Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02755

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02750 and CSW01_02755 are separated by 89 nucleotidesCSW01_02755 and CSW01_02760 are separated by 29 nucleotidesCSW01_02760 and CSW01_02765 are separated by 240 nucleotides CSW01_02750: CSW01_02750 - DNA primase, at 551,122 to 552,885 _02750 CSW01_02755: CSW01_02755 - glutamyl-tRNA amidotransferase, at 552,975 to 553,418 _02755 CSW01_02760: CSW01_02760 - 30S ribosomal protein S21, at 553,448 to 553,663 _02760 CSW01_02765: CSW01_02765 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 553,904 to 554,923 _02765 Position (kb) 552 553 554Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 552.919 kb on - strandat 552.981 kb on - strandat 553.059 kb on - strand, within CSW01_02755at 553.149 kb on - strand, within CSW01_02755at 553.155 kb on - strand, within CSW01_02755at 553.231 kb on - strand, within CSW01_02755at 553.814 kb on + strandat 553.829 kb on + strandat 553.849 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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552,919 - +2.3
552,981 - -1.5
553,059 - CSW01_02755 0.19 -2.6
553,149 - CSW01_02755 0.39 -3.0
553,155 - CSW01_02755 0.41 -0.2
553,231 - CSW01_02755 0.58 -1.5
553,814 + +1.7
553,829 + -2.0
553,849 + -0.8

Or see this region's nucleotide sequence