 998.848 kb on + strand, within CSW01_04785 at 998.858 kb on + strand, within CSW01_04785 at 998.861 kb on - strand, within CSW01_04785 at 998.861 kb on - strand, within CSW01_04785 at 998.866 kb on - strand, within CSW01_04785 at 998.880 kb on + strand, within CSW01_04785 at 998.880 kb on + strand, within CSW01_04785 at 998.888 kb on - strand, within CSW01_04785 at 998.890 kb on + strand, within CSW01_04785 at 998.978 kb on - strand, within CSW01_04785 at 998.996 kb on + strand, within CSW01_04785 at 999.057 kb on + strand, within CSW01_04785 at 999.065 kb on + strand, within CSW01_04785 at 999.174 kb on + strand, within CSW01_04785 at 999.223 kb on + strand, within CSW01_04785 at 999.223 kb on + strand, within CSW01_04785 at 999.223 kb on + strand, within CSW01_04785 at 999.231 kb on - strand, within CSW01_04785 at 999.292 kb on - strand at 999.382 kb on - strand at 999.382 kb on - strand at 999.382 kb on - strand at 999.469 kb on + strand at 999.500 kb on + strand at 999.508 kb on - strand at 999.508 kb on - strand at 999.508 kb on - strand at 999.508 kb on - strand at 999.516 kb on + strand at 999.518 kb on + strand at 999.524 kb on - strand at 999.745 kb on - strand, within CSW01_04790 at 999.775 kb on + strand, within CSW01_04790 at 999.775 kb on + strand, within CSW01_04790 at 999.775 kb on + strand, within CSW01_04790 at 999.783 kb on - strand, within CSW01_04790 at 999.783 kb on - strand, within CSW01_04790 at 999.783 kb on - strand, within CSW01_04790 at 999.836 kb on - strand, within CSW01_04790 at 999.840 kb on + strand, within CSW01_04790 at 999.840 kb on + strand, within CSW01_04790 at 999.856 kb on + strand, within CSW01_04790 at 999.861 kb on + strand, within CSW01_04790 at 999.869 kb on + strand, within CSW01_04790 at 1000.017 kb on - strand, within CSW01_04790 at 1000.033 kb on - strand, within CSW01_04790 at 1000.051 kb on - strand, within CSW01_04790 at 1000.117 kb on + strand, within CSW01_04790 at 1000.125 kb on - strand, within CSW01_04790 at 1000.208 kb on - strand, within CSW01_04790 at 1000.224 kb on - strand, within CSW01_04790 at 1000.300 kb on + strand, within CSW01_04790 at 1000.313 kb on + strand, within CSW01_04790 at 1000.313 kb on + strand, within CSW01_04790 at 1000.321 kb on - strand, within CSW01_04790 at 1000.321 kb on - strand, within CSW01_04790 at 1000.446 kb on + strand, within CSW01_04790 at 1000.474 kb on - strand, within CSW01_04790 at 1000.546 kb on + strand at 1000.554 kb on - strand at 1000.554 kb on - strand at 1000.601 kb on - strand at 1000.606 kb on + strand at 1000.624 kb on + strand at 1000.641 kb on + strand at 1000.648 kb on - strand at 1000.649 kb on - strand at 1000.689 kb on - strand at 1000.915 kb on + strand, within CSW01_04795 at 1000.915 kb on + strand, within CSW01_04795 at 1000.915 kb on + strand, within CSW01_04795 at 1000.915 kb on + strand, within CSW01_04795 at 1000.915 kb on + strand, within CSW01_04795 at 1000.915 kb on + strand, within CSW01_04795 at 1000.916 kb on + strand, within CSW01_04795 at 1000.923 kb on - strand, within CSW01_04795 at 1000.923 kb on - strand, within CSW01_04795 at 1000.923 kb on - strand, within CSW01_04795 at 1000.923 kb on - strand, within CSW01_04795 at 1000.923 kb on - strand, within CSW01_04795 at 1000.923 kb on - strand, within CSW01_04795 at 1000.923 kb on - strand, within CSW01_04795 at 1000.923 kb on - strand, within CSW01_04795 at 1000.979 kb on + strand, within CSW01_04795 at 1000.987 kb on - strand, within CSW01_04795 at 1001.041 kb on + strand, within CSW01_04795 at 1001.078 kb on + strand, within CSW01_04795 at 1001.103 kb on + strand, within CSW01_04795 at 1001.185 kb on + strand at 1001.185 kb on + strand at 1001.193 kb on - strand at 1001.247 kb on - strand at 1001.310 kb on + strand at 1001.310 kb on + strand at 1001.375 kb on - strand at 1001.387 kb on + strand at 1001.387 kb on + strand at 1001.441 kb on - strand, within CSW01_04800 at 1001.516 kb on - strand, within CSW01_04800 at 1001.564 kb on - strand, within CSW01_04800 at 1001.564 kb on - strand, within CSW01_04800
