Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04245

Experiment: ICP3_phage_4.1_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_04240 and CSW01_04245 are separated by 109 nucleotidesCSW01_04245 and CSW01_04250 are separated by 275 nucleotides CSW01_04240: CSW01_04240 - peptidase, at 883,464 to 884,402 _04240 CSW01_04245: CSW01_04245 - 2-Cys peroxiredoxin, at 884,512 to 885,006 _04245 CSW01_04250: CSW01_04250 - toxin coregulated pilus biosynthesis protein I, at 885,282 to 887,144 _04250 Position (kb) 884 885 886Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 883.533 kb on + strandat 883.533 kb on + strandat 883.541 kb on - strandat 883.541 kb on - strandat 883.551 kb on - strandat 883.570 kb on + strand, within CSW01_04240at 883.572 kb on + strand, within CSW01_04240at 883.580 kb on + strand, within CSW01_04240at 883.580 kb on - strand, within CSW01_04240at 883.583 kb on - strand, within CSW01_04240at 883.588 kb on - strand, within CSW01_04240at 883.593 kb on - strand, within CSW01_04240at 883.598 kb on - strand, within CSW01_04240at 883.598 kb on - strand, within CSW01_04240at 883.607 kb on - strand, within CSW01_04240at 883.669 kb on + strand, within CSW01_04240at 883.679 kb on + strand, within CSW01_04240at 883.679 kb on + strand, within CSW01_04240at 883.682 kb on + strand, within CSW01_04240at 883.682 kb on + strand, within CSW01_04240at 883.687 kb on + strand, within CSW01_04240at 883.687 kb on + strand, within CSW01_04240at 883.687 kb on + strand, within CSW01_04240at 883.687 kb on + strand, within CSW01_04240at 883.687 kb on + strand, within CSW01_04240at 883.687 kb on + strand, within CSW01_04240at 883.687 kb on + strand, within CSW01_04240at 883.687 kb on + strand, within CSW01_04240at 883.687 kb on + strand, within CSW01_04240at 883.687 kb on + strand, within CSW01_04240at 883.687 kb on + strand, within CSW01_04240at 883.687 kb on - strand, within CSW01_04240at 883.687 kb on - strand, within CSW01_04240at 883.687 kb on - strand, within CSW01_04240at 883.690 kb on - strand, within CSW01_04240at 883.692 kb on + strand, within CSW01_04240at 883.692 kb on + strand, within CSW01_04240at 883.692 kb on + strand, within CSW01_04240at 883.692 kb on + strand, within CSW01_04240at 883.692 kb on + strand, within CSW01_04240at 883.692 kb on + strand, within CSW01_04240at 883.692 kb on + strand, within CSW01_04240at 883.692 kb on + strand, within CSW01_04240at 883.695 kb on - strand, within CSW01_04240at 883.700 kb on - strand, within CSW01_04240at 883.700 kb on - strand, within CSW01_04240at 883.700 kb on - strand, within CSW01_04240at 883.700 kb on - strand, within CSW01_04240at 883.700 kb on - strand, within CSW01_04240at 883.703 kb on - strand, within CSW01_04240at 883.705 kb on + strand, within CSW01_04240at 883.705 kb on + strand, within CSW01_04240at 883.708 kb on - strand, within CSW01_04240at 883.841 