Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04055

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04050 and CSW01_04055 are separated by 217 nucleotidesCSW01_04055 and CSW01_04060 are separated by 79 nucleotides CSW01_04050: CSW01_04050 - LysR family transcriptional regulator, at 835,980 to 836,906 _04050 CSW01_04055: CSW01_04055 - alkyl/aryl-sulfatase, at 837,124 to 839,106 _04055 CSW01_04060: CSW01_04060 - alanine:cation symporter family protein, at 839,186 to 840,736 _04060 Position (kb) 837 838 839 840Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 836.166 kb on - strand, within CSW01_04050at 836.166 kb on - strand, within CSW01_04050at 836.289 kb on + strand, within CSW01_04050at 836.289 kb on + strand, within CSW01_04050at 836.294 kb on + strand, within CSW01_04050at 836.417 kb on - strand, within CSW01_04050at 836.417 kb on - strand, within CSW01_04050at 836.430 kb on + strand, within CSW01_04050at 836.435 kb on + strand, within CSW01_04050at 836.495 kb on + strand, within CSW01_04050at 836.510 kb on - strand, within CSW01_04050at 836.510 kb on - strand, within CSW01_04050at 836.568 kb on + strand, within CSW01_04050at 836.576 kb on - strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.633 kb on + strand, within CSW01_04050at 836.714 kb on - strand, within CSW01_04050at 836.716 kb on + strand, within CSW01_04050at 836.716 kb on + strand, within CSW01_04050at 836.716 kb on + strand, within CSW01_04050at 836.719 kb on - strand, within CSW01_04050at 836.724 kb on - strand, within CSW01_04050at 836.724 kb on - strand, within CSW01_04050at 836.724 kb on - strand, within CSW01_04050at 836.724 kb on - strand, within CSW01_04050at 836.746 kb on - strand, within CSW01_04050at 836.799 kb on + strand, within CSW01_04050at 836.953 kb on + strandat 837.076 kb on + strandat 837.214 kb on + strandat 837.227 kb on + strandat 837.255 kb on - strandat 837.312 kb on - strandat 837.462 kb on + strand, within CSW01_04055at 837.513 kb on + strand, within CSW01_04055at 837.576 kb on + strand, within CSW01_04055at 837.610 kb on - strand, within CSW01_04055at 837.624 kb on + strand, within CSW01_04055at 837.629 kb on + strand, within CSW01_04055at 837.634 kb on + strand, within CSW01_04055at 837.639 kb on + strand, within CSW01_04055at 837.645 kb on - strand, within CSW01_04055at 837.645 kb on - strand, within CSW01_04055at 837.645 kb on - strand, within CSW01_04055at 837.645 kb on - strand, within CSW01_04055at 837.673 kb on + strand, within CSW01_04055at 837.673 kb on + strand, within CSW01_04055at 837.681 kb on - strand, within CSW01_04055at 837.702 kb on - strand, within CSW01_04055at 837.843 kb on + strand, within CSW01_04055at 837.885 kb on - strand, within CSW01_04055at 837.921 kb on + strand, within CSW01_04055at 838.014 kb on + strand, within CSW01_04055at 838.014 kb on + strand, within CSW01_04055at 838.014 kb on + strand, within CSW01_04055at 838.014 kb on + strand, within CSW01_04055at 838.014 kb on + strand, within CSW01_04055at 838.014 kb on + strand, within CSW01_04055at 838.014 kb on + strand, within CSW01_04055at 838.021 kb on + strand, within CSW01_04055at 