Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03215

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03210 and CSW01_03215 overlap by 1 nucleotidesCSW01_03215 and CSW01_03220 are separated by 130 nucleotides CSW01_03210: CSW01_03210 - iron ABC transporter permease, at 638,771 to 640,396 _03210 CSW01_03215: CSW01_03215 - ABC transporter ATP-binding protein, at 640,396 to 641,427 _03215 CSW01_03220: CSW01_03220 - phosphonomutase, at 641,558 to 642,970 _03220 Position (kb) 640 641 642Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 639.405 kb on + strand, within CSW01_03210at 639.405 kb on + strand, within CSW01_03210at 639.405 kb on + strand, within CSW01_03210at 639.428 kb on + strand, within CSW01_03210at 639.436 kb on - strand, within CSW01_03210at 639.526 kb on + strand, within CSW01_03210at 639.526 kb on + strand, within CSW01_03210at 639.531 kb on + strand, within CSW01_03210at 639.534 kb on - strand, within CSW01_03210at 639.546 kb on - strand, within CSW01_03210at 639.593 kb on + strand, within CSW01_03210at 639.593 kb on - strand, within CSW01_03210at 639.632 kb on + strand, within CSW01_03210at 639.632 kb on + strand, within CSW01_03210at 639.640 kb on - strand, within CSW01_03210at 639.640 kb on - strand, within CSW01_03210at 639.689 kb on - strand, within CSW01_03210at 639.719 kb on - strand, within CSW01_03210at 639.721 kb on + strand, within CSW01_03210at 639.721 kb on + strand, within CSW01_03210at 639.721 kb on + strand, within CSW01_03210at 639.729 kb on - strand, within CSW01_03210at 639.729 kb on - strand, within CSW01_03210at 639.729 kb on - strand, within CSW01_03210at 639.735 kb on + strand, within CSW01_03210at 639.759 kb on + strand, within CSW01_03210at 639.765 kb on - strand, within CSW01_03210at 639.767 kb on + strand, within CSW01_03210at 639.775 kb on - strand, within CSW01_03210at 639.775 kb on - strand, within CSW01_03210at 639.785 kb on - strand, within CSW01_03210at 639.877 kb on + strand, within CSW01_03210at 639.879 kb on + strand, within CSW01_03210at 639.885 kb on - strand, within CSW01_03210at 639.885 kb on - strand, within CSW01_03210at 639.889 kb on + strand, within CSW01_03210at 639.897 kb on - strand, within CSW01_03210at 639.897 kb on - strand, within CSW01_03210at 639.981 kb on + strand, within CSW01_03210at 640.038 kb on - strand, within CSW01_03210at 640.083 kb on + strand, within CSW01_03210at 640.114 kb on + strand, within CSW01_03210at 640.141 kb on + strand, within CSW01_03210at 640.149 kb on - strand, within CSW01_03210at 640.154 kb on - strand, within CSW01_03210at 640.207 kb on - strand, within CSW01_03210at 640.257 kb on + strandat 640.277 kb on + strandat 640.279 kb on - strandat 640.290 kb on + strandat 640.298 kb on - strandat 640.355 kb on - strandat 640.393 kb on + strandat 640.401 kb on - strandat 640.411 kb on - strandat 640.411 kb on - strandat 640.575 kb on + strand, within CSW01_03215at 640.575 kb on + strand, within CSW01_03215at 640.583 kb on - strand, within CSW01_03215at 640.587 kb on + strand, within CSW01_03215at 640.595 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.630 kb on - strand, within CSW01_03215at 640.630 kb on - strand, within CSW01_03215at 640.630 kb on - strand, within CSW01_03215at 640.630 kb on - strand, within CSW01_03215at 640.788 kb on + strand, within CSW01_03215at 640.812 kb on - strand, within CSW01_03215at 640.814 kb on + strand, within CSW01_03215at 640.814 kb on - strand, within CSW01_03215at 640.828 kb on + strand, within CSW01_03215at 640.845 