Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04425

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04415 and CSW01_04420 are separated by 49 nucleotidesCSW01_04420 and CSW01_04425 are separated by 54 nucleotidesCSW01_04425 and CSW01_04430 overlap by 32 nucleotidesCSW01_04430 and CSW01_04435 overlap by 10 nucleotides CSW01_04415: CSW01_04415 - molecular chaperone DnaJ, at 921,270 to 922,415 _04415 CSW01_04420: CSW01_04420 - prepilin-type cleavage/methylation domain-containing protein, at 922,465 to 922,908 _04420 CSW01_04425: CSW01_04425 - general secretion pathway protein GspH, at 922,963 to 923,517 _04425 CSW01_04430: CSW01_04430 - pilus assembly protein PilW, at 923,486 to 924,088 _04430 CSW01_04435: CSW01_04435 - hypothetical protein, at 924,079 to 925,320 _04435 Position (kb) 922 923 924Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 922.312 kb on + strandat 922.355 kb on + strandat 922.370 kb on - strandat 922.520 kb on + strand, within CSW01_04420at 922.520 kb on + strand, within CSW01_04420at 922.788 kb on - strand, within CSW01_04420at 923.013 kb on + strandat 923.192 kb on - strand, within CSW01_04425at 923.211 kb on + strand, within CSW01_04425at 923.217 kb on + strand, within CSW01_04425at 923.244 kb on + strand, within CSW01_04425at 923.247 kb on - strand, within CSW01_04425at 923.260 kb on - strand, within CSW01_04425at 923.293 kb on - strand, within CSW01_04425at 923.303 kb on - strand, within CSW01_04425at 923.342 kb on - strand, within CSW01_04425at 923.352 kb on + strand, within CSW01_04425at 923.368 kb on + strand, within CSW01_04425at 923.446 kb on + strand, within CSW01_04425at 923.446 kb on + strand, within CSW01_04425at 923.457 kb on + strand, within CSW01_04425at 923.526 kb on + strandat 923.526 kb on + strandat 923.534 kb on - strandat 923.534 kb on - strandat 923.534 kb on - strandat 923.581 kb on - strand, within CSW01_04430at 923.581 kb on - strand, within CSW01_04430at 923.584 kb on + strand, within CSW01_04430at 923.621 kb on + strand, within CSW01_04430at 923.664 kb on + strand, within CSW01_04430at 923.664 kb on + strand, within CSW01_04430at 923.672 kb on - strand, within CSW01_04430at 923.672 kb on - strand, within CSW01_04430at 923.702 kb on + strand, within CSW01_04430at 923.702 kb on + strand, within CSW01_04430at 923.710 kb on - strand, within CSW01_04430at 923.710 kb on - strand, within CSW01_04430at 923.737 kb on + strand, within CSW01_04430at 923.745 kb on - strand, within CSW01_04430at 923.755 kb on + strand, within CSW01_04430at 923.763 kb on - strand, within CSW01_04430at 923.872 kb on - strand, within CSW01_04430at 923.873 kb on + strand, within CSW01_04430at 923.881 kb on - strand, within CSW01_04430at 923.883 kb on + strand, within CSW01_04430at 923.883 kb on + strand, within CSW01_04430at 923.883 kb on + strand, within CSW01_04430at 923.883 kb on + strand, within CSW01_04430at 923.887 kb on + strand, within CSW01_04430at 923.891 kb on - strand, within CSW01_04430at 923.891 kb on - strand, within CSW01_04430at 923.891 kb on - strand, within CSW01_04430at 923.891 kb on - strand, within CSW01_04430at 923.965 kb on + strand, within CSW01_04430at 923.991 kb on + strand, within CSW01_04430at 924.043 kb on + strandat 924.043 kb on + strandat 924.057 kb on + strandat 924.057 kb on + strandat 924.072 kb on - strandat 924.123 kb on - strandat 924.128 kb on + strandat 924.138 kb on + strandat 924.192 kb on + strandat 924.192 kb on + strandat 924.192 kb on + strandat 924.192 kb on + strandat 924.218 kb on + strand, within CSW01_04435at 924.231 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.239 kb on - strand, within CSW01_04435at 924.239 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.246 kb on + strand, within CSW01_04435at 924.246 kb on + strand, within CSW01_04435at 924.246 kb on + strand, within CSW01_04435at 924.246 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.252 kb on + strand, within CSW01_04435at 924.254 kb on - strand, within CSW01_04435at 924.254 kb on - strand, within CSW01_04435at 924.254 kb on - strand, within CSW01_04435at 924.254 kb on - strand, within CSW01_04435at 924.254 kb on - strand, within CSW01_04435at 924.254 kb on - strand, within CSW01_04435at 924.258 kb on - strand, within CSW01_04435at 924.258 kb on - strand, within CSW01_04435at 924.258 kb on - strand, within CSW01_04435at 924.258 kb on - strand, within CSW01_04435at 924.258 kb on - strand, within CSW01_04435at 924.294 kb on + strand, within CSW01_04435at 924.297 kb on + strand, within CSW01_04435at 924.310 kb on + strand, within CSW01_04435at 924.318 kb on - strand, within CSW01_04435at 924.318 kb on - strand, within CSW01_04435at 924.320 kb on - strand, within CSW01_04435at 924.325 kb on - strand, within CSW01_04435at 924.329 kb on + strand, within CSW01_04435at 924.331 kb on - strand, within CSW01_04435at 924.361 kb on + strand, within CSW01_04435at 924.362 kb on + strand, within CSW01_04435at 924.363 kb on + strand, within CSW01_04435at 924.363 kb on + strand, within CSW01_04435at 924.364 kb on - strand, within CSW01_04435at 924.374 kb on + strand, within CSW01_04435at 924.393 kb on - strand, within CSW01_04435

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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922,312 + -0.6
922,355 + +0.0
922,370 - -1.2
922,520 + CSW01_04420 0.12 +1.0
922,520 + CSW01_04420 0.12 +1.0
922,788 - CSW01_04420 0.73 +1.3
923,013 + +1.4
923,192 - CSW01_04425 0.41 +0.4
923,211 + CSW01_04425 0.45 +1.1
923,217 + CSW01_04425 0.46 +0.5
923,244 + CSW01_04425 0.51 +1.8
923,247 - CSW01_04425 0.51 +1.0
923,260 - CSW01_04425 0.54 +1.2
923,293 - CSW01_04425 0.59 -0.2
923,303 - CSW01_04425 0.61 -0.4
923,342 - CSW01_04425 0.68 -0.5
923,352 + CSW01_04425 0.70 +0.8
923,368 + CSW01_04425 0.73 +1.2
923,446 + CSW01_04425 0.87 -1.8
923,446 + CSW01_04425 0.87 -2.5
923,457 + CSW01_04425 0.89 -0.2
923,526 + -4.1
923,526 + +0.2
923,534 - +0.2
923,534 - +0.8
923,534 - -0.5
923,581 - CSW01_04430 0.16 -0.8
923,581 - CSW01_04430 0.16 +0.3
923,584 + CSW01_04430 0.16 -1.7
923,621 + CSW01_04430 0.22 -0.5
923,664 + CSW01_04430 0.30 +0.6
923,664 + CSW01_04430 0.30 -0.7
923,672 - CSW01_04430 0.31 -0.7
