Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03975

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03965 and CSW01_03970 are separated by 304 nucleotidesCSW01_03970 and CSW01_03975 overlap by 20 nucleotidesCSW01_03975 and CSW01_03980 are separated by 207 nucleotides CSW01_03965: CSW01_03965 - alanyl-tRNA editing protein, at 815,781 to 816,698 _03965 CSW01_03970: CSW01_03970 - DNA ligase, at 817,003 to 817,236 _03970 CSW01_03975: CSW01_03975 - exodeoxyribonuclease VII large subunit, at 817,217 to 818,557 _03975 CSW01_03980: CSW01_03980 - IMP dehydrogenase, at 818,765 to 820,228 _03980 Position (kb) 817 818 819Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 816.240 kb on - strand, within CSW01_03965at 816.274 kb on + strand, within CSW01_03965at 816.294 kb on - strand, within CSW01_03965at 816.299 kb on + strand, within CSW01_03965at 816.387 kb on - strand, within CSW01_03965at 816.472 kb on + strand, within CSW01_03965at 816.477 kb on + strand, within CSW01_03965at 816.477 kb on + strand, within CSW01_03965at 816.477 kb on + strand, within CSW01_03965at 816.477 kb on + strand, within CSW01_03965at 816.485 kb on - strand, within CSW01_03965at 816.485 kb on - strand, within CSW01_03965at 816.510 kb on + strand, within CSW01_03965at 816.511 kb on + strand, within CSW01_03965at 816.518 kb on - strand, within CSW01_03965at 816.593 kb on + strand, within CSW01_03965at 816.601 kb on - strand, within CSW01_03965at 816.884 kb on - strandat 816.929 kb on - strandat 816.929 kb on - strandat 816.945 kb on + strandat 816.998 kb on + strandat 817.006 kb on - strandat 817.006 kb on - strandat 817.048 kb on + strand, within CSW01_03970at 817.048 kb on + strand, within CSW01_03970at 817.048 kb on + strand, within CSW01_03970at 817.048 kb on + strand, within CSW01_03970at 817.048 kb on + strand, within CSW01_03970at 817.056 kb on - strand, within CSW01_03970at 817.056 kb on - strand, within CSW01_03970at 817.056 kb on - strand, within CSW01_03970at 817.056 kb on - strand, within CSW01_03970at 817.083 kb on - strand, within CSW01_03970at 817.115 kb on - strand, within CSW01_03970at 817.128 kb on + strand, within CSW01_03970at 817.134 kb on + strand, within CSW01_03970at 817.134 kb on + strand, within CSW01_03970at 817.134 kb on + strand, within CSW01_03970at 817.136 kb on - strand, within CSW01_03970at 817.236 kb on - strandat 817.327 kb on - strandat 817.346 kb on + strandat 817.573 kb on + strand, within CSW01_03975at 817.671 kb on - strand, within CSW01_03975at 817.756 kb on + strand, within CSW01_03975at 817.769 kb on + strand, within CSW01_03975at 817.789 kb on + strand, within CSW01_03975at 817.844 kb on + strand, within CSW01_03975at 817.976 kb on - strand, within CSW01_03975at 817.985 kb on + strand, within CSW01_03975at 818.022 kb on + strand, within CSW01_03975at 818.045 kb on - strand, within CSW01_03975at 818.101 kb on - strand, within CSW01_03975at 818.125 kb on + strand, within CSW01_03975at 818.361 kb on + strand, within CSW01_03975at 818.376 kb on + strand, within CSW01_03975at 818.384 kb on - strand, within CSW01_03975at 818.384 kb on - strand, within CSW01_03975at 818.421 kb on + strand, within CSW01_03975at 818.438 kb on - strandat 818.555 kb on - strandat 818.723 kb on + strandat 818.744 kb on - strandat 818.749 kb on - strandat 818.804 kb on + strandat 818.819 kb on + strandat 818.844 kb on + strandat 818.897 kb on - strandat 819.005 kb on + strand, within CSW01_03980at 819.020 kb on + strand, within CSW01_03980at 819.046 kb on + strand, within CSW01_03980at 819.054 kb on - strand, within CSW01_03980at 819.064 kb on - strand, within CSW01_03980at 819.066 kb on + strand, within CSW01_03980at 819.066 kb on + strand, within CSW01_03980at 819.071 kb on + strand, within CSW01_03980at 819.194 kb on + strand, within CSW01_03980at 819.199 kb on + strand, within CSW01_03980at 819.207 kb on - strand, within CSW01_03980at 819.225 kb on + strand, within CSW01_03980at 819.225 kb on + strand, within CSW01_03980at 819.233 kb on - strand, within CSW01_03980at 819.233 kb on - strand, within CSW01_03980at 819.327 kb on - strand, within CSW01_03980at 819.354 kb on - strand, within CSW01_03980at 819.392 kb on - strand, within CSW01_03980at 819.392 kb on - strand, within CSW01_03980at 819.392 kb on - strand, within CSW01_03980at 819.412 kb on - strand, within CSW01_03980at 819.443 kb on + strand, within CSW01_03980at 819.451 kb on - strand, within CSW01_03980at 819.451 kb on - strand, within CSW01_03980at 819.483 kb on - strand, within CSW01_03980at 819.494 kb on - strand, within CSW01_03980at 819.512 kb on + strand, within CSW01_03980at 819.531 kb on + strand, within CSW01_03980