kb on - strand, within CSW01_04240at 883.908 kb on - strand, within CSW01_04240at 883.926 kb on - strand, within CSW01_04240at 883.934 kb on - strand, within CSW01_04240at 883.935 kb on + strand, within CSW01_04240at 883.953 kb on + strand, within CSW01_04240at 883.953 kb on + strand, within CSW01_04240at 883.961 kb on - strand, within CSW01_04240at 883.961 kb on - strand, within CSW01_04240at 883.998 kb on + strand, within CSW01_04240at 884.006 kb on - strand, within CSW01_04240at 884.013 kb on + strand, within CSW01_04240at 884.013 kb on + strand, within CSW01_04240at 884.021 kb on - strand, within CSW01_04240at 884.054 kb on + strand, within CSW01_04240at 884.054 kb on + strand, within CSW01_04240at 884.062 kb on - strand, within CSW01_04240at 884.067 kb on + strand, within CSW01_04240at 884.075 kb on - strand, within CSW01_04240at 884.075 kb on - strand, within CSW01_04240at 884.112 kb on + strand, within CSW01_04240at 884.112 kb on + strand, within CSW01_04240at 884.112 kb on + strand, within CSW01_04240at 884.112 kb on + strand, within CSW01_04240at 884.112 kb on + strand, within CSW01_04240at 884.120 kb on - strand, within CSW01_04240at 884.129 kb on - strand, within CSW01_04240at 884.150 kb on + strand, within CSW01_04240at 884.150 kb on + strand, within CSW01_04240at 884.150 kb on + strand, within CSW01_04240at 884.166 kb on - strand, within CSW01_04240at 884.224 kb on + strand, within CSW01_04240at 884.225 kb on - strand, within CSW01_04240at 884.238 kb on + strand, within CSW01_04240at 884.243 kb on + strand, within CSW01_04240at 884.282 kb on - strand, within CSW01_04240at 884.282 kb on - strand, within CSW01_04240at 884.282 kb on - strand, within CSW01_04240at 884.319 kb on + strandat 884.319 kb on + strandat 884.337 kb on - strandat 884.339 kb on - strandat 884.477 kb on + strandat 884.477 kb on + strandat 884.485 kb on - strandat 884.576 kb on - strand, within CSW01_04245at 884.585 kb on + strand, within CSW01_04245at 884.593 kb on - strand, within CSW01_04245at 884.593 kb on - strand, within CSW01_04245at 884.593 kb on - strand, within CSW01_04245at 884.593 kb on - strand, within CSW01_04245at 884.593 kb on - strand, within CSW01_04245at 884.613 kb on - strand, within CSW01_04245at 884.613 kb on - strand, within CSW01_04245at 884.740 kb on + strand, within CSW01_04245at 884.740 kb on + strand, within CSW01_04245at 884.743 kb on - strand, within CSW01_04245at 884.748 kb on - strand, within CSW01_04245at 884.748 kb on - strand, within CSW01_04245at 884.761 kb on + strand, within CSW01_04245at 884.761 kb on + strand, within CSW01_04245at 884.761 kb on + strand, within CSW01_04245at 884.766 kb on + strand, within CSW01_04245at 884.769 kb on - strand, within CSW01_04245at 884.769 kb on - strand, within CSW01_04245at 884.769 kb on - strand, within CSW01_04245at 884.784 kb on + strand, within CSW01_04245at 884.784 