kb on - strand, within CSW01_03215at 640.918 kb on - strand, within CSW01_03215at 640.940 kb on + strand, within CSW01_03215at 641.062 kb on + strand, within CSW01_03215at 641.065 kb on - strand, within CSW01_03215at 641.141 kb on + strand, within CSW01_03215at 641.141 kb on + strand, within CSW01_03215at 641.149 kb on - strand, within CSW01_03215at 641.159 kb on - strand, within CSW01_03215at 641.175 kb on - strand, within CSW01_03215at 641.231 kb on + strand, within CSW01_03215at 641.231 kb on + strand, within CSW01_03215at 641.239 kb on - strand, within CSW01_03215at 641.239 kb on - strand, within CSW01_03215at 641.239 kb on - strand, within CSW01_03215at 641.257 kb on + strand, within CSW01_03215at 641.257 kb on + strand, within CSW01_03215at 641.257 kb on + strand, within CSW01_03215at 641.292 kb on + strand, within CSW01_03215at 641.292 kb on - strand, within CSW01_03215at 641.300 kb on - strand, within CSW01_03215at 641.333 kb on + strandat 641.341 kb on - strandat 641.442 kb on - strandat 641.469 kb on + strandat 641.502 kb on + strandat 641.522 kb on + strandat 641.525 kb on - strandat 641.582 kb on - strandat 641.760 kb on + strand, within CSW01_03220at 641.796 kb on + strand, within CSW01_03220at 641.823 kb on + strand, within CSW01_03220at 641.823 kb on + strand, within CSW01_03220at 641.823 kb on + strand, within CSW01_03220at 641.831 kb on - strand, within CSW01_03220at 641.831 kb on - strand, within CSW01_03220at 641.934 kb on + strand, within CSW01_03220at 641.934 kb on + strand, within CSW01_03220at 641.970 kb on - strand, within CSW01_03220at 641.983 kb on + strand, within CSW01_03220at 642.037 kb on + strand, within CSW01_03220at 642.037 kb on + strand, within CSW01_03220at 642.037 kb on + strand, within CSW01_03220at 642.045 kb on - strand, within CSW01_03220at 642.090 kb on - strand, within CSW01_03220at 642.106 kb on + strand, within CSW01_03220at 642.106 kb on + strand, within CSW01_03220at 642.114 kb on - strand, within CSW01_03220at 642.114 kb on - strand, within CSW01_03220at 642.114 kb on - strand, within CSW01_03220at 642.114 kb on - strand, within CSW01_03220at 642.116 kb on + strand, within CSW01_03220at 642.242 kb on + strand, within CSW01_03220at 642.242 kb on + strand, within CSW01_03220at 642.242 kb on + strand, within CSW01_03220at 642.250 kb on - strand, within CSW01_03220at 642.250 kb on - strand, within CSW01_03220at 642.250 kb on - strand, within CSW01_03220at 642.250 kb on - strand, within CSW01_03220at 642.250 kb on - strand, within CSW01_03220at 642.250 kb on - strand, within CSW01_03220at 642.346 kb on + strand, within CSW01_03220

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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639,405 + CSW01_03210 0.39 -2.5
639,405 + CSW01_03210 0.39 -3.0
639,405 + CSW01_03210 0.39 -3.6
639,428 + CSW01_03210 0.40 -2.6
639,436 - CSW01_03210 0.41 -5.0
639,526 + CSW01_03210 0.46 -1.7
639,526 + CSW01_03210 0.46 -0.2
639,531 + CSW01_03210 0.47 -3.7
639,534 - CSW01_03210 0.47 -1.3
639,546 - CSW01_03210 0.48 -4.0
639,593 + CSW01_03210 0.51 -4.5
639,593 - CSW01_03210 0.51 -2.0
639,632 + CSW01_03210 0.53 -3.7
639,632 + CSW01_03210 0.53 -3.8
639,640 - CSW01_03210 0.53 -2.6
639,640 - CSW01_03210 0.53 -1.3
639,689 - CSW01_03210 0.56 -2.1
639,719 - CSW01_03210 0.58 -3.6
639,721 + CSW01_03210 0.58 -1.7
639,721 + CSW01_03210 0.58 -2.6
639,721 + CSW01_03210 0.58 -0.1
639,729 - CSW01_03210 0.59 -4.8
639,729 - CSW01_03210 0.59 -6.2
639,729 - CSW01_03210 0.59 -4.9
639,735 + CSW01_03210 0.59 -3.2
