Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04095

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04090 and CSW01_04095 are separated by 70 nucleotidesCSW01_04095 and CSW01_04100 are separated by 15 nucleotides CSW01_04090: CSW01_04090 - sensor histidine kinase, at 845,024 to 846,721 _04090 CSW01_04095: CSW01_04095 - oxaloacetate decarboxylase subunit beta, at 846,792 to 848,093 _04095 CSW01_04100: CSW01_04100 - oxaloacetate decarboxylase subunit alpha, at 848,109 to 849,908 _04100 Position (kb) 846 847 848 849Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 845.811 kb on - strand, within CSW01_04090at 845.903 kb on + strand, within CSW01_04090at 845.903 kb on + strand, within CSW01_04090at 846.043 kb on + strand, within CSW01_04090at 846.043 kb on + strand, within CSW01_04090at 846.048 kb on + strand, within CSW01_04090at 846.049 kb on + strand, within CSW01_04090at 846.051 kb on - strand, within CSW01_04090at 846.051 kb on - strand, within CSW01_04090at 846.144 kb on + strand, within CSW01_04090at 846.152 kb on - strand, within CSW01_04090at 846.171 kb on + strand, within CSW01_04090at 846.177 kb on + strand, within CSW01_04090at 846.177 kb on + strand, within CSW01_04090at 846.185 kb on - strand, within CSW01_04090at 846.185 kb on - strand, within CSW01_04090at 846.195 kb on + strand, within CSW01_04090at 846.203 kb on - strand, within CSW01_04090at 846.285 kb on - strand, within CSW01_04090at 846.328 kb on + strand, within CSW01_04090at 846.336 kb on - strand, within CSW01_04090at 846.336 kb on - strand, within CSW01_04090at 846.344 kb on + strand, within CSW01_04090at 846.405 kb on + strand, within CSW01_04090at 846.405 kb on + strand, within CSW01_04090at 846.451 kb on + strand, within CSW01_04090at 846.568 kb on - strandat 846.638 kb on + strandat 846.669 kb on - strandat 846.729 kb on + strandat 846.843 kb on - strandat 846.845 kb on - strandat 846.848 kb on - strandat 846.862 kb on - strandat 846.871 kb on - strandat 846.912 kb on - strandat 846.931 kb on + strand, within CSW01_04095at 847.004 kb on - strand, within CSW01_04095at 847.075 kb on + strand, within CSW01_04095at 847.082 kb on - strand, within CSW01_04095at 847.083 kb on - strand, within CSW01_04095at 847.114 kb on - strand, within CSW01_04095at 847.114 kb on - strand, within CSW01_04095at 847.144 kb on + strand, within CSW01_04095at 847.168 kb on + strand, within CSW01_04095at 847.216 kb on + strand, within CSW01_04095at 847.251 kb on - strand, within CSW01_04095at 847.251 kb on - strand, within CSW01_04095at 847.346 kb on + strand, within CSW01_04095at 847.357 kb on + strand, within CSW01_04095at 847.392 kb on + strand, within CSW01_04095at 847.392 kb on + strand, within CSW01_04095at 847.413 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.548 kb on + strand, within CSW01_04095at 847.561 kb on - strand, within CSW01_04095at 847.563 kb