Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03710

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03705 and CSW01_03710 are separated by 517 nucleotidesCSW01_03710 and CSW01_03715 are separated by 63 nucleotidesCSW01_03715 and CSW01_03720 are separated by 280 nucleotides CSW01_03705: CSW01_03705 - chaperone protein ClpB, at 758,419 to 760,992 _03705 CSW01_03710: CSW01_03710 - 16S ribosomal RNA, at 761,510 to 763,059 _03710 CSW01_03715: CSW01_03715 - tRNA-Glu, at 763,123 to 763,198 _03715 CSW01_03720: CSW01_03720 - 23S ribosomal RNA, at 763,479 to 766,393 _03720 Position (kb) 761 762 763 764Strain fitness (log2 ratio) -2 -1 0 1 2 3at 760.653 kb on - strand, within CSW01_03705at 760.690 kb on + strand, within CSW01_03705at 760.697 kb on + strand, within CSW01_03705at 760.712 kb on + strand, within CSW01_03705at 760.742 kb on + strandat 760.750 kb on - strandat 760.750 kb on - strandat 760.770 kb on + strandat 760.856 kb on - strandat 760.937 kb on - strandat 761.196 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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760,653 - CSW01_03705 0.87 -1.0
760,690 + CSW01_03705 0.88 -1.9
760,697 + CSW01_03705 0.89 +2.2
760,712 + CSW01_03705 0.89 -0.3
760,742 + -0.0
760,750 - +2.8
760,750 - -0.7
760,770 + +1.0
760,856 - +2.7
760,937 - +1.1
761,196 + -0.0

Or see this region's nucleotide sequence