kb on + strand, within CSW01_04245at 884.784 kb on + strand, within CSW01_04245at 884.784 kb on + strand, within CSW01_04245at 884.786 kb on + strand, within CSW01_04245at 884.789 kb on + strand, within CSW01_04245at 884.789 kb on + strand, within CSW01_04245at 884.792 kb on - strand, within CSW01_04245at 884.792 kb on - strand, within CSW01_04245at 884.792 kb on - strand, within CSW01_04245at 884.792 kb on - strand, within CSW01_04245at 884.792 kb on - strand, within CSW01_04245at 884.794 kb on + strand, within CSW01_04245at 884.797 kb on - strand, within CSW01_04245at 884.804 kb on - strand, within CSW01_04245at 884.819 kb on - strand, within CSW01_04245at 884.819 kb on - strand, within CSW01_04245at 884.849 kb on - strand, within CSW01_04245at 884.849 kb on - strand, within CSW01_04245at 884.861 kb on + strand, within CSW01_04245at 884.861 kb on + strand, within CSW01_04245at 884.869 kb on - strand, within CSW01_04245at 884.906 kb on - strand, within CSW01_04245at 884.928 kb on - strand, within CSW01_04245at 884.928 kb on - strand, within CSW01_04245at 884.933 kb on - strand, within CSW01_04245at 885.076 kb on + strandat 885.077 kb on - strandat 885.084 kb on - strandat 885.085 kb on + strandat 885.092 kb on - strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.119 kb on + strandat 885.119 kb on - strandat 885.127 kb on - strandat 885.147 kb on - strandat 885.198 kb on + strandat 885.198 kb on + strandat 885.201 kb on + strandat 885.201 kb on + strandat 885.201 kb on + strandat 885.201 kb on + strandat 885.201 kb on + strandat 885.201 kb on + strandat 885.201 kb on + strandat 885.201 kb on + strandat 885.201 kb on + strandat 885.201 kb on + strandat 885.201 kb on - strandat 885.201 kb on - strandat 885.201 kb on - strandat 885.208 kb on + strandat 885.208 kb on + strandat 885.209 kb on - strandat 885.209 kb on - strandat 885.209 kb on - strandat 885.209 kb on - strandat 885.212 kb on + strandat 885.217 kb on - strandat 885.256 kb on + strandat 885.256 kb on + strandat 885.262 kb on - strandat 885.264 kb on - strandat 885.264 kb on - strandat 885.264 kb on - strandat 885.264 kb on - strandat 885.264 kb on - strandat 885.264 kb on - strandat 885.346 kb on - strandat 885.356 kb on - strandat 885.370 kb on - strandat 885.465 kb on + strandat 885.470 kb on + strand, within CSW01_04250at 885.480 kb on + strand, within CSW01_04250at 885.480 kb on - strand, within CSW01_04250at 885.518 kb on + strand, within CSW01_04250at 885.526 kb on - strand, within CSW01_04250at 885.536 kb on + strand, within CSW01_04250at 885.575 kb on + strand, within CSW01_04250at 885.575 kb on + strand, within CSW01_04250at 885.575 kb on + strand, within CSW01_04250at 885.583 kb on - strand, within CSW01_04250at 885.583 kb on - strand, within CSW01_04250at 885.583 kb on - strand, within CSW01_04250at 885.596 kb on - strand, within CSW01_04250at 