Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03125

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03120 and CSW01_03125 are separated by 5 nucleotidesCSW01_03125 and CSW01_03130 are separated by 63 nucleotidesCSW01_03130 and CSW01_03135 are separated by 10 nucleotides CSW01_03120: CSW01_03120 - ABC transporter ATP-binding protein, at 615,668 to 616,585 _03120 CSW01_03125: CSW01_03125 - ABC transporter permease, at 616,591 to 617,361 _03125 CSW01_03130: CSW01_03130 - pantoate--beta-alanine ligase, at 617,425 to 618,306 _03130 CSW01_03135: CSW01_03135 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 618,317 to 619,111 _03135 Position (kb) 616 617 618Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 615.658 kb on + strandat 615.675 kb on - strandat 615.738 kb on + strandat 615.740 kb on - strandat 615.772 kb on + strand, within CSW01_03120at 615.778 kb on - strand, within CSW01_03120at 615.780 kb on - strand, within CSW01_03120at 615.804 kb on + strand, within CSW01_03120at 615.829 kb on + strand, within CSW01_03120at 615.862 kb on - strand, within CSW01_03120at 616.009 kb on - strand, within CSW01_03120at 616.113 kb on + strand, within CSW01_03120at 616.185 kb on - strand, within CSW01_03120at 616.185 kb on - strand, within CSW01_03120at 616.350 kb on - strand, within CSW01_03120at 616.417 kb on + strand, within CSW01_03120at 616.500 kb on + strandat 616.544 kb on - strandat 616.561 kb on + strandat 616.746 kb on + strand, within CSW01_03125at 616.768 kb on + strand, within CSW01_03125at 616.781 kb on - strand, within CSW01_03125at 616.852 kb on - strand, within CSW01_03125at 616.896 kb on - strand, within CSW01_03125at 616.896 kb on - strand, within CSW01_03125at 616.920 kb on - strand, within CSW01_03125at 617.107 kb on + strand, within CSW01_03125at 617.133 kb on + strand, within CSW01_03125at 617.305 kb on + strandat 617.310 kb on + strandat 617.310 kb on + strandat 617.310 kb on + strandat 617.310 kb on + strandat 617.310 kb on + strandat 617.310 kb on + strandat 617.310 kb on + strandat 617.313 kb on - strandat 617.313 kb on - strandat 617.313 kb on - strandat 617.313 kb on - strandat 617.313 kb on - strandat 617.315 kb on - strandat 617.318 kb on - strandat 617.318 kb on - strandat 617.355 kb on - strandat 617.383 kb on + strandat 617.383 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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615,658 + -0.2
615,675 - +0.2
615,738 + -3.3
615,740 - -0.1
615,772 + CSW01_03120 0.11 +0.5
615,778 - CSW01_03120 0.12 +0.8
615,780 - CSW01_03120 0.12 +1.9
615,804 + CSW01_03120 0.15 -3.9
615,829 + CSW01_03120 0.18 +0.6
615,862 - CSW01_03120 0.21 +0.2
616,009 - CSW01_03120 0.37 +1.2
616,113 + CSW01_03120 0.48 -1.3
616,185 - CSW01_03120 0.56 -2.0
616,185 - CSW01_03120 0.56 -1.8
616,350 - CSW01_03120 0.74 +1.3
616,417 + CSW01_03120 0.82 -1.8
616,500 + +0.7
616,544 - -2.2
616,561 + -0.0
616,746 + CSW01_03125 0.20 +0.3
616,768 + CSW01_03125 0.23 -1.3
616,781 - CSW01_03125 0.25 +0.8
616,852 - CSW01_03125 0.34 -0.9
616,896 - CSW01_03125 0.40 +0.8
616,896 - CSW01_03125 0.40 +0.3
616,920 - CSW01_03125 0.43 -1.5
617,107 + CSW01_03125 0.67 -1.0
617,133 + CSW01_03125 0.70 +2.5
617,305 + -1.2
617,310 + -0.0
617,310 + -1.7
617,310 + +0.8
617,310 + -2.0
617,310 + +0.9
617,310 + +1.1
617,310 + +0.6
617,313 - +0.2
617,313 - +0.9
617,313 - -1.7
617,313 - +0.7
617,313 - -2.8
617,315 - -2.3
617,318 - -1.4
617,318 - +0.8
617,355 - -1.1
617,383 + -2.4
617,383 + +0.4

Or see this region's nucleotide sequence