Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04365 and CSW01_04375 are separated by 601 nucleotides CSW01_04375 and CSW01_04380 are separated by 183 nucleotides CSW01_04380 and CSW01_04385 overlap by 4 nucleotides
CSW01_04365: CSW01_04365 - integrase, at 911,595 to 912,863
_04365
CSW01_04375: CSW01_04375 - SsrA-binding protein, at 913,465 to 913,950
_04375
CSW01_04380: CSW01_04380 - ubiquinone-binding protein, at 914,134 to 914,568
_04380
CSW01_04385: CSW01_04385 - RnfH family protein, at 914,565 to 914,876
_04385
Position (kb) 913
914 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 912.482 kb on - strand, within CSW01_04365 at 912.520 kb on + strand, within CSW01_04365 at 912.539 kb on + strand, within CSW01_04365 at 912.539 kb on + strand, within CSW01_04365 at 912.547 kb on - strand, within CSW01_04365 at 912.547 kb on - strand, within CSW01_04365 at 912.687 kb on + strand, within CSW01_04365 at 912.687 kb on + strand, within CSW01_04365 at 912.687 kb on + strand, within CSW01_04365 at 912.695 kb on - strand, within CSW01_04365 at 912.740 kb on + strand at 912.741 kb on - strand at 912.748 kb on - strand at 912.748 kb on - strand at 912.828 kb on + strand at 912.900 kb on + strand at 913.258 kb on + strand at 913.278 kb on - strand at 913.278 kb on - strand at 913.278 kb on - strand at 913.400 kb on + strand at 913.458 kb on + strand at 913.518 kb on - strand, within CSW01_04375 at 913.587 kb on + strand, within CSW01_04375 at 913.595 kb on - strand, within CSW01_04375 at 913.699 kb on + strand, within CSW01_04375 at 913.794 kb on - strand, within CSW01_04375 at 913.842 kb on + strand, within CSW01_04375 at 914.014 kb on - strand at 914.035 kb on - strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.041 kb on + strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.062 kb on + strand at 914.070 kb on + strand at 914.070 kb on - strand at 914.080 kb on - strand at 914.118 kb on + strand at 914.126 kb on - strand at 914.553 kb on + strand at 914.553 kb on + strand at 914.852 kb on - strand at 914.852 kb on - strand at 914.857 kb on - strand at 914.918 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 912,482 - CSW01_04365 0.70 +1.8 912,520 + CSW01_04365 0.73 +1.3 912,539 + CSW01_04365 0.74 -1.7 912,539 + CSW01_04365 0.74 +3.0 912,547 - CSW01_04365 0.75 -0.3 912,547 - CSW01_04365 0.75 +0.5 912,687 + CSW01_04365 0.86 -0.9 912,687 + CSW01_04365 0.86 -2.3 912,687 + CSW01_04365 0.86 -0.5 912,695 - CSW01_04365 0.87 -0.2 912,740 + -1.1 912,741 - +2.2 912,748 - -3.4 912,748 - +0.6 912,828 + -1.7 912,900 + +1.2 913,258 + -0.7 913,278 - -0.5 913,278 - +0.9 913,278 - -2.7 913,400 + +1.2 913,458 + +1.0 913,518 - CSW01_04375 0.11 -2.7 913,587 + CSW01_04375 0.25 -1.9 913,595 - CSW01_04375 0.27 -0.1 913,699 + CSW01_04375 0.48 -0.8 913,794 - CSW01_04375 0.68 -1.7 913,842 + CSW01_04375 0.78 -0.6 914,014 - -2.2 914,035 - +0.1 914,039 + -3.1 914,039 + -2.8 914,039 + +1.0 914,039 + +1.6 914,039 + -2.2 914,039 + +1.7 914,039 + +0.4 914,039 + -1.6 914,039 + -0.1 914,039 + -1.1 914,041 + +0.6 914,047 - -3.9 914,047 - +0.2 914,047 - +2.1 914,047 - +0.1 914,047 - +0.4 914,047 - -0.2 914,047 - -2.2 914,047 - +0.5 914,047 - +0.8 914,047 - -0.1 914,047 - -0.5 914,047 - -1.5 914,047 - -1.3 914,062 + +0.5 914,070 + +0.6 914,070 - -3.0 914,080 - -2.3 914,118 + +0.6 914,126 - -2.0 914,553 + +0.6 914,553 + -1.1 914,852 - -1.7 914,852 - -1.2 914,857 - -1.9 914,918 + -0.7
Or see this region's nucleotide sequence