885.596 kb on - strand, within CSW01_04250at 885.612 kb on + strand, within CSW01_04250at 885.668 kb on + strand, within CSW01_04250at 885.668 kb on + strand, within CSW01_04250at 885.676 kb on - strand, within CSW01_04250at 885.684 kb on - strand, within CSW01_04250at 885.713 kb on + strand, within CSW01_04250at 885.714 kb on + strand, within CSW01_04250at 885.714 kb on + strand, within CSW01_04250at 885.714 kb on + strand, within CSW01_04250at 885.714 kb on + strand, within CSW01_04250at 885.714 kb on + strand, within CSW01_04250at 885.714 kb on + strand, within CSW01_04250at 885.716 kb on + strand, within CSW01_04250at 885.719 kb on - strand, within CSW01_04250at 885.722 kb on - strand, within CSW01_04250at 885.722 kb on - strand, within CSW01_04250at 885.722 kb on - strand, within CSW01_04250at 885.724 kb on - strand, within CSW01_04250at 885.724 kb on - strand, within CSW01_04250at 885.741 kb on - strand, within CSW01_04250at 885.943 kb on + strand, within CSW01_04250at 885.943 kb on + strand, within CSW01_04250at 885.943 kb on + strand, within CSW01_04250at 885.950 kb on + strand, within CSW01_04250at 885.950 kb on + strand, within CSW01_04250at 885.950 kb on + strand, within CSW01_04250at 885.951 kb on - strand, within CSW01_04250at 885.951 kb on - strand, within CSW01_04250at 885.951 kb on - strand, within CSW01_04250at 885.951 kb on - strand, within CSW01_04250at 885.951 kb on - strand, within CSW01_04250at 885.957 kb on + strand, within CSW01_04250at 885.958 kb on - strand, within CSW01_04250at 885.958 kb on - strand, within CSW01_04250at 885.965 kb on - strand, within CSW01_04250at 885.988 kb on + strand, within CSW01_04250at 885.996 kb on - strand, within CSW01_04250

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
remove
883,533 + -3.6
883,533 + -0.4
883,541 - +1.0
883,541 - -0.1
883,551 - -0.9
883,570 + CSW01_04240 0.11 -1.4
883,572 + CSW01_04240 0.12 +1.0
883,580 + CSW01_04240 0.12 +0.5
883,580 - CSW01_04240 0.12 -1.0
883,583 - CSW01_04240 0.13 -1.8
883,588 - CSW01_04240 0.13 -1.8
883,593 - CSW01_04240 0.14 +1.0
883,598 - CSW01_04240 0.14 +0.8
883,598 - CSW01_04240 0.14 -0.7
883,607 - CSW01_04240 0.15 -2.5
883,669 + CSW01_04240 0.22 -0.5
883,679 + CSW01_04240 0.23 +0.9
883,679 + CSW01_04240 0.23 -0.5
883,682 + CSW01_04240 0.23 +1.2
883,682 + CSW01_04240 0.23 +1.4
883,687 + CSW01_04240 0.24 +1.2
883,687 + CSW01_04240 0.24 +0.9
883,687 + CSW01_04240 0.24 +0.1
883,687 + CSW01_04240 0.24 -0.8
883,687 + CSW01_04240 0.24 +1.2
883,687 + CSW01_04240 0.24 +1.5
883,687 + CSW01_04240 0.24 -1.6
883,687 + CSW01_04240 0.24 -0.3
883,687 + CSW01_04240 0.24 +0.5
883,687 + CSW01_04240 0.24 +0.4
883,687 + CSW01_04240 0.24 +0.8
883,687 - CSW01_04240 0.24 -4.2
883,687 - CSW01_04240 0.24 -0.1
883,687 - CSW01_04240 0.24 -0.5
883,690 - CSW01_04240 0.24 -1.9
883,692 + CSW01_04240 0.24 +0.2
883,692 + CSW01_04240 0.24 +0.7