on + strand, within CSW01_04095at 847.568 kb on + strand, within CSW01_04095at 847.608 kb on - strand, within CSW01_04095at 847.615 kb on + strand, within CSW01_04095at 847.623 kb on - strand, within CSW01_04095at 847.623 kb on - strand, within CSW01_04095at 847.700 kb on + strand, within CSW01_04095at 847.712 kb on + strand, within CSW01_04095at 847.716 kb on - strand, within CSW01_04095at 847.743 kb on + strand, within CSW01_04095at 847.750 kb on + strand, within CSW01_04095at 847.768 kb on - strand, within CSW01_04095at 847.773 kb on + strand, within CSW01_04095at 847.794 kb on + strand, within CSW01_04095at 847.794 kb on + strand, within CSW01_04095at 847.794 kb on + strand, within CSW01_04095at 847.794 kb on + strand, within CSW01_04095at 847.794 kb on + strand, within CSW01_04095at 847.794 kb on + strand, within CSW01_04095at 847.802 kb on - strand, within CSW01_04095at 847.802 kb on - strand, within CSW01_04095at 847.802 kb on - strand, within CSW01_04095at 847.802 kb on - strand, within CSW01_04095at 847.841 kb on - strand, within CSW01_04095at 847.873 kb on - strand, within CSW01_04095at 847.913 kb on + strand, within CSW01_04095at 847.972 kb on + strandat 847.999 kb on - strandat 848.006 kb on + strandat 848.009 kb on - strandat 848.044 kb on - strandat 848.047 kb on + strandat 848.047 kb on + strandat 848.047 kb on + strandat 848.055 kb on - strandat 848.055 kb on - strandat 848.057 kb on + strandat 848.057 kb on + strandat 848.065 kb on - strandat 848.115 kb on - strandat 848.122 kb on - strandat 848.146 kb on - strandat 848.180 kb on + strandat 848.312 kb on + strand, within CSW01_04100at 848.313 kb on + strand, within CSW01_04100at 848.320 kb on - strand, within CSW01_04100at 848.331 kb on + strand, within CSW01_04100at 848.336 kb on + strand, within CSW01_04100at 848.337 kb on - strand, within CSW01_04100at 848.356 kb on - strand, within CSW01_04100at 848.384 kb on - strand, within CSW01_04100at 848.426 kb on + strand, within CSW01_04100at 848.426 kb on + strand, within CSW01_04100at 848.426 kb on + strand, within CSW01_04100at 848.426 kb on + strand, within CSW01_04100at 848.426 kb on + strand, within CSW01_04100at 848.426 kb on + strand, within CSW01_04100at 848.431 kb on + strand, within CSW01_04100at 848.433 kb on + strand, within CSW01_04100at 848.433 kb on + strand, within CSW01_04100at 848.433 kb on + strand, within CSW01_04100at 848.433 kb on + strand, within CSW01_04100at 848.434 kb on - strand, within CSW01_04100at 848.434 kb on - strand, within CSW01_04100at 848.441 kb on + strand, within CSW01_04100at 848.441 kb on - strand, within CSW01_04100at 848.441 kb on - strand, within CSW01_04100at 848.441 kb on - strand, within CSW01_04100at 848.441 kb on - strand, within CSW01_04100at 848.441 kb on - strand, within CSW01_04100at 848.441 kb on - strand, within CSW01_04100at 848.441 kb on - strand, within CSW01_04100at 