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 998,549 + CSW01_04785 0.41 -1.6 998,552 - CSW01_04785 0.41 +0.1 998,557 - CSW01_04785 0.41 -0.4 998,562 - CSW01_04785 0.41 -2.8 998,570 + CSW01_04785 0.42 +0.3 998,570 + CSW01_04785 0.42 +0.4 998,570 + CSW01_04785 0.42 +0.6 998,578 - CSW01_04785 0.43 +1.0 998,578 - CSW01_04785 0.43 +0.2 998,578 - CSW01_04785 0.43 -1.2 998,578 - CSW01_04785 0.43 -0.1 998,578 - CSW01_04785 0.43 -4.5 998,578 - CSW01_04785 0.43 -2.2 998,589 - CSW01_04785 0.43 -3.8 998,693 - CSW01_04785 0.51 +0.2 998,730 - CSW01_04785 0.54 +0.3 998,737 - CSW01_04785 0.54 +1.3 998,787 - CSW01_04785 0.58 -3.8 998,791 + CSW01_04785 0.58 +1.4 998,801 + CSW01_04785 0.59 -3.2 998,822 + CSW01_04785 0.60 +0.2 998,830 - CSW01_04785 0.61 +0.1 998,830 - CSW01_04785 0.61 -0.8 998,848 + CSW01_04785 0.62 +0.5 998,858 + CSW01_04785 0.63 -0.8 998,861 - CSW01_04785 0.63 +0.6 998,861 - CSW01_04785 0.63 +0.2 998,866 - CSW01_04785 0.63 +0.7 998,880 + CSW01_04785 0.64 -0.8 998,880 + CSW01_04785 0.64 +1.2 998,888 - CSW01_04785 0.65 -2.1 998,890 + CSW01_04785 0.65 +0.2 998,978 - CSW01_04785 0.71 +2.1 998,996 + CSW01_04785 0.73 +1.2 999,057 + CSW01_04785 0.77 +1.0 999,065 + CSW01_04785 0.77 -0.6 999,174 + CSW01_04785 0.85 -1.5 999,223 + CSW01_04785 0.89 +0.8 999,223 + CSW01_04785 0.89 +0.5 999,223 + CSW01_04785 0.89 +2.0 999,231 - CSW01_04785 0.89 +1.0 999,292 - -0.5 999,382 - +1.0 999,382 - -0.7 999,382 - +0.4 999,469 + -0.5 999,500 + -0.9 999,508 - +0.4 999,508 - +0.3 999,508 - -2.0 999,508 - -0.3 999,516 + -3.4 999,518 + +0.3 999,524 - -4.2 999,745 - CSW01_04790 0.25 +0.3 999,775 + CSW01_04790 0.27 -1.2 999,775 + CSW01_04790 0.27 -2.2 999,775 + CSW01_04790 0.27 -3.4 999,783 - CSW01_04790 0.28 +0.4 999,783 - CSW01_04790 0.28 -2.8 999,783 - CSW01_04790 0.28 +1.8 999,836 - CSW01_04790 0.32 +0.5 999,840 + CSW01_04790 0.33 +1.3 999,840 + CSW01_04790 0.33 +0.1 999,856 + CSW01_04790 0.34 +0.0 999,861 + CSW01_04790 0.34 +0.1 999,869 + CSW01_04790 0.35 +0.3 1,000,017 - CSW01_04790 0.47 +0.7 1,000,033 - CSW01_04790 0.49 -0.6 1,000,051 - CSW01_04790 0.50 +0.3 1,000,117 + CSW01_04790 0.56 +0.6 1,000,125 - CSW01_04790 0.56 +2.6 1,000,208 - CSW01_04790 0.63 -0.3 1,000,224 - CSW01_04790 0.65 -2.9 1,000,300 + CSW01_04790 0.71 +0.3 1,000,313 + CSW01_04790 0.72 +0.6 1,000,313 + CSW01_04790 0.72 -2.5 1,000,321 - CSW01_04790 0.73 -2.0 1,000,321 - CSW01_04790 0.73 -0.5 1,000,446 + CSW01_04790 0.83 +0.3 1,000,474 - CSW01_04790 0.86 -1.8 1,000,546 + -0.9 1,000,554 - -0.8 1,000,554 - +0.0 1,000,601 - -3.6 1,000,606 + -0.0 1,000,624 + -2.2 1,000,641 + +2.4 1,000,648 - +0.4 1,000,649 - -1.1 1,000,689 - +0.5 1,000,915 + CSW01_04795 0.50 -1.9 1,000,915 + CSW01_04795 0.50 -0.8 1,000,915 + CSW01_04795 0.50 +0.0 1,000,915 + CSW01_04795 0.50 +0.6 1,000,915 + CSW01_04795 0.50 -3.2 1,000,915 + CSW01_04795 0.50 +1.1 1,000,916 + CSW01_04795 0.50 -3.6 1,000,923 - CSW01_04795 0.52 +0.3 1,000,923 - CSW01_04795 0.52 -0.6 1,000,923 - CSW01_04795 0.52 +0.3 1,000,923 - CSW01_04795 0.52 +0.1 1,000,923 - CSW01_04795 0.52 -0.5 1,000,923 - CSW01_04795 0.52 -2.2 1,000,923 - CSW01_04795 0.52 +1.5 1,000,923 - CSW01_04795 0.52 -2.5 1,000,979 + CSW01_04795 0.62 +1.1 1,000,987 - CSW01_04795 0.64 +1.1 1,001,041 + CSW01_04795 0.74 -2.9 1,001,078 + CSW01_04795 0.81 +0.5 1,001,103 + CSW01_04795 0.86 -0.9 1,001,185 + -0.9 1,001,185 + -0.3 1,001,193 - -0.6 1,001,247 - +1.0 1,001,310 + -2.5 1,001,310 + +0.5 1,001,375 - -1.8 1,001,387 + +0.5 1,001,387 + -0.8 1,001,441 - CSW01_04800 0.11 +0.5 1,001,516 - CSW01_04800 0.14 +0.2 1,001,564 - CSW01_04800 0.16 -2.1 1,001,564 - CSW01_04800 0.16 -0.1
Or see this region's nucleotide sequence