639,759 + CSW01_03210 0.61 -2.7
639,765 - CSW01_03210 0.61 -4.5
639,767 + CSW01_03210 0.61 -3.4
639,775 - CSW01_03210 0.62 -5.3
639,775 - CSW01_03210 0.62 -1.3
639,785 - CSW01_03210 0.62 -4.9
639,877 + CSW01_03210 0.68 -3.9
639,879 + CSW01_03210 0.68 -4.0
639,885 - CSW01_03210 0.69 -3.5
639,885 - CSW01_03210 0.69 -2.3
639,889 + CSW01_03210 0.69 -1.5
639,897 - CSW01_03210 0.69 -5.7
639,897 - CSW01_03210 0.69 -1.5
639,981 + CSW01_03210 0.74 -4.1
640,038 - CSW01_03210 0.78 -2.5
640,083 + CSW01_03210 0.81 -1.3
640,114 + CSW01_03210 0.83 -4.0
640,141 + CSW01_03210 0.84 -3.0
640,149 - CSW01_03210 0.85 -4.5
640,154 - CSW01_03210 0.85 -2.7
640,207 - CSW01_03210 0.88 -4.3
640,257 + -1.8
640,277 + -0.7
640,279 - -1.5
640,290 + -2.2
640,298 - -3.7
640,355 - -0.1
640,393 + -0.8
640,401 - -4.3
640,411 - -3.1
640,411 - -4.8
640,575 + CSW01_03215 0.17 -1.3
640,575 + CSW01_03215 0.17 -2.4
640,583 - CSW01_03215 0.18 -3.3
640,587 + CSW01_03215 0.19 -1.0
640,595 + CSW01_03215 0.19 -2.5
640,622 + CSW01_03215 0.22 -3.7
640,622 + CSW01_03215 0.22 -1.4
640,622 + CSW01_03215 0.22 -2.8
640,622 + CSW01_03215 0.22 -2.4
640,622 + CSW01_03215 0.22 -3.3
640,622 + CSW01_03215 0.22 -5.5
640,622 + CSW01_03215 0.22 -2.8
640,622 + CSW01_03215 0.22 -2.5
640,622 + CSW01_03215 0.22 -1.3
640,622 + CSW01_03215 0.22 -6.3
640,622 + CSW01_03215 0.22 -3.2
640,630 - CSW01_03215 0.23 -4.1
640,630 - CSW01_03215 0.23 -3.9
640,630 - CSW01_03215 0.23 -3.3
640,630 - CSW01_03215 0.23 -3.1
640,788 + CSW01_03215 0.38 -2.4
640,812 - CSW01_03215 0.40 -3.2
640,814 + CSW01_03215 0.41 -2.6
640,814 - CSW01_03215 0.41 -4.7
640,828 + CSW01_03215 0.42 -4.6
640,845 - CSW01_03215 0.44 -2.4
640,918 - CSW01_03215 0.51 -4.2
640,940 + CSW01_03215 0.53 -2.1
641,062 + CSW01_03215 0.65 -5.1
641,065 - CSW01_03215 0.65 -2.6
641,141 + CSW01_03215 0.72 -2.1
641,141 + CSW01_03215 0.72 -3.0
641,149 - CSW01_03215 0.73 -1.8
641,159 - CSW01_03215 0.74 -3.0
641,175 - CSW01_03215 0.75 -2.0
641,231 + CSW01_03215 0.81 -1.6
641,231 + CSW01_03215 0.81 -3.8
641,239 - CSW01_03215 0.82 -3.0
641,239 - CSW01_03215 0.82 -3.4
641,239 - CSW01_03215 0.82 -3.0
641,257 + CSW01_03215 0.83 -1.7
641,257 + CSW01_03215 0.83 -3.5
641,257 + CSW01_03215 0.83 -1.3
641,292 + CSW01_03215 0.87 -5.7
641,292 - CSW01_03215 0.87 -1.8
641,300 - CSW01_03215 0.88 -4.8
641,333 + -2.7
641,341 - -2.0
641,442 - -3.3
641,469 + -3.2
641,502 + -0.5
641,522 + +0.3
641,525 - +0.5
641,582 - -0.6
641,760 + CSW01_03220 0.14 -0.3
641,796 + CSW01_03220 0.17 -2.5
641,823 + CSW01_03220 0.19 -3.3
641,823 + CSW01_03220 0.19 -3.8
641,823 + CSW01_03220 0.19 -4.7
641,831 - CSW01_03220 0.19 +0.4
641,831 - CSW01_03220 0.19 -2.4
641,934 + CSW01_03220 0.27 +2.0
641,934 + CSW01_03220 0.27 -1.5
641,970 - CSW01_03220 0.29 -0.8
641,983 + CSW01_03220 0.30 -1.3
642,037 + CSW01_03220 0.34 -2.0
642,037 + CSW01_03220 0.34 -0.1
642,037 + CSW01_03220 0.34 -1.8
642,045 - CSW01_03220 0.34 -2.7
642,090 - CSW01_03220 0.38 -0.8
642,106 + CSW01_03220 0.39 +0.9
642,106 + CSW01_03220 0.39 -3.5
642,114 - CSW01_03220 0.39 +0.6
642,114 - CSW01_03220 0.39 +2.0
642,114 - CSW01_03220 0.39 -2.9
642,114 - CSW01_03220 0.39 +2.0
642,116 + CSW01_03220 0.39 +0.8
642,242 + CSW01_03220 0.48 +0.9
642,242 + CSW01_03220 0.48 -1.3
642,242 + CSW01_03220 0.48 +1.8
642,250 - CSW01_03220 0.49 +0.6
642,250 - CSW01_03220 0.49 -2.8
642,250 - CSW01_03220 0.49 +1.3
642,250 - CSW01_03220 0.49 -0.9
642,250 - CSW01_03220 0.49 -0.8
642,250 - CSW01_03220 0.49 -1.4
642,346 + CSW01_03220 0.56 -3.4

Or see this region's nucleotide sequence