Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03105

Experiment: ICP3_phage_4.1_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03095 and CSW01_03100 are separated by 55 nucleotidesCSW01_03100 and CSW01_03105 are separated by 295 nucleotidesCSW01_03105 and CSW01_03110 are separated by 74 nucleotidesCSW01_03110 and CSW01_03115 are separated by 147 nucleotides CSW01_03095: CSW01_03095 - hypothetical protein, at 611,066 to 611,251 _03095 CSW01_03100: CSW01_03100 - TetR/AcrR family transcriptional regulator, at 611,307 to 611,918 _03100 CSW01_03105: CSW01_03105 - hypoxanthine phosphoribosyltransferase, at 612,214 to 612,747 _03105 CSW01_03110: CSW01_03110 - carbonate dehydratase, at 612,822 to 613,490 _03110 CSW01_03115: CSW01_03115 - SulP family inorganic anion transporter, at 613,638 to 615,284 _03115 Position (kb) 612 613Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 611.280 kb on + strandat 611.287 kb on + strandat 611.292 kb on + strandat 611.295 kb on - strandat 611.337 kb on - strandat 611.352 kb on + strandat 611.352 kb on + strandat 611.352 kb on + strandat 611.352 kb on + strandat 611.352 kb on + strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.390 kb on - strand, within CSW01_03100at 611.401 kb on + strand, within CSW01_03100at 611.417 kb on + strand, within CSW01_03100at 611.561 kb on - strand, within CSW01_03100at 611.580 kb on - strand, within CSW01_03100at 611.587 kb on - strand, within CSW01_03100at 611.685 kb on + strand, within CSW01_03100at 611.692 kb on - strand, within CSW01_03100at 611.732 kb on + strand, within CSW01_03100at 611.751 kb on + strand, within CSW01_03100at 611.922 kb on + strandat 611.930 kb on - strandat 611.930 kb on - strandat 611.930 kb on - strandat 611.930 kb on - strandat 612.012 kb on - strandat 612.012 kb on - strandat 612.085 kb on + strandat 612.085 kb on + strandat 612.099 kb on + strandat 612.099 kb on + strandat 612.163 kb on - strandat 612.167 kb on + strandat 612.193 kb on + strandat 612.212 kb on + strandat 612.282 kb on + strand, within CSW01_03105at 612.410 kb on + strand, within CSW01_03105at 612.420 kb on + strand, within CSW01_03105at 612.437 kb on + strand, within CSW01_03105at 612.448 kb on - strand, within CSW01_03105at 612.477 kb on + strand, within CSW01_03105at 612.566 kb on + strand, within CSW01_03105at 612.575 kb on - strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.600 kb on - strand, within CSW01_03105at 612.610 kb on - strand, within CSW01_03105at 612.711 kb on + strandat 612.726 kb on + strandat 612.727 kb on + strandat 612.793 kb on - strandat 612.795 kb on + strandat 612.803 kb on - strandat 612.803 kb on - strandat 612.810 kb on - strandat 612.869 kb on - strandat 612.892 kb on + strand, within CSW01_03110at 612.900 kb on - strand, within CSW01_03110at 612.907 kb on - strand, within CSW01_03110at 612.917 kb on - strand, within CSW01_03110at 612.946 kb on - strand, within CSW01_03110at 612.947 kb on - strand, within CSW01_03110at 612.994 kb on - strand, within