923,672 - CSW01_04430 0.31 +0.6
923,702 + CSW01_04430 0.36 -0.9
923,702 + CSW01_04430 0.36 +1.3
923,710 - CSW01_04430 0.37 -1.2
923,710 - CSW01_04430 0.37 +1.0
923,737 + CSW01_04430 0.42 +0.6
923,745 - CSW01_04430 0.43 -0.0
923,755 + CSW01_04430 0.45 +0.2
923,763 - CSW01_04430 0.46 -1.9
923,872 - CSW01_04430 0.64 -1.1
923,873 + CSW01_04430 0.64 +0.3
923,881 - CSW01_04430 0.66 +0.7
923,883 + CSW01_04430 0.66 -0.9
923,883 + CSW01_04430 0.66 -2.2
923,883 + CSW01_04430 0.66 +1.2
923,883 + CSW01_04430 0.66 -2.2
923,887 + CSW01_04430 0.67 +0.2
923,891 - CSW01_04430 0.67 +0.7
923,891 - CSW01_04430 0.67 -0.4
923,891 - CSW01_04430 0.67 -0.0
923,891 - CSW01_04430 0.67 -2.7
923,965 + CSW01_04430 0.79 +1.7
923,991 + CSW01_04430 0.84 -0.5
924,043 + -0.9
924,043 + -3.1
924,057 + +1.1
924,057 + +0.7
924,072 - +0.6
924,123 - +0.1
924,128 + +0.7
924,138 + -0.6
924,192 + +0.1
924,192 + -4.6
924,192 + -1.5
924,192 + -0.2
924,218 + CSW01_04435 0.11 -0.7
924,231 + CSW01_04435 0.12 -1.2
924,236 + CSW01_04435 0.13 +0.7
924,236 + CSW01_04435 0.13 -0.5
924,236 + CSW01_04435 0.13 +0.3
924,236 + CSW01_04435 0.13 -0.0
924,236 + CSW01_04435 0.13 -2.0
924,236 + CSW01_04435 0.13 +0.4
924,236 + CSW01_04435 0.13 -4.3
924,239 - CSW01_04435 0.13 -1.0
924,239 - CSW01_04435 0.13 -3.9
924,244 - CSW01_04435 0.13 -0.1
924,244 - CSW01_04435 0.13 -3.7
924,244 - CSW01_04435 0.13 +0.2
924,244 - CSW01_04435 0.13 +0.6
924,244 - CSW01_04435 0.13 -0.3
924,244 - CSW01_04435 0.13 +0.5
924,244 - CSW01_04435 0.13 +0.3
924,244 - CSW01_04435 0.13 -2.1
924,244 - CSW01_04435 0.13 -1.2
924,246 + CSW01_04435 0.13 -0.5
924,246 + CSW01_04435 0.13 +0.6
924,246 + CSW01_04435 0.13 -0.4
924,246 + CSW01_04435 0.13 -0.1
924,250 + CSW01_04435 0.14 -3.4
924,250 + CSW01_04435 0.14 -0.7
924,250 + CSW01_04435 0.14 +0.3
924,250 + CSW01_04435 0.14 +1.0
924,250 + CSW01_04435 0.14 -2.7
924,250 + CSW01_04435 0.14 -0.9
924,250 + CSW01_04435 0.14 +1.7
924,250 + CSW01_04435 0.14 -0.8
924,250 + CSW01_04435 0.14 +0.0
924,250 + CSW01_04435 0.14 -1.7
924,250 + CSW01_04435 0.14 -1.3
924,250 + CSW01_04435 0.14 -2.7
924,250 + CSW01_04435 0.14 +1.7
924,250 + CSW01_04435 0.14 -0.6
924,250 + CSW01_04435 0.14 +0.2
924,252 + CSW01_04435 0.14 +0.9
924,254 - CSW01_04435 0.14 +2.4
924,254 - CSW01_04435 0.14 -0.7
924,254 - CSW01_04435 0.14 +1.8
924,254 - CSW01_04435 0.14 -3.2
924,254 - CSW01_04435 0.14 -0.0
924,254 - CSW01_04435 0.14 +0.5
924,258 - CSW01_04435 0.14 -0.3
924,258 - CSW01_04435 0.14 +1.7
924,258 - CSW01_04435 0.14 -3.2
924,258 - CSW01_04435 0.14 -0.9
924,258 - CSW01_04435 0.14 -1.5
924,294 + CSW01_04435 0.17 -1.1
924,297 + CSW01_04435 0.18 +1.2
924,310 + CSW01_04435 0.19 +0.7
924,318 - CSW01_04435 0.19 -0.5
924,318 - CSW01_04435 0.19 +0.0
924,320 - CSW01_04435 0.19 -0.9
924,325 - CSW01_04435 0.20 -3.6
924,329 + CSW01_04435 0.20 +0.2
924,331 - CSW01_04435 0.20 +0.9
924,361 + CSW01_04435 0.23 -1.6
924,362 + CSW01_04435 0.23 +0.6
924,363 + CSW01_04435 0.23 +1.7
924,363 + CSW01_04435 0.23 -0.1
924,364 - CSW01_04435 0.23 -0.5
924,374 + CSW01_04435 0.24 +0.6
924,393 - CSW01_04435 0.25 -0.2

Or see this region's nucleotide sequence