848.441 kb on - strand, within CSW01_04100at 848.441 kb on - strand, within CSW01_04100at 848.441 kb on - strand, within CSW01_04100at 848.448 kb on + strand, within CSW01_04100at 848.507 kb on - strand, within CSW01_04100at 848.525 kb on + strand, within CSW01_04100at 848.532 kb on - strand, within CSW01_04100at 848.534 kb on + strand, within CSW01_04100at 848.534 kb on + strand, within CSW01_04100at 848.542 kb on - strand, within CSW01_04100at 848.547 kb on - strand, within CSW01_04100at 848.547 kb on - strand, within CSW01_04100at 848.585 kb on + strand, within CSW01_04100at 848.592 kb on + strand, within CSW01_04100at 848.592 kb on + strand, within CSW01_04100at 848.592 kb on + strand, within CSW01_04100at 848.592 kb on + strand, within CSW01_04100at 848.592 kb on + strand, within CSW01_04100at 848.593 kb on - strand, within CSW01_04100at 848.600 kb on - strand, within CSW01_04100at 848.600 kb on - strand, within CSW01_04100at 848.624 kb on + strand, within CSW01_04100at 848.624 kb on + strand, within CSW01_04100at 848.625 kb on + strand, within CSW01_04100at 848.636 kb on + strand, within CSW01_04100at 848.639 kb on - strand, within CSW01_04100at 848.663 kb on + strand, within CSW01_04100at 848.747 kb on + strand, within CSW01_04100at 848.752 kb on + strand, within CSW01_04100at 848.752 kb on + strand, within CSW01_04100at 848.752 kb on + strand, within CSW01_04100at 848.752 kb on + strand, within CSW01_04100at 848.752 kb on + strand, within CSW01_04100at 848.752 kb on + strand, within CSW01_04100at 848.752 kb on + strand, within CSW01_04100at 848.752 kb on + strand, within CSW01_04100at 848.755 kb on - strand, within CSW01_04100at 848.760 kb on - strand, within CSW01_04100at 848.760 kb on - strand, within CSW01_04100at 848.760 kb on - strand, within CSW01_04100at 848.760 kb on - strand, within CSW01_04100at 848.760 kb on - strand, within CSW01_04100at 848.760 kb on - strand, within CSW01_04100at 848.760 kb on - strand, within CSW01_04100at 848.760 kb on - strand, within CSW01_04100at 848.760 kb on - strand, within CSW01_04100at 848.760 kb on - strand, within CSW01_04100at 848.785 kb on + strand, within CSW01_04100at 848.785 kb on + strand, within CSW01_04100at 848.785 kb on + strand, within CSW01_04100at 848.797 kb on + strand, within CSW01_04100at 848.831 kb on + strand, within CSW01_04100at 848.832 kb on + strand, within CSW01_04100at 848.833 kb on + strand, within CSW01_04100at 848.850 kb on - strand, within CSW01_04100at 848.926 kb on - strand, within CSW01_04100at 849.053 kb on + strand, within CSW01_04100

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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845,811 - CSW01_04090 0.46 -0.3
845,903 + CSW01_04090 0.52 -0.4
845,903 + CSW01_04090 0.52 +1.4
846,043 + CSW01_04090 0.60 +2.3
846,043 + CSW01_04090 0.60 +1.3
846,048 + CSW01_04090 0.60 +0.2
846,049 + CSW01_04090 0.60 -0.4
