Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03425

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03415 and CSW01_03420 are separated by 86 nucleotidesCSW01_03420 and CSW01_03425 are separated by 46 nucleotidesCSW01_03425 and CSW01_03430 are separated by 52 nucleotidesCSW01_03430 and CSW01_03435 are separated by 11 nucleotides CSW01_03415: CSW01_03415 - lipoprotein NlpI, at 691,234 to 692,145 _03415 CSW01_03420: CSW01_03420 - MarR family transcriptional regulator, at 692,232 to 692,651 _03420 CSW01_03425: CSW01_03425 - MATE family efflux transporter, at 692,698 to 694,035 _03425 CSW01_03430: CSW01_03430 - U32 family peptidase, at 694,088 to 694,966 _03430 CSW01_03435: CSW01_03435 - protease, at 694,978 to 695,991 _03435 Position (kb) 692 693 694 695Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 691.830 kb on + strand, within CSW01_03415at 691.838 kb on + strand, within CSW01_03415at 691.853 kb on + strand, within CSW01_03415at 691.947 kb on + strand, within CSW01_03415at 691.955 kb on - strand, within CSW01_03415at 691.987 kb on + strand, within CSW01_03415at 692.027 kb on + strand, within CSW01_03415at 692.035 kb on - strand, within CSW01_03415at 692.073 kb on + strandat 692.115 kb on - strandat 692.118 kb on + strandat 692.395 kb on + strand, within CSW01_03420at 692.430 kb on + strand, within CSW01_03420at 692.430 kb on + strand, within CSW01_03420at 692.430 kb on + strand, within CSW01_03420at 692.430 kb on + strand, within CSW01_03420at 692.438 kb on - strand, within CSW01_03420at 692.438 kb on - strand, within CSW01_03420at 692.438 kb on - strand, within CSW01_03420at 692.457 kb on - strand, within CSW01_03420at 692.540 kb on - strand, within CSW01_03420at 692.540 kb on - strand, within CSW01_03420at 692.552 kb on + strand, within CSW01_03420at 692.635 kb on + strandat 692.648 kb on - strandat 692.763 kb on + strandat 692.770 kb on + strandat 692.771 kb on - strandat 692.771 kb on - strandat 692.844 kb on + strand, within CSW01_03425at 692.864 kb on - strand, within CSW01_03425at 692.869 kb on - strand, within CSW01_03425at 692.934 kb on - strand, within CSW01_03425at 692.953 kb on - strand, within CSW01_03425at 692.964 kb on - strand, within CSW01_03425at 692.968 kb on + strand, within CSW01_03425at 692.978 kb on - strand, within CSW01_03425at 692.993 kb on + strand, within CSW01_03425at 693.086 kb on + strand, within CSW01_03425at 693.086 kb on + strand, within CSW01_03425at 693.094 kb on - strand, within CSW01_03425at 693.119 kb on + strand, within CSW01_03425at 693.119 kb on + strand, within CSW01_03425at 693.127 kb on - strand, within CSW01_03425at 693.204 kb on + strand, within CSW01_03425at 693.250 kb on + strand, within CSW01_03425at 693.250 kb on + strand, within CSW01_03425at 693.253 kb on - strand, within CSW01_03425at 693.253 kb on - strand, within CSW01_03425at 693.258 kb on - strand, within CSW01_03425at 693.258 kb on - strand, within CSW01_03425at 693.286 kb on - strand, within CSW01_03425at 693.288 kb on + strand, within CSW01_03425at 