838.022 kb on - strand, within CSW01_04055at 838.022 kb on - strand, within CSW01_04055at 838.022 kb on - strand, within CSW01_04055at 838.022 kb on - strand, within CSW01_04055at 838.022 kb on - strand, within CSW01_04055at 838.062 kb on + strand, within CSW01_04055at 838.062 kb on + strand, within CSW01_04055at 838.062 kb on + strand, within CSW01_04055at 838.062 kb on + strand, within CSW01_04055at 838.063 kb on + strand, within CSW01_04055at 838.070 kb on - strand, within CSW01_04055at 838.079 kb on + strand, within CSW01_04055at 838.079 kb on + strand, within CSW01_04055at 838.087 kb on - strand, within CSW01_04055at 838.094 kb on + strand, within CSW01_04055at 838.109 kb on - strand, within CSW01_04055at 838.165 kb on + strand, within CSW01_04055at 838.254 kb on + strand, within CSW01_04055at 838.313 kb on + strand, within CSW01_04055at 838.335 kb on - strand, within CSW01_04055at 838.366 kb on - strand, within CSW01_04055at 838.392 kb on - strand, within CSW01_04055at 838.399 kb on - strand, within CSW01_04055at 838.449 kb on - strand, within CSW01_04055at 838.474 kb on + strand, within CSW01_04055at 838.482 kb on - strand, within CSW01_04055at 838.497 kb on + strand, within CSW01_04055at 838.529 kb on - strand, within CSW01_04055at 838.584 kb on - strand, within CSW01_04055at 838.592 kb on - strand, within CSW01_04055at 838.624 kb on - strand, within CSW01_04055at 838.656 kb on + strand, within CSW01_04055at 838.656 kb on + strand, within CSW01_04055at 838.664 kb on - strand, within CSW01_04055at 838.697 kb on - strand, within CSW01_04055at 838.754 kb on + strand, within CSW01_04055at 838.762 kb on - strand, within CSW01_04055at 838.762 kb on - strand, within CSW01_04055at 838.846 kb on - strand, within CSW01_04055at 838.943 kb on + strandat 838.981 kb on + strandat 838.981 kb on + strandat 839.028 kb on - strandat 839.132 kb on + strandat 839.183 kb on + strandat 839.203 kb on + strandat 839.203 kb on + strandat 839.206 kb on - strandat 839.211 kb on - strandat 839.269 kb on - strandat 839.425 kb on + strand, within CSW01_04060at 839.436 kb on + strand, within CSW01_04060at 839.450 kb on - strand, within CSW01_04060at 839.481 kb on + strand, within CSW01_04060at 839.506 kb on + strand, within CSW01_04060at 839.514 kb on - strand, within CSW01_04060at 839.533 kb on - strand, within CSW01_04060at 839.559 kb on - strand, within CSW01_04060at 839.561 kb on + strand, within CSW01_04060at 839.563 kb on - strand, within CSW01_04060at 839.580 kb on + strand, within CSW01_04060at 839.621 kb on - strand, within CSW01_04060at 839.647 kb on - strand, within CSW01_04060at 839.669 kb on - strand, within CSW01_04060at 839.720 kb on + strand, within CSW01_04060at 839.728 kb on - strand, within CSW01_04060at 839.730 kb on + strand, within CSW01_04060at 839.732 kb on + strand, within CSW01_04060at 839.732 kb on + strand, within CSW01_04060at 839.740 kb on - strand, within CSW01_04060at 839.839 kb on + strand, within CSW01_04060at 839.847 kb on - strand, within CSW01_04060at 839.847 kb on - strand, within CSW01_04060at 839.848 kb on - strand, within CSW01_04060at 839.862 kb on - strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.871 kb on - strand, within CSW01_04060at 839.871 kb on - strand, within CSW01_04060at 839.871 kb on - strand, within CSW01_04060at 839.871 kb on - strand, within CSW01_04060at 839.871 kb on - strand, within CSW01_04060at 839.871 kb on - strand, within CSW01_04060at 839.888 kb on + strand, within CSW01_04060at 839.896 kb on - strand, within CSW01_04060at 839.900 kb on + strand, within CSW01_04060at 839.900 kb on + strand, within CSW01_04060at 839.900 kb on + strand, within CSW01_04060at 839.908 kb on - strand, within CSW01_04060at 839.908 kb on - strand, within CSW01_04060at 839.908 kb on - strand, within CSW01_04060at 839.908 kb on - strand, within CSW01_04060at 839.919 kb on + strand, within CSW01_04060at 839.927 kb on - strand, within CSW01_04060

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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836,166 - CSW01_04050 0.20 -2.8
836,166 - CSW01_04050 0.20 +1.6
836,289 + CSW01_04050 0.33 -0.0
836,289 + CSW01_04050 0.33 +0.5
836,294 + CSW01_04050 0.34 +0.0
836,417 - CSW01_04050 0.47 +2.3
836,417 - CSW01_04050 0.47 +1.7
836,430 + CSW01_04050 0.49 -0.1
836,435 + CSW01_04050 0.49 -1.7
836,495 + CSW01_04050 0.56 -2.1
836,510 - CSW01_04050 0.57 -1.4
836,510 - CSW01_04050 0.57 -0.1
836,568 + CSW01_04050 0.63 -0.3
836,576 - CSW01_04050 0.64 +0.5
836,580 + CSW01_04050 0.65 -0.2
836,580 + CSW01_04050 0.65 +2.6
836,580 + CSW01_04050 0.65 -1.7
836,580 + CSW01_04050 0.65 -2.9
836,580 + CSW01_04050 0.65 -0.5
836,580 + CSW01_04050 0.65 -0.6
836,580 + CSW01_04050 0.65 -0.4
836,588 - CSW01_04050 0.66 +0.3
836,588 - CSW01_04050 0.66 -3.5
836,588 - CSW01_04050 0.66 +0.5
836,588 - CSW01_04050 0.66 -0.4
836,588 - CSW01_04050 0.66 +1.8
836,588 - CSW01_04050 0.66 +0.1
836,588 - CSW01_04050 0.66 +0.8
836,633 + CSW01_04050 0.70 +1.8
836,714 - CSW01_04050 0.79 -2.2
836,716 + CSW01_04050 0.79 -0.2
836,716 + CSW01_04050 0.79 +0.3
836,716 + CSW01_04050 0.79 -0.6
836,719 - CSW01_04050 0.80 -0.3
836,724 - CSW01_04050 0.80 +1.5
836,724 - CSW01_04050 0.80 -1.3
836,724 - CSW01_04050 0.80 +0.6
836,724 - CSW01_04050 0.80 +1.8
836,746 - CSW01_04050 0.83 -0.9
836,799 + CSW01_04050 0.88 +0.5
836,953 + -3.3
837,076 + +0.6
837,214 + -0.5
837,227 + -3.0
837,255 - -1.6
837,312 - +0.5
837,462 + CSW01_04055 0.17 +0.6
837,513 + CSW01_04055 0.20 +0.3
837,576 + CSW01_04055 0.23 +1.0
837,610 - CSW01_04055 0.25 +1.0
837,624 + CSW01_04055 0.25 +0.4
837,629 + CSW01_04055 0.25 +0.4
837,634 + CSW01_04055 0.26 -2.3
837,639 + CSW01_04055 0.26 -1.2
837,645 - CSW01_04055 0.26 +0.3
837,645 - CSW01_04055 0.26 -3.0
837,645 - CSW01_04055 0.26 -4.3
837,645 - CSW01_04055 0.26 +0.7
837,673 + CSW01_04055 0.28 -0.5
837,673 + CSW01_04055 0.28 +0.0
837,681 - CSW01_04055 0.28 +0.0
837,702 - CSW01_04055 0.29 +0.8
837,843 + CSW01_04055 0.36 +1.1
837,885 - CSW01_04055 0.38 +1.1
837,921 + CSW01_04055 0.40 -2.9
838,014 + CSW01_04055 0.45 +0.3
838,014 + CSW01_04055 0.45 -0.8
838,014 + CSW01_04055 0.45 +0.4
838,014 + CSW01_04055 0.45 +0.3
838,014 + CSW01_04055 0.45 +0.8
838,014 + CSW01_04055 0.45 +0.4
838,014 + CSW01_04055 0.45 +1.2