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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816,240 - CSW01_03965 0.50 -0.1
816,274 + CSW01_03965 0.54 +0.7
816,294 - CSW01_03965 0.56 +0.6
816,299 + CSW01_03965 0.56 -2.9
816,387 - CSW01_03965 0.66 -1.8
816,472 + CSW01_03965 0.75 +1.2
816,477 + CSW01_03965 0.76 +2.2
816,477 + CSW01_03965 0.76 +1.1
816,477 + CSW01_03965 0.76 -0.4
816,477 + CSW01_03965 0.76 -0.5
816,485 - CSW01_03965 0.77 -0.9
816,485 - CSW01_03965 0.77 -3.3
816,510 + CSW01_03965 0.79 +1.8
816,511 + CSW01_03965 0.80 +1.2
816,518 - CSW01_03965 0.80 -0.1
816,593 + CSW01_03965 0.88 -0.5
816,601 - CSW01_03965 0.89 -1.2
816,884 - +1.3
816,929 - -2.3
816,929 - +0.4
816,945 + +2.3
816,998 + +1.3
817,006 - -0.2
817,006 - +0.4
817,048 + CSW01_03970 0.19 +1.5
817,048 + CSW01_03970 0.19 +0.5
817,048 + CSW01_03970 0.19 -0.5
817,048 + CSW01_03970 0.19 +0.9
817,048 + CSW01_03970 0.19 -1.2
817,056 - CSW01_03970 0.23 -0.4
817,056 - CSW01_03970 0.23 -3.4
817,056 - CSW01_03970 0.23 -0.5
817,056 - CSW01_03970 0.23 +0.3
817,083 - CSW01_03970 0.34 -2.2
817,115 - CSW01_03970 0.48 +0.4
817,128 + CSW01_03970 0.53 +2.0
817,134 + CSW01_03970 0.56 +1.4
817,134 + CSW01_03970 0.56 +0.2
817,134 + CSW01_03970 0.56 -0.1
817,136 - CSW01_03970 0.57 -0.3
817,236 - +0.7
817,327 - +1.2
817,346 + -1.0
817,573 + CSW01_03975 0.27 +2.2
817,671 - CSW01_03975 0.34 -1.2
817,756 + CSW01_03975 0.40 -1.1
817,769 + CSW01_03975 0.41 +1.0
817,789 + CSW01_03975 0.43 +1.0
817,844 + CSW01_03975 0.47 -2.4
817,976 - CSW01_03975 0.57 +0.7
817,985 + CSW01_03975 0.57 -1.7
818,022 + CSW01_03975 0.60 +0.2
818,045 - CSW01_03975 0.62 -0.8
818,101 - CSW01_03975 0.66 +0.0
818,125 + CSW01_03975 0.68 +1.6
818,361 + CSW01_03975 0.85 -1.2
818,376 + CSW01_03975 0.86 +1.7
818,384 - CSW01_03975 0.87 +1.7
818,384 - CSW01_03975 0.87 +1.3
818,421 + CSW01_03975 0.90 +2.5
818,438 - -3.9
818,555 - -1.4
818,723 + -4.5
818,744 - -6.1
818,749 - -2.5
818,804 + -3.9
818,819 + -6.1
818,844 + +0.1
818,897 - -2.8
819,005 + CSW01_03980 0.16 -4.5
819,020 + CSW01_03980 0.17 -1.0
819,046 + CSW01_03980 0.19 -0.8
819,054 - CSW01_03980 0.20 -1.4
819,064 - CSW01_03980 0.20 -2.2
819,066 + CSW01_03980 0.21 -4.0
819,066 + CSW01_03980 0.21 -2.2
819,071 + CSW01_03980 0.21 -1.9
819,194 + CSW01_03980 0.29 -2.7
819,199 + CSW01_03980 0.30 -1.6
819,207 - CSW01_03980 0.30 -1.6
819,225 + CSW01_03980 0.31 -1.1
819,225 + CSW01_03980 0.31 -3.5
819,233 - CSW01_03980 0.32 -6.2
819,233 - CSW01_03980 0.32 -0.0
819,327 - CSW01_03980 0.38 -2.9
819,354 - CSW01_03980 0.40 -2.8
819,392 - CSW01_03980 0.43 -4.0
819,392 - CSW01_03980 0.43 -5.1
819,392 - CSW01_03980 0.43 -1.7
819,412 - CSW01_03980 0.44 -4.4
819,443 + CSW01_03980 0.46 -4.0
819,451 - CSW01_03980 0.47 -2.4
819,451 - CSW01_03980 0.47 +0.7
819,483 - CSW01_03980 0.49 -4.8
819,494 - CSW01_03980 0.50 -4.1
819,512 + CSW01_03980 0.51 -3.5
819,531 + CSW01_03980 0.52 -3.2

Or see this region's nucleotide sequence