883,692 + CSW01_04240 0.24 -1.1
883,692 + CSW01_04240 0.24 +1.3
883,692 + CSW01_04240 0.24 -1.0
883,692 + CSW01_04240 0.24 -1.7
883,692 + CSW01_04240 0.24 -0.1
883,692 + CSW01_04240 0.24 +0.2
883,695 - CSW01_04240 0.25 -1.6
883,700 - CSW01_04240 0.25 -3.9
883,700 - CSW01_04240 0.25 -3.3
883,700 - CSW01_04240 0.25 +1.1
883,700 - CSW01_04240 0.25 +0.2
883,700 - CSW01_04240 0.25 +0.8
883,703 - CSW01_04240 0.25 -1.7
883,705 + CSW01_04240 0.26 +0.3
883,705 + CSW01_04240 0.26 +0.5
883,708 - CSW01_04240 0.26 +0.1
883,841 - CSW01_04240 0.40 -3.7
883,908 - CSW01_04240 0.47 -0.6
883,926 - CSW01_04240 0.49 -2.7
883,934 - CSW01_04240 0.50 -4.1
883,935 + CSW01_04240 0.50 +0.8
883,953 + CSW01_04240 0.52 -0.4
883,953 + CSW01_04240 0.52 -0.3
883,961 - CSW01_04240 0.53 -3.7
883,961 - CSW01_04240 0.53 +0.0
883,998 + CSW01_04240 0.57 +0.4
884,006 - CSW01_04240 0.58 -0.1
884,013 + CSW01_04240 0.58 +0.6
884,013 + CSW01_04240 0.58 -0.1
884,021 - CSW01_04240 0.59 -1.3
884,054 + CSW01_04240 0.63 -2.0
884,054 + CSW01_04240 0.63 +0.8
884,062 - CSW01_04240 0.64 -0.2
884,067 + CSW01_04240 0.64 +0.6
884,075 - CSW01_04240 0.65 -0.1
884,075 - CSW01_04240 0.65 -1.0
884,112 + CSW01_04240 0.69 +0.2
884,112 + CSW01_04240 0.69 +0.5
884,112 + CSW01_04240 0.69 -1.6
884,112 + CSW01_04240 0.69 -4.1
884,112 + CSW01_04240 0.69 +1.3
884,120 - CSW01_04240 0.70 +0.6
884,129 - CSW01_04240 0.71 +1.6
884,150 + CSW01_04240 0.73 +1.2
884,150 + CSW01_04240 0.73 -1.2
884,150 + CSW01_04240 0.73 +0.9
884,166 - CSW01_04240 0.75 -0.4
884,224 + CSW01_04240 0.81 +0.1
884,225 - CSW01_04240 0.81 -0.1
884,238 + CSW01_04240 0.82 -1.0
884,243 + CSW01_04240 0.83 +0.4
884,282 - CSW01_04240 0.87 -0.6
884,282 - CSW01_04240 0.87 -2.4
884,282 - CSW01_04240 0.87 -0.2
884,319 + +0.2
884,319 + -0.4
884,337 - -2.9
884,339 - -1.7
884,477 + -0.2
884,477 + -0.7
884,485 - +0.4
884,576 - CSW01_04245 0.13 +0.0
884,585 + CSW01_04245 0.15 -2.3
884,593 - CSW01_04245 0.16 -0.3
884,593 - CSW01_04245 0.16 +0.8
884,593 - CSW01_04245 0.16 -0.4
884,593 - CSW01_04245 0.16 +2.3
884,593 - CSW01_04245 0.16 +0.0
884,613 - CSW01_04245 0.20 -2.7
884,613 - CSW01_04245 0.20 +0.1
884,740 + CSW01_04245 0.46 +0.5
884,740 + CSW01_04245 0.46 -2.0
884,743 - CSW01_04245 0.47 -0.7
884,748 - CSW01_04245 0.48 +1.3
884,748 - CSW01_04245 0.48 -1.9
884,761 + CSW01_04245 0.50 -0.9
884,761 + CSW01_04245 0.50 +0.2
884,761 + CSW01_04245 0.50 +0.2
884,766 + CSW01_04245 0.51 -3.1
884,769 - CSW01_04245 0.52 -0.1
884,769 - CSW01_04245 0.52 -1.4
884,769 - CSW01_04245 0.52 -1.5
884,784 + CSW01_04245 0.55 -0.5
884,784 + CSW01_04245 0.55 -2.5
884,784 + CSW01_04245 0.55 +0.6
884,784 + CSW01_04245 0.55 +0.9
884,786 + CSW01_04245 0.55 +0.9
884,789 + CSW01_04245 0.56 -2.1
884,789 + CSW01_04245 0.56 +0.5
884,792 - CSW01_04245 0.57 -0.2
884,792 - CSW01_04245 0.57 -3.1
884,792 - CSW01_04245 0.57 -0.7
884,792 - CSW01_04245 0.57 -2.5
884,792 - CSW01_04245 0.57 +1.2
