Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03905 and CSW01_03910 are separated by 13 nucleotides CSW01_03910 and CSW01_03915 are separated by 48 nucleotides CSW01_03915 and CSW01_03920 are separated by 219 nucleotides CSW01_03920 and CSW01_03925 are separated by 203 nucleotides CSW01_03925 and CSW01_03930 are separated by 173 nucleotides
CSW01_03905: CSW01_03905 - chaperone protein HscA, at 802,553 to 804,403
_03905
CSW01_03910: CSW01_03910 - ISC system 2Fe-2S type ferredoxin, at 804,417 to 804,755
_03910
CSW01_03915: CSW01_03915 - Fe-S assembly protein IscX, at 804,804 to 804,998
_03915
CSW01_03920: CSW01_03920 - peptidase B, at 805,218 to 806,507
_03920
CSW01_03925: CSW01_03925 - nucleoside-diphosphate kinase, at 806,711 to 807,139
_03925
CSW01_03930: CSW01_03930 - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 807,313 to 808,434
_03930
Position (kb) 805
806
807 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 804.407 kb on + strand at 804.811 kb on + strand at 804.840 kb on - strand, within CSW01_03915 at 804.982 kb on - strand at 805.066 kb on - strand at 805.075 kb on + strand at 805.084 kb on - strand at 805.193 kb on - strand at 805.262 kb on + strand at 805.299 kb on + strand at 805.299 kb on + strand at 805.338 kb on - strand at 805.367 kb on - strand, within CSW01_03920 at 805.367 kb on - strand, within CSW01_03920 at 805.408 kb on - strand, within CSW01_03920 at 805.439 kb on + strand, within CSW01_03920 at 805.453 kb on - strand, within CSW01_03920 at 805.681 kb on - strand, within CSW01_03920 at 805.702 kb on - strand, within CSW01_03920 at 805.722 kb on - strand, within CSW01_03920 at 805.787 kb on - strand, within CSW01_03920 at 805.810 kb on + strand, within CSW01_03920 at 805.831 kb on + strand, within CSW01_03920 at 805.839 kb on - strand, within CSW01_03920 at 805.839 kb on - strand, within CSW01_03920 at 805.839 kb on - strand, within CSW01_03920 at 805.839 kb on - strand, within CSW01_03920 at 805.879 kb on + strand, within CSW01_03920 at 805.884 kb on + strand, within CSW01_03920 at 805.887 kb on - strand, within CSW01_03920 at 805.887 kb on - strand, within CSW01_03920 at 805.889 kb on + strand, within CSW01_03920 at 805.891 kb on + strand, within CSW01_03920 at 805.892 kb on - strand, within CSW01_03920 at 805.932 kb on - strand, within CSW01_03920 at 805.955 kb on - strand, within CSW01_03920 at 805.955 kb on - strand, within CSW01_03920 at 805.979 kb on - strand, within CSW01_03920 at 806.076 kb on + strand, within CSW01_03920 at 806.084 kb on - strand, within CSW01_03920 at 806.122 kb on + strand, within CSW01_03920 at 806.127 kb on + strand, within CSW01_03920 at 806.130 kb on - strand, within CSW01_03920 at 806.156 kb on + strand, within CSW01_03920 at 806.156 kb on + strand, within CSW01_03920 at 806.156 kb on + strand, within CSW01_03920 at 806.156 kb on + strand, within CSW01_03920 at 806.156 kb on + strand, within CSW01_03920 at 806.156 kb on + strand, within CSW01_03920 at 806.156 kb on + strand, within CSW01_03920 at 806.164 kb on - strand, within CSW01_03920 at 806.164 kb on - strand, within CSW01_03920 at 806.164 kb on - strand, within CSW01_03920 at 806.164 kb on - strand, within CSW01_03920 