CSW01_03110at 613.012 kb on - strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.068 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.111 kb on - strand, within CSW01_03110at 613.111 kb on - strand, within CSW01_03110at 613.263 kb on + strand, within CSW01_03110at 613.271 kb on - strand, within CSW01_03110at 613.323 kb on + strand, within CSW01_03110at 613.442 kb on + strandat 613.442 kb on + strandat 613.459 kb on - strandat 613.570 kb on + strandat 613.622 kb on + strandat 613.682 kb on + strandat 613.690 kb on - strandat 613.716 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
remove
611,280 + +1.6
611,287 + +0.4
611,292 + -0.0
611,295 - -4.3
611,337 - -1.7
611,352 + -3.3
611,352 + -0.6
611,352 + -0.9
611,352 + +0.1
611,352 + +0.3
611,360 - -1.4
611,360 - -1.2
611,360 - -0.9
611,360 - -2.4
611,360 - -0.7
611,360 - -2.4
611,390 - CSW01_03100 0.14 -0.2
611,401 + CSW01_03100 0.15 -2.1
611,417 + CSW01_03100 0.18 -0.0
611,561 - CSW01_03100 0.42 -0.3
611,580 - CSW01_03100 0.45 -3.9
611,587 - CSW01_03100 0.46 +0.9
611,685 + CSW01_03100 0.62 -1.2
611,692 - CSW01_03100 0.63 -3.0
611,732 + CSW01_03100 0.69 -0.9
611,751 + CSW01_03100 0.73 -4.7
611,922 + +0.0
611,930 - -1.2
611,930 - +0.2
611,930 - -0.6
611,930 - -1.9
612,012 - +0.3
612,012 - -1.0
612,085 + -2.0
612,085 + -2.9
612,099 + -0.1
612,099 + -0.2
612,163 - +0.6
612,167 + +0.0
612,193 + -1.7
612,212 + +1.1
612,282 + CSW01_03105 0.13 -2.1
612,410 + CSW01_03105 0.37 +1.2
612,420 + CSW01_03105 0.39 -1.9
612,437 + CSW01_03105 0.42 +1.2
612,448 - CSW01_03105 0.44 +0.9
612,477 + CSW01_03105 0.49 +0.8
612,566 + CSW01_03105 0.66 +2.0
612,575 - CSW01_03105 0.68 +0.5
612,592 + CSW01_03105 0.71 -0.4
612,592 + CSW01_03105 0.71 -0.4
612,592 + CSW01_03105 0.71 +1.4
612,592 + CSW01_03105 0.71 -0.0
612,592 + CSW01_03105 0.71 +1.2
612,600 - CSW01_03105 0.72 +0.4
612,610 - CSW01_03105 0.74 -0.3
612,711 + -1.1
612,726 + +0.1
612,727 + -1.7
612,793 - -0.2
612,795 + +1.7
612,803 - -1.8
612,803 - -0.3
612,810 - -1.5
612,869 - -0.5
612,892 + CSW01_03110 0.10 +0.1
612,900 - CSW01_03110 0.12 +0.3
612,907 - CSW01_03110 0.13 +0.6
612,917 - CSW01_03110 0.14 +1.5
612,946 - CSW01_03110 0.19 +1.0
612,947 - CSW01_03110 0.19 -0.1
612,994 - CSW01_03110 0.26 -3.5
613,012 - CSW01_03110 0.28 -0.7
613,020 + CSW01_03110 0.30 +1.5
613,020 + CSW01_03110 0.30 +0.3
613,020 + CSW01_03110 0.30 -0.9
613,020 + CSW01_03110 0.30 +1.3
613,028 - CSW01_03110 0.31 +1.9
613,028 - CSW01_03110 0.31 +0.3
613,028 - CSW01_03110 0.31 -1.0
613,028 - CSW01_03110 0.31 +0.9
613,068 + CSW01_03110 0.37 +0.7
613,103 + CSW01_03110 0.42 -0.1
613,103 + CSW01_03110 0.42 -1.0
613,103 + CSW01_03110 0.42 +0.9
613,103 + CSW01_03110 0.42 +0.9
613,111 - CSW01_03110 0.43 +0.6
613,111 - CSW01_03110 0.43 +0.2
613,263 + CSW01_03110 0.66 +0.2
613,271 - CSW01_03110 0.67 +0.7
613,323 + CSW01_03110 0.75 -3.4
613,442 + -0.2
613,442 + -0.4
613,459 - -2.5
613,570 + -2.3
613,622 + +1.0
613,682 + -3.5
613,690 - -0.2
613,716 + +0.0

Or see this region's nucleotide sequence