884,794 + CSW01_04245 0.57 +0.5
884,797 - CSW01_04245 0.58 -0.7
884,804 - CSW01_04245 0.59 -3.1
884,819 - CSW01_04245 0.62 -1.4
884,819 - CSW01_04245 0.62 -0.3
884,849 - CSW01_04245 0.68 +0.4
884,849 - CSW01_04245 0.68 -3.0
884,861 + CSW01_04245 0.71 -3.7
884,861 + CSW01_04245 0.71 +1.4
884,869 - CSW01_04245 0.72 -0.4
884,906 - CSW01_04245 0.80 -0.2
884,928 - CSW01_04245 0.84 -1.7
884,928 - CSW01_04245 0.84 +0.2
884,933 - CSW01_04245 0.85 -1.3
885,076 + -0.3
885,077 - +0.3
885,084 - -0.6
885,085 + +1.1
885,092 - +0.4
885,093 - +1.4
885,093 - -0.1
885,093 - -0.6
885,093 - -3.7
885,093 - -4.9
885,119 + +0.6
885,119 - -1.8
885,127 - -0.7
885,147 - -2.1
885,198 + +0.9
885,198 + -0.3
885,201 + -1.7
885,201 + -3.5
885,201 + +2.0
885,201 + -1.4
885,201 + +1.4
885,201 + -1.0
885,201 + +1.0
885,201 + -2.5
885,201 + +0.0
885,201 + -1.7
885,201 - -0.2
885,201 - +0.9
885,201 - -1.0
885,208 + +0.5
885,208 + +0.3
885,209 - -0.9
885,209 - +0.2
885,209 - +0.8
885,209 - -0.4
885,212 + -4.5
885,217 - +1.2
885,256 + -1.0
885,256 + +1.0
885,262 - +0.3
885,264 - +1.9
885,264 - +0.1
885,264 - +0.8
885,264 - -0.1
885,264 - -0.4
885,264 - +0.4
885,346 - +1.1
885,356 - -1.8
885,370 - +0.8
885,465 + -4.5
885,470 + CSW01_04250 0.10 +0.2
885,480 + CSW01_04250 0.11 +1.0
885,480 - CSW01_04250 0.11 +0.7
885,518 + CSW01_04250 0.13 -1.2
885,526 - CSW01_04250 0.13 -3.5
885,536 + CSW01_04250 0.14 -0.3
885,575 + CSW01_04250 0.16 +0.7
885,575 + CSW01_04250 0.16 -2.8
885,575 + CSW01_04250 0.16 -0.0
885,583 - CSW01_04250 0.16 +2.2
885,583 - CSW01_04250 0.16 +0.0
885,583 - CSW01_04250 0.16 -3.8
885,596 - CSW01_04250 0.17 +0.8
885,596 - CSW01_04250 0.17 +0.2
885,612 + CSW01_04250 0.18 +0.7
885,668 + CSW01_04250 0.21 +1.2
885,668 + CSW01_04250 0.21 -0.6
885,676 - CSW01_04250 0.21 +0.4
885,684 - CSW01_04250 0.22 +0.6
885,713 + CSW01_04250 0.23 -4.0
885,714 + CSW01_04250 0.23 +0.3
885,714 + CSW01_04250 0.23 -0.0
885,714 + CSW01_04250 0.23 -2.2
885,714 + CSW01_04250 0.23 -0.0
885,714 + CSW01_04250 0.23 +0.6
885,714 + CSW01_04250 0.23 -2.2
885,716 + CSW01_04250 0.23 -0.6
885,719 - CSW01_04250 0.23 -1.7
885,722 - CSW01_04250 0.24 -1.2
885,722 - CSW01_04250 0.24 -0.6
885,722 - CSW01_04250 0.24 +0.7
885,724 - CSW01_04250 0.24 +1.3
885,724 - CSW01_04250 0.24 +0.8
885,741 - CSW01_04250 0.25 -0.0
885,943 + CSW01_04250 0.35 -1.7
885,943 + CSW01_04250 0.35 -3.3
885,943 + CSW01_04250 0.35 +0.5
885,950 + CSW01_04250 0.36 +1.0
885,950 + CSW01_04250 0.36 -3.1
885,950 + CSW01_04250 0.36 +1.1
885,951 - CSW01_04250 0.36 -1.0
885,951 - CSW01_04250 0.36 -0.7
885,951 - CSW01_04250 0.36 -2.2
885,951 - CSW01_04250 0.36 +0.4
885,951 - CSW01_04250 0.36 +0.9
885,957 + CSW01_04250 0.36 +0.1
885,958 - CSW01_04250 0.36 +1.1
885,958 - CSW01_04250 0.36 +1.0
885,965 - CSW01_04250 0.37 +0.1
885,988 + CSW01_04250 0.38 -0.2
885,996 - CSW01_04250 0.38 -0.2

Or see this region's nucleotide sequence