846,051 - CSW01_04090 0.60 -3.0
846,051 - CSW01_04090 0.60 +1.1
846,144 + CSW01_04090 0.66 -0.9
846,152 - CSW01_04090 0.66 -0.0
846,171 + CSW01_04090 0.68 -2.8
846,177 + CSW01_04090 0.68 -3.9
846,177 + CSW01_04090 0.68 +0.4
846,185 - CSW01_04090 0.68 -0.4
846,185 - CSW01_04090 0.68 -3.0
846,195 + CSW01_04090 0.69 -1.2
846,203 - CSW01_04090 0.69 -0.9
846,285 - CSW01_04090 0.74 -2.4
846,328 + CSW01_04090 0.77 +1.1
846,336 - CSW01_04090 0.77 -3.0
846,336 - CSW01_04090 0.77 +1.9
846,344 + CSW01_04090 0.78 -0.9
846,405 + CSW01_04090 0.81 -1.6
846,405 + CSW01_04090 0.81 +0.9
846,451 + CSW01_04090 0.84 +1.6
846,568 - -2.0
846,638 + +0.7
846,669 - -0.6
846,729 + +0.9
846,843 - +0.3
846,845 - -0.8
846,848 - -2.7
846,862 - +0.9
846,871 - +0.5
846,912 - -2.4
846,931 + CSW01_04095 0.11 +0.6
847,004 - CSW01_04095 0.16 -1.5
847,075 + CSW01_04095 0.22 +1.3
847,082 - CSW01_04095 0.22 -0.3
847,083 - CSW01_04095 0.22 -2.4
847,114 - CSW01_04095 0.25 +0.5
847,114 - CSW01_04095 0.25 +0.6
847,144 + CSW01_04095 0.27 +1.5
847,168 + CSW01_04095 0.29 +1.4
847,216 + CSW01_04095 0.33 -2.0
847,251 - CSW01_04095 0.35 +1.0
847,251 - CSW01_04095 0.35 +1.0
847,346 + CSW01_04095 0.43 -0.5
847,357 + CSW01_04095 0.43 -4.0
847,392 + CSW01_04095 0.46 -2.3
847,392 + CSW01_04095 0.46 -2.9
847,413 + CSW01_04095 0.48 +1.3
847,538 + CSW01_04095 0.57 +0.5
847,538 + CSW01_04095 0.57 +1.1
847,538 + CSW01_04095 0.57 +0.6
847,538 + CSW01_04095 0.57 +0.7
847,538 + CSW01_04095 0.57 -0.8
847,538 + CSW01_04095 0.57 +0.7
847,538 + CSW01_04095 0.57 +0.5
847,538 + CSW01_04095 0.57 +2.3
847,538 + CSW01_04095 0.57 -1.6
847,546 - CSW01_04095 0.58 +2.9
847,546 - CSW01_04095 0.58 -0.7
847,546 - CSW01_04095 0.58 -0.2
847,546 - CSW01_04095 0.58 -2.2
847,546 - CSW01_04095 0.58 +0.4
847,546 - CSW01_04095 0.58 -0.4
847,546 - CSW01_04095 0.58 -3.0
847,548 + CSW01_04095 0.58 -0.7
847,561 - CSW01_04095 0.59 -2.3
847,563 + CSW01_04095 0.59 +0.3
847,568 + CSW01_04095 0.60 +0.1
847,608 - CSW01_04095 0.63 +0.7
847,615 + CSW01_04095 0.63 +0.6
847,623 - CSW01_04095 0.64 -0.3
847,623 - CSW01_04095 0.64 +0.9
847,700 + CSW01_04095 0.70 -0.4
847,712 + CSW01_04095 0.71 -2.9
847,716 - CSW01_04095 0.71 +0.4
847,743 + CSW01_04095 0.73 -0.4
847,750 + CSW01_04095 0.74 +1.1
847,768 - CSW01_04095 0.75 -0.3
847,773 + CSW01_04095 0.75 -1.0
847,794 + CSW01_04095 0.77 +0.6
847,794 + CSW01_04095 0.77 +1.8
847,794 + CSW01_04095 0.77 +1.8
847,794 + CSW01_04095 0.77 -1.0
847,794 + CSW01_04095 0.77 -0.3
847,794 + CSW01_04095 0.77 -2.7
847,802 - CSW01_04095 0.78 +0.5
847,802 - CSW01_04095 0.78 +1.9
847,802 - CSW01_04095 0.78 -0.7
847,802 - CSW01_04095 0.78 -0.3
847,841 - CSW01_04095 0.81 +0.9
847,873 - CSW01_04095 0.83 +0.6
847,913 + CSW01_04095 0.86 +2.3
847,972 + +0.3
847,999 - -0.6
848,006 + +0.0
848,009 - +0.9
848,044 - +0.3
848,047 + +1.3
848,047 + +0.2
848,047 + +2.0
848,055 - -0.7
848,055 - -0.1
848,057 + -0.4
