Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03315 and CSW01_03320 are separated by 67 nucleotides CSW01_03320 and CSW01_03325 are separated by 79 nucleotides
CSW01_03315: CSW01_03315 - Tyrosine--tRNA ligase 2, at 670,774 to 671,961
_03315
CSW01_03320: CSW01_03320 - serine-type D-Ala-D-Ala carboxypeptidase, at 672,029 to 673,492
_03320
CSW01_03325: CSW01_03325 - porin, at 673,572 to 674,624
_03325
Position (kb) 672
673
674 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 672.059 kb on - strand at 672.268 kb on - strand, within CSW01_03320 at 672.363 kb on - strand, within CSW01_03320 at 672.385 kb on + strand, within CSW01_03320 at 672.423 kb on - strand, within CSW01_03320 at 672.485 kb on + strand, within CSW01_03320 at 672.545 kb on + strand, within CSW01_03320 at 672.583 kb on - strand, within CSW01_03320 at 672.689 kb on - strand, within CSW01_03320 at 672.695 kb on - strand, within CSW01_03320 at 672.748 kb on - strand, within CSW01_03320 at 672.767 kb on + strand, within CSW01_03320 at 672.829 kb on + strand, within CSW01_03320 at 672.829 kb on + strand, within CSW01_03320 at 672.837 kb on - strand, within CSW01_03320 at 672.837 kb on - strand, within CSW01_03320 at 672.865 kb on + strand, within CSW01_03320 at 672.865 kb on + strand, within CSW01_03320 at 672.865 kb on + strand, within CSW01_03320 at 672.865 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.902 kb on + strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 673.010 kb on - strand, within CSW01_03320 at 673.065 kb on + strand, within CSW01_03320 at 673.068 kb on - strand, within CSW01_03320 at 673.119 kb on + strand, within CSW01_03320 at 673.132 kb on - strand, within CSW01_03320 at 673.153 kb on + strand, within CSW01_03320 at 673.153 kb on + strand, within CSW01_03320 at 673.153 kb on + strand, within CSW01_03320 at 673.153 kb on + strand, within CSW01_03320 at 673.156 kb on - strand, within CSW01_03320 at 673.156 kb on - strand, within CSW01_03320 at 673.207 kb on - strand, within CSW01_03320 at 673.272 kb on + strand, within CSW01_03320 at 673.314 kb on - strand, within CSW01_03320 at 673.380 kb on - strand at 673.566 kb on - strand at 673.663 kb on - strand at 673.777 kb on - strand, within CSW01_03325 at 673.911 kb on + strand, within CSW01_03325 at 673.919 kb on - strand, within CSW01_03325 at 673.919 kb on - strand, within CSW01_03325 at 673.926 kb on + strand, within CSW01_03325 at 674.032 kb on + strand, within CSW01_03325 at 674.061 kb on - strand, within CSW01_03325 at 674.061 kb on - strand, within CSW01_03325 at 674.164 kb on + strand, within CSW01_03325 at 674.182 kb on - strand, within CSW01_03325 at 674.198 kb on - strand, within CSW01_03325 at 674.391 kb on + strand, within CSW01_03325 at 674.399 kb on - strand, within CSW01_03325
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 672,059 - +0.8 672,268 - CSW01_03320 0.16 -1.1 672,363 - CSW01_03320 0.23 +0.2 672,385 + CSW01_03320 0.24 +0.9 672,423 - CSW01_03320 0.27 -2.6 672,485 + CSW01_03320 0.31 -0.5 672,545 + CSW01_03320 0.35 -1.1 672,583 - CSW01_03320 0.38 +1.5 672,689 - CSW01_03320 0.45 -0.4 672,695 - CSW01_03320 0.45 -3.2 672,748 - CSW01_03320 0.49 +1.3 672,767 + CSW01_03320 0.50 -0.1 672,829 + CSW01_03320 0.55 -0.7 672,829 + CSW01_03320 0.55 -1.0 672,837 - CSW01_03320 0.55 +1.8 672,837 - CSW01_03320 0.55 -0.8 672,865 + CSW01_03320 0.57 +0.1 672,865 + CSW01_03320 0.57 -0.8 672,865 + CSW01_03320 0.57 +0.5 672,865 + CSW01_03320 0.57 +0.3 672,900 + CSW01_03320 0.59 -2.4 672,900 + CSW01_03320 0.59 +1.7 672,900 + CSW01_03320 0.59 +0.1 672,900 + CSW01_03320 0.59 +0.5 672,900 + CSW01_03320 0.59 -3.5 672,900 + CSW01_03320 0.59 -4.1 672,900 + CSW01_03320 0.59 +1.0 672,902 + CSW01_03320 0.60 +0.3 672,908 - CSW01_03320 0.60 +0.2 672,908 - CSW01_03320 0.60 -4.2 672,908 - CSW01_03320 0.60 +2.9 672,908 - CSW01_03320 0.60 +0.7 672,908 - CSW01_03320 0.60 +1.0 672,908 - CSW01_03320 0.60 -0.3 672,908 - CSW01_03320 0.60 +0.1 672,908 - CSW01_03320 0.60 -0.8 673,010 - CSW01_03320 0.67 +0.7 673,065 + CSW01_03320 0.71 +1.0 673,068 - CSW01_03320 0.71 -2.7 673,119 + CSW01_03320 0.74 +0.4 673,132 - CSW01_03320 0.75 -1.8 673,153 + CSW01_03320 0.77 +1.2 673,153 + CSW01_03320 0.77 +0.3 673,153 + CSW01_03320 0.77 +1.1 673,153 + CSW01_03320 0.77 -0.6 673,156 - CSW01_03320 0.77 -1.1 673,156 - CSW01_03320 0.77 -0.1 673,207 - CSW01_03320 0.80 +0.3 673,272 + CSW01_03320 0.85 +0.3 673,314 - CSW01_03320 0.88 +1.4 673,380 - +0.1 673,566 - +1.3 673,663 - -2.1 673,777 - CSW01_03325 0.19 -0.5 673,911 + CSW01_03325 0.32 -1.8 673,919 - CSW01_03325 0.33 -2.5 673,919 - CSW01_03325 0.33 -3.0 673,926 + CSW01_03325 0.34 -2.8 674,032 + CSW01_03325 0.44 -2.3 674,061 - CSW01_03325 0.46 -1.7 674,061 - CSW01_03325 0.46 -1.5 674,164 + CSW01_03325 0.56 -3.8 674,182 - CSW01_03325 0.58 -1.0 674,198 - CSW01_03325 0.59 -2.2 674,391 + CSW01_03325 0.78 -1.7 674,399 - CSW01_03325 0.79 -2.1
Or see this region's nucleotide sequence