838,021 + CSW01_04055 0.45 -1.9
838,022 - CSW01_04055 0.45 +1.5
838,022 - CSW01_04055 0.45 +2.3
838,022 - CSW01_04055 0.45 -0.1
838,022 - CSW01_04055 0.45 +0.9
838,022 - CSW01_04055 0.45 -2.3
838,062 + CSW01_04055 0.47 +1.2
838,062 + CSW01_04055 0.47 -2.2
838,062 + CSW01_04055 0.47 +0.9
838,062 + CSW01_04055 0.47 -0.9
838,063 + CSW01_04055 0.47 -1.0
838,070 - CSW01_04055 0.48 -0.1
838,079 + CSW01_04055 0.48 +1.7
838,079 + CSW01_04055 0.48 -1.9
838,087 - CSW01_04055 0.49 -2.0
838,094 + CSW01_04055 0.49 +1.1
838,109 - CSW01_04055 0.50 +0.1
838,165 + CSW01_04055 0.52 -1.4
838,254 + CSW01_04055 0.57 +1.0
838,313 + CSW01_04055 0.60 -0.9
838,335 - CSW01_04055 0.61 +1.2
838,366 - CSW01_04055 0.63 -1.2
838,392 - CSW01_04055 0.64 +0.7
838,399 - CSW01_04055 0.64 +0.9
838,449 - CSW01_04055 0.67 -0.9
838,474 + CSW01_04055 0.68 +0.5
838,482 - CSW01_04055 0.68 -3.4
838,497 + CSW01_04055 0.69 +0.3
838,529 - CSW01_04055 0.71 +0.6
838,584 - CSW01_04055 0.74 +0.6
838,592 - CSW01_04055 0.74 -2.3
838,624 - CSW01_04055 0.76 -0.4
838,656 + CSW01_04055 0.77 -0.4
838,656 + CSW01_04055 0.77 +1.7
838,664 - CSW01_04055 0.78 -1.9
838,697 - CSW01_04055 0.79 +3.1
838,754 + CSW01_04055 0.82 -1.9
838,762 - CSW01_04055 0.83 -3.6
838,762 - CSW01_04055 0.83 -0.4
838,846 - CSW01_04055 0.87 +0.6
838,943 + -0.8
838,981 + +0.8
838,981 + +1.7
839,028 - +0.8
839,132 + -3.2
839,183 + +0.7
839,203 + +0.2
839,203 + -3.9
839,206 - +0.3
839,211 - +0.8
839,269 - -1.9
839,425 + CSW01_04060 0.15 +0.2
839,436 + CSW01_04060 0.16 -3.9
839,450 - CSW01_04060 0.17 +1.9
839,481 + CSW01_04060 0.19 -0.2
839,506 + CSW01_04060 0.21 +0.8
839,514 - CSW01_04060 0.21 -0.5
839,533 - CSW01_04060 0.22 -0.0
839,559 - CSW01_04060 0.24 +0.8
839,561 + CSW01_04060 0.24 +0.6
839,563 - CSW01_04060 0.24 -0.5
839,580 + CSW01_04060 0.25 -0.8
839,621 - CSW01_04060 0.28 -2.9
839,647 - CSW01_04060 0.30 -0.4
839,669 - CSW01_04060 0.31 -2.3
839,720 + CSW01_04060 0.34 -3.1
839,728 - CSW01_04060 0.35 -2.5
839,730 + CSW01_04060 0.35 -0.4
839,732 + CSW01_04060 0.35 -2.1
839,732 + CSW01_04060 0.35 -0.4
839,740 - CSW01_04060 0.36 -0.1
839,839 + CSW01_04060 0.42 +1.5
839,847 - CSW01_04060 0.43 +0.9
839,847 - CSW01_04060 0.43 +1.0
839,848 - CSW01_04060 0.43 -2.6
839,862 - CSW01_04060 0.44 +0.9
839,863 + CSW01_04060 0.44 +1.3
839,863 + CSW01_04060 0.44 -1.1
839,863 + CSW01_04060 0.44 +0.5
839,863 + CSW01_04060 0.44 +1.8
839,863 + CSW01_04060 0.44 +1.6
839,863 + CSW01_04060 0.44 +0.3
839,863 + CSW01_04060 0.44 +0.6
839,863 + CSW01_04060 0.44 -0.6
839,863 + CSW01_04060 0.44 -0.9
839,863 + CSW01_04060 0.44 -0.2
839,871 - CSW01_04060 0.44 +1.3
839,871 - CSW01_04060 0.44 -1.5
839,871 - CSW01_04060 0.44 -3.5
839,871 - CSW01_04060 0.44 +0.8
839,871 - CSW01_04060 0.44 +0.4
839,871 - CSW01_04060 0.44 -0.2
839,888 + CSW01_04060 0.45 -2.7
839,896 - CSW01_04060 0.46 -0.4
839,900 + CSW01_04060 0.46 -2.4
839,900 + CSW01_04060 0.46 -0.6
839,900 + CSW01_04060 0.46 -0.2
839,908 - CSW01_04060 0.47 +0.7
839,908 - CSW01_04060 0.47 +0.5
839,908 - CSW01_04060 0.47 +0.6
839,908 - CSW01_04060 0.47 -1.9
839,919 + CSW01_04060 0.47 -1.3
839,927 - CSW01_04060 0.48 +0.6

Or see this region's nucleotide sequence