848,057 + +1.4
848,065 - -3.4
848,115 - -1.5
848,122 - -0.4
848,146 - -1.4
848,180 + +0.0
848,312 + CSW01_04100 0.11 +0.4
848,313 + CSW01_04100 0.11 -2.4
848,320 - CSW01_04100 0.12 +0.7
848,331 + CSW01_04100 0.12 -1.7
848,336 + CSW01_04100 0.13 +0.5
848,337 - CSW01_04100 0.13 -2.7
848,356 - CSW01_04100 0.14 -0.7
848,384 - CSW01_04100 0.15 -1.2
848,426 + CSW01_04100 0.18 +0.0
848,426 + CSW01_04100 0.18 -1.9
848,426 + CSW01_04100 0.18 +0.8
848,426 + CSW01_04100 0.18 -0.8
848,426 + CSW01_04100 0.18 +0.0
848,426 + CSW01_04100 0.18 -2.9
848,431 + CSW01_04100 0.18 -3.1
848,433 + CSW01_04100 0.18 +1.4
848,433 + CSW01_04100 0.18 -4.3
848,433 + CSW01_04100 0.18 +1.0
848,433 + CSW01_04100 0.18 -2.2
848,434 - CSW01_04100 0.18 +1.1
848,434 - CSW01_04100 0.18 +0.3
848,441 + CSW01_04100 0.18 -0.0
848,441 - CSW01_04100 0.18 -1.7
848,441 - CSW01_04100 0.18 -0.3
848,441 - CSW01_04100 0.18 +0.3
848,441 - CSW01_04100 0.18 +0.0
848,441 - CSW01_04100 0.18 +0.7
848,441 - CSW01_04100 0.18 +0.7
848,441 - CSW01_04100 0.18 -2.7
848,441 - CSW01_04100 0.18 -1.7
848,441 - CSW01_04100 0.18 -0.2
848,441 - CSW01_04100 0.18 -1.2
848,448 + CSW01_04100 0.19 +1.2
848,507 - CSW01_04100 0.22 +1.8
848,525 + CSW01_04100 0.23 +0.2
848,532 - CSW01_04100 0.23 +0.5
848,534 + CSW01_04100 0.24 +0.9
848,534 + CSW01_04100 0.24 -1.0
848,542 - CSW01_04100 0.24 -0.3
848,547 - CSW01_04100 0.24 -1.3
848,547 - CSW01_04100 0.24 +1.1
848,585 + CSW01_04100 0.26 +0.9
848,592 + CSW01_04100 0.27 +0.3
848,592 + CSW01_04100 0.27 -4.6
848,592 + CSW01_04100 0.27 +0.1
848,592 + CSW01_04100 0.27 -2.7
848,592 + CSW01_04100 0.27 -4.1
848,593 - CSW01_04100 0.27 -0.8
848,600 - CSW01_04100 0.27 +2.4
848,600 - CSW01_04100 0.27 +0.0
848,624 + CSW01_04100 0.29 -2.4
848,624 + CSW01_04100 0.29 +0.2
848,625 + CSW01_04100 0.29 +0.4
848,636 + CSW01_04100 0.29 -0.3
848,639 - CSW01_04100 0.29 -0.1
848,663 + CSW01_04100 0.31 +0.5
848,747 + CSW01_04100 0.35 +1.7
848,752 + CSW01_04100 0.36 -0.3
848,752 + CSW01_04100 0.36 -0.7
848,752 + CSW01_04100 0.36 +2.0
848,752 + CSW01_04100 0.36 -0.6
848,752 + CSW01_04100 0.36 +1.8
848,752 + CSW01_04100 0.36 -3.4
848,752 + CSW01_04100 0.36 +1.3
848,752 + CSW01_04100 0.36 +1.5
848,755 - CSW01_04100 0.36 +1.7
848,760 - CSW01_04100 0.36 +0.4
848,760 - CSW01_04100 0.36 -0.0
848,760 - CSW01_04100 0.36 +0.4
848,760 - CSW01_04100 0.36 +0.5
848,760 - CSW01_04100 0.36 +0.7
848,760 - CSW01_04100 0.36 +1.6
848,760 - CSW01_04100 0.36 -2.6
848,760 - CSW01_04100 0.36 +1.3
848,760 - CSW01_04100 0.36 -0.2
848,760 - CSW01_04100 0.36 +0.9
848,785 + CSW01_04100 0.38 -1.1
848,785 + CSW01_04100 0.38 -3.2
848,785 + CSW01_04100 0.38 -0.5
848,797 + CSW01_04100 0.38 +1.1
848,831 + CSW01_04100 0.40 +0.2
848,832 + CSW01_04100 0.40 -2.0
848,833 + CSW01_04100 0.40 -0.3
848,850 - CSW01_04100 0.41 +1.2
848,926 - CSW01_04100 0.45 +0.0
849,053 + CSW01_04100 0.52 +0.6

Or see this region's nucleotide sequence