693.288 kb on + strand, within CSW01_03425at 693.289 kb on - strand, within CSW01_03425at 693.296 kb on - strand, within CSW01_03425at 693.372 kb on - strand, within CSW01_03425at 693.453 kb on + strand, within CSW01_03425at 693.453 kb on + strand, within CSW01_03425at 693.453 kb on + strand, within CSW01_03425at 693.461 kb on - strand, within CSW01_03425at 693.461 kb on - strand, within CSW01_03425at 693.461 kb on - strand, within CSW01_03425at 693.492 kb on + strand, within CSW01_03425at 693.542 kb on + strand, within CSW01_03425at 693.562 kb on + strand, within CSW01_03425at 693.595 kb on - strand, within CSW01_03425at 693.630 kb on - strand, within CSW01_03425at 693.651 kb on + strand, within CSW01_03425at 693.689 kb on + strand, within CSW01_03425at 693.689 kb on + strand, within CSW01_03425at 693.763 kb on - strand, within CSW01_03425at 693.801 kb on + strand, within CSW01_03425at 693.849 kb on + strand, within CSW01_03425at 693.958 kb on - strandat 693.974 kb on + strandat 693.984 kb on - strandat 694.068 kb on + strandat 694.111 kb on - strandat 694.131 kb on + strandat 694.131 kb on + strandat 694.200 kb on - strand, within CSW01_03430at 694.210 kb on + strand, within CSW01_03430at 694.210 kb on + strand, within CSW01_03430at 694.218 kb on - strand, within CSW01_03430at 694.218 kb on - strand, within CSW01_03430at 694.218 kb on - strand, within CSW01_03430at 694.294 kb on - strand, within CSW01_03430at 694.345 kb on - strand, within CSW01_03430at 694.428 kb on - strand, within CSW01_03430at 694.437 kb on + strand, within CSW01_03430at 694.484 kb on - strand, within CSW01_03430at 694.484 kb on - strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.521 kb on + strand, within CSW01_03430at 694.521 kb on + strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.530 kb on + strand, within CSW01_03430at 694.591 kb on + strand, within CSW01_03430at 694.597 kb on - strand, within CSW01_03430at 694.599 kb on - strand, within CSW01_03430at 694.613 kb on - strand, within CSW01_03430at 694.622 kb on - strand, within CSW01_03430at 694.645 kb on + strand, within CSW01_03430at 694.692 kb on + strand, within CSW01_03430at 694.772 kb on - strand, within CSW01_03430at 694.818 kb on - strand, within CSW01_03430at 694.843 kb on + strand, within CSW01_03430at 694.969 kb on + strandat 695.011 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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691,830 + CSW01_03415 0.65 +1.0
691,838 + CSW01_03415 0.66 -0.4
691,853 + CSW01_03415 0.68 -1.8
691,947 + CSW01_03415 0.78 -3.0
691,955 - CSW01_03415 0.79 -1.0
691,987 + CSW01_03415 0.83 -3.6
692,027 + CSW01_03415 0.87 +0.3
692,035 - CSW01_03415 0.88 -0.7
692,073 + +1.1
692,115 - -0.1
692,118 + -0.4
692,395 + CSW01_03420 0.39 +0.4
692,430 + CSW01_03420 0.47 +1.0
692,430 + CSW01_03420 0.47 +0.3
692,430 + CSW01_03420 0.47 -2.3
692,430 + CSW01_03420 0.47 +1.4
692,438 - CSW01_03420 0.49 -0.1
692,438 - CSW01_03420 0.49 -0.7
692,438 - CSW01_03420 0.49 +0.4
692,457 - CSW01_03420 0.54 -1.3