at 806.164 kb on - strand, within CSW01_03920 at 806.175 kb on + strand, within CSW01_03920 at 806.252 kb on + strand, within CSW01_03920 at 806.252 kb on + strand, within CSW01_03920 at 806.291 kb on - strand, within CSW01_03920 at 806.336 kb on + strand, within CSW01_03920 at 806.339 kb on - strand, within CSW01_03920 at 806.459 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.590 kb on - strand at 806.633 kb on + strand at 806.654 kb on - strand at 806.752 kb on + strand at 807.056 kb on + strand, within CSW01_03925 at 807.139 kb on - strand at 807.139 kb on - strand at 807.141 kb on + strand at 807.141 kb on + strand at 807.141 kb on + strand at 807.149 kb on - strand at 807.149 kb on - strand at 807.149 kb on - strand at 807.151 kb on + strand at 807.280 kb on + strand at 807.318 kb on - strand at 807.348 kb on + strand at 807.356 kb on - strand at 807.401 kb on + strand at 807.440 kb on - strand, within CSW01_03930
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 804,407 + -0.8 804,811 + +0.8 804,840 - CSW01_03915 0.18 -0.3 804,982 - -1.6 805,066 - +0.7 805,075 + -0.9 805,084 - +0.4 805,193 - +0.2 805,262 + -1.6 805,299 + +1.5 805,299 + +0.3 805,338 - -0.0 805,367 - CSW01_03920 0.12 +1.6 805,367 - CSW01_03920 0.12 -2.4 805,408 - CSW01_03920 0.15 +0.4 805,439 + CSW01_03920 0.17 +1.1 805,453 - CSW01_03920 0.18 -1.9 805,681 - CSW01_03920 0.36 -2.4 805,702 - CSW01_03920 0.38 -0.5 805,722 - CSW01_03920 0.39 -1.3 805,787 - CSW01_03920 0.44 -0.5 805,810 + CSW01_03920 0.46 +1.2 805,831 + CSW01_03920 0.48 -2.4 805,839 - CSW01_03920 0.48 -4.0 805,839 - CSW01_03920 0.48 +0.1 805,839 - CSW01_03920 0.48 -0.2 805,839 - CSW01_03920 0.48 +0.3 805,879 + CSW01_03920 0.51 -0.5 805,884 + CSW01_03920 0.52 -1.2 805,887 - CSW01_03920 0.52 -4.0 805,887 - CSW01_03920 0.52 -2.6 805,889 + CSW01_03920 0.52 -3.4 805,891 + CSW01_03920 0.52 -1.9 805,892 - CSW01_03920 0.52 -1.0 805,932 - CSW01_03920 0.55 -0.4 805,955 - CSW01_03920 0.57 -1.0 805,955 - CSW01_03920 0.57 +0.2 805,979 - CSW01_03920 0.59 -0.3 806,076 + CSW01_03920 0.67 -0.8 806,084 - CSW01_03920 0.67 +1.2 806,122 + CSW01_03920 0.70 -0.8 806,127 + CSW01_03920 0.70 -0.3 806,130 - CSW01_03920 0.71 -2.1 806,156 + CSW01_03920 0.73 -2.3 806,156 + CSW01_03920 0.73 +1.0 806,156 + CSW01_03920 0.73 -0.8 806,156 + CSW01_03920 0.73 +1.3 806,156 + CSW01_03920 0.73 +1.2 806,156 + CSW01_03920 0.73 -2.5 806,156 + CSW01_03920 0.73 -0.2 806,164 - CSW01_03920 0.73 +0.6 806,164 - CSW01_03920 0.73 +2.5 806,164 - CSW01_03920 0.73 -0.4 806,164 - CSW01_03920 0.73 -2.7 806,164 - CSW01_03920 0.73 +0.1 806,175 + CSW01_03920 0.74 -0.1 806,252 + CSW01_03920 0.80 -2.2 806,252 + CSW01_03920 0.80 +0.1 806,291 - CSW01_03920 0.83 -0.3 806,336 + CSW01_03920 0.87 +0.5 806,339 - CSW01_03920 0.87 -0.9 806,459 + +0.9 806,550 + -0.6 806,550 + -1.8 806,550 + +1.7 806,550 + -0.0 806,590 - -1.2 806,633 + +1.1 806,654 - -2.8 806,752 + -1.2 807,056 + CSW01_03925 0.80 +1.4 807,139 - -1.4 807,139 - +0.3 807,141 + -0.2 807,141 + +0.7 807,141 + -0.8 807,149 - -0.9 807,149 - +0.6 807,149 - +1.0 807,151 + +1.5 807,280 + +0.3 807,318 - +0.2 807,348 + +1.6 807,356 - +0.6 807,401 + +0.6 807,440 - CSW01_03930 0.11 -0.0
Or see this region's nucleotide sequence