Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03285

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03280 and CSW01_03285 are separated by 72 nucleotidesCSW01_03285 and CSW01_03290 are separated by 253 nucleotides CSW01_03280: CSW01_03280 - 16S rRNA methyltransferase, at 660,575 to 661,597 _03280 CSW01_03285: CSW01_03285 - AI-2E family transporter, at 661,670 to 662,755 _03285 CSW01_03290: CSW01_03290 - glutamate-1-semialdehyde 2,1-aminomutase, at 663,009 to 664,307 _03290 Position (kb) 661 662 663Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 660.712 kb on + strand, within CSW01_03280at 660.790 kb on + strand, within CSW01_03280at 660.842 kb on - strand, within CSW01_03280at 660.897 kb on + strand, within CSW01_03280at 660.953 kb on + strand, within CSW01_03280at 660.953 kb on + strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 661.011 kb on + strand, within CSW01_03280at 661.012 kb on - strand, within CSW01_03280at 661.249 kb on - strand, within CSW01_03280at 661.254 kb on - strand, within CSW01_03280at 661.287 kb on + strand, within CSW01_03280at 661.287 kb on + strand, within CSW01_03280at 661.358 kb on + strand, within CSW01_03280at 661.388 kb on - strand, within CSW01_03280at 661.403 kb on - strand, within CSW01_03280at 661.430 kb on - strand, within CSW01_03280at 661.448 kb on - strand, within CSW01_03280at 661.579 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.587 kb on - strandat 661.587 kb on - strandat 661.592 kb on - strandat 661.592 kb on - strandat 661.592 kb on - strandat 661.592 kb on - strandat 661.616 kb on - strandat 661.727 kb on - strandat 661.786 kb on + strand, within CSW01_03285at 661.802 kb on - strand, within CSW01_03285at 661.831 kb on + strand, within CSW01_03285at 661.832 kb on - strand, within CSW01_03285at 661.839 kb on - strand, within CSW01_03285at 661.839 kb on - strand, within CSW01_03285at 661.841 kb on + strand, within CSW01_03285at 661.844 kb on - strand, within CSW01_03285at 661.849 kb on - strand, within CSW01_03285at 661.883 kb on - strand, within CSW01_03285at 661.961 kb on + strand, within CSW01_03285at 661.985 kb on - strand, within CSW01_03285at 662.019 kb on + strand, within CSW01_03285at 662.019 kb on + strand, within CSW01_03285at 662.066 kb on + strand, within CSW01_03285at 662.067 kb on + strand, within CSW01_03285at 662.120 kb on - strand, within CSW01_03285at 662.168 kb on + strand, within CSW01_03285at 662.171 kb on - strand, within CSW01_03285at 662.176 kb on - strand, within CSW01_03285at 662.217 kb on + strand, within CSW01_03285at 662.225 kb on - strand, within CSW01_03285at 662.225 kb on - strand, within CSW01_03285at 662.355 kb on + strand, within CSW01_03285at 662.363 kb on - strand, within CSW01_03285at 662.393 kb on + strand, within CSW01_03285at 662.393 kb on + strand, within CSW01_03285at 662.418 kb on - strand, within CSW01_03285at 662.420 kb on + strand, within CSW01_03285at 662.420 kb on + strand, within CSW01_03285at 662.454 kb on - strand, within CSW01_03285at 662.477 kb on + strand, within CSW01_03285at 662.484 kb on - strand, within CSW01_03285at 662.618 kb on + strand, within CSW01_03285at 662.633 kb on + strand, within CSW01_03285at 662.893 kb on + strandat 662.900 kb on + strandat 662.901 kb on - strandat 662.913 kb on - strandat 662.955 kb on - strandat 662.955 kb on - strandat 662.955 kb on - strandat 662.955 kb on - strandat 662.991 kb on + strandat 663.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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660,712 + CSW01_03280 0.13 +0.1
660,790 + CSW01_03280 0.21 +0.2
660,842 - CSW01_03280 0.26 +0.4
660,897 + CSW01_03280 0.31 -0.6
660,953 + CSW01_03280 0.37 -2.4
660,953 + CSW01_03280 0.37 +1.0
660,961 - CSW01_03280 0.38 -0.5
660,961 - CSW01_03280 0.38 -1.1
660,961 - CSW01_03280 0.38 -2.1
660,961 - CSW01_03280 0.38 -0.4
661,011 + CSW01_03280 0.43 -1.0
661,012 - CSW01_03280 0.43 -2.2
661,249 - CSW01_03280 0.66 +1.0
661,254 - CSW01_03280 0.66 -0.9
661,287 + CSW01_03280 0.70 -2.0
661,287 + CSW01_03280 0.70 +1.6
661,358 + CSW01_03280 0.77 +1.7
661,388 - CSW01_03280 0.79 +0.1
661,403 - CSW01_03280 0.81 -2.7
661,430 - CSW01_03280 0.84 -3.4
661,448 - CSW01_03280 0.85 -1.0
661,579 + -0.0
661,584 + +0.8
661,584 + -1.2
661,584 + +0.8
661,584 + -2.9
661,584 + -4.2
661,584 + +0.1
661,587 - -3.1
661,587 - -4.4
661,592 - -1.1
661,592 - +1.3
661,592 - -0.0
661,592 - +0.7
661,616 - +0.7
661,727 - -1.5
661,786 + CSW01_03285 0.11 +0.2
661,802 - CSW01_03285 0.12 +0.5
661,831 + CSW01_03285 0.15 +0.1
661,832 - CSW01_03285 0.15 -0.8
661,839 - CSW01_03285 0.16 +0.2
661,839 - CSW01_03285 0.16 -3.7
661,841 + CSW01_03285 0.16 +0.7
661,844 - CSW01_03285 0.16 +1.0
661,849 - CSW01_03285 0.16 +0.9
661,883 - CSW01_03285 0.20 -3.8
661,961 + CSW01_03285 0.27 +0.8
661,985 - CSW01_03285 0.29 -0.3
662,019 + CSW01_03285 0.32 +1.2
662,019 + CSW01_03285 0.32 -0.3
662,066 + CSW01_03285 0.36 +0.4
662,067 + CSW01_03285 0.37 -2.3
662,120 - CSW01_03285 0.41 -0.3
662,168 + CSW01_03285 0.46 +1.8
662,171 - CSW01_03285 0.46 -1.8
662,176 - CSW01_03285 0.47 +0.2
662,217 + CSW01_03285 0.50 +0.2
662,225 - CSW01_03285 0.51 +0.3
662,225 - CSW01_03285 0.51 +1.6
662,355 + CSW01_03285 0.63 +1.1
662,363 - CSW01_03285 0.64 +1.2
662,393 + CSW01_03285 0.67 -2.5
662,393 + CSW01_03285 0.67 -0.7
662,418 - CSW01_03285 0.69 -1.0
662,420 + CSW01_03285 0.69 +0.4
662,420 + CSW01_03285 0.69 -3.5
662,454 - CSW01_03285 0.72 +0.6
662,477 + CSW01_03285 0.74 -1.5
662,484 - CSW01_03285 0.75 -0.7
662,618 + CSW01_03285 0.87 +1.0
662,633 + CSW01_03285 0.89 -0.5
662,893 + +0.3
662,900 + +0.3
662,901 - +0.8
662,913 - -2.4
662,955 - +0.9
662,955 - +0.4
662,955 - -1.8
662,955 - -0.0
662,991 + +0.5
663,014 - +0.3

Or see this region's nucleotide sequence