692,540 - CSW01_03420 0.73 +0.3
692,540 - CSW01_03420 0.73 -0.3
692,552 + CSW01_03420 0.76 +0.6
692,635 + -2.2
692,648 - +1.5
692,763 + -2.8
692,770 + +1.4
692,771 - +1.2
692,771 - -0.7
692,844 + CSW01_03425 0.11 +0.7
692,864 - CSW01_03425 0.12 -2.9
692,869 - CSW01_03425 0.13 -0.3
692,934 - CSW01_03425 0.18 +0.2
692,953 - CSW01_03425 0.19 +0.8
692,964 - CSW01_03425 0.20 +0.9
692,968 + CSW01_03425 0.20 -0.6
692,978 - CSW01_03425 0.21 -2.8
692,993 + CSW01_03425 0.22 +0.7
693,086 + CSW01_03425 0.29 -2.2
693,086 + CSW01_03425 0.29 +0.9
693,094 - CSW01_03425 0.30 +0.6
693,119 + CSW01_03425 0.31 -2.4
693,119 + CSW01_03425 0.31 +0.4
693,127 - CSW01_03425 0.32 +1.6
693,204 + CSW01_03425 0.38 +0.1
693,250 + CSW01_03425 0.41 -0.2
693,250 + CSW01_03425 0.41 -2.8
693,253 - CSW01_03425 0.41 +0.8
693,253 - CSW01_03425 0.41 +1.2
693,258 - CSW01_03425 0.42 +0.8
693,258 - CSW01_03425 0.42 -2.6
693,286 - CSW01_03425 0.44 +0.7
693,288 + CSW01_03425 0.44 -2.8
693,288 + CSW01_03425 0.44 -1.8
693,289 - CSW01_03425 0.44 -1.5
693,296 - CSW01_03425 0.45 -3.0
693,372 - CSW01_03425 0.50 +0.8
693,453 + CSW01_03425 0.56 -2.0
693,453 + CSW01_03425 0.56 -3.5
693,453 + CSW01_03425 0.56 -2.2
693,461 - CSW01_03425 0.57 +0.0
693,461 - CSW01_03425 0.57 +1.8
693,461 - CSW01_03425 0.57 -1.1
693,492 + CSW01_03425 0.59 -1.1
693,542 + CSW01_03425 0.63 -0.8
693,562 + CSW01_03425 0.65 -0.9
693,595 - CSW01_03425 0.67 -0.5
693,630 - CSW01_03425 0.70 +2.8
693,651 + CSW01_03425 0.71 +1.2
693,689 + CSW01_03425 0.74 +0.5
693,689 + CSW01_03425 0.74 -1.7
693,763 - CSW01_03425 0.80 +1.1
693,801 + CSW01_03425 0.82 -2.4
693,849 + CSW01_03425 0.86 +1.7
693,958 - +0.9
693,974 + -1.5
693,984 - +1.7
694,068 + +0.0
694,111 - +0.8
694,131 + -3.7
694,131 + +1.1
694,200 - CSW01_03430 0.13 +0.7
694,210 + CSW01_03430 0.14 +0.2
694,210 + CSW01_03430 0.14 +0.8
694,218 - CSW01_03430 0.15 -0.8
694,218 - CSW01_03430 0.15 -1.0
694,218 - CSW01_03430 0.15 +0.6
694,294 - CSW01_03430 0.23 +0.7
694,345 - CSW01_03430 0.29 +1.5
694,428 - CSW01_03430 0.39 -1.4
694,437 + CSW01_03430 0.40 +0.6
694,484 - CSW01_03430 0.45 -1.8
694,484 - CSW01_03430 0.45 -0.5
694,513 + CSW01_03430 0.48 +1.8
694,513 + CSW01_03430 0.48 +2.4
694,513 + CSW01_03430 0.48 -2.1
694,513 + CSW01_03430 0.48 +1.7
694,513 + CSW01_03430 0.48 +2.6
694,513 + CSW01_03430 0.48 -2.8
694,513 + CSW01_03430 0.48 +0.1
694,513 + CSW01_03430 0.48 -2.0
694,521 + CSW01_03430 0.49 -0.8
694,521 + CSW01_03430 0.49 +0.5
694,521 - CSW01_03430 0.49 +0.6
694,521 - CSW01_03430 0.49 +0.5
694,521 - CSW01_03430 0.49 +0.0
694,521 - CSW01_03430 0.49 +0.4
694,521 - CSW01_03430 0.49 +0.9
694,521 - CSW01_03430 0.49 +0.8
694,530 + CSW01_03430 0.50 +1.0
694,591 + CSW01_03430 0.57 +1.9
694,597 - CSW01_03430 0.58 -2.2
694,599 - CSW01_03430 0.58 -3.9
694,613 - CSW01_03430 0.60 -2.7
694,622 - CSW01_03430 0.61 -3.5
694,645 + CSW01_03430 0.63 -1.3
694,692 + CSW01_03430 0.69 -0.0
694,772 - CSW01_03430 0.78 -2.2
694,818 - CSW01_03430 0.83 -0.7
694,843 + CSW01_03430 0.86 +0.8
694,969 + +2.4
695,011 + +0.8

Or see this region's nucleotide sequence