Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02530

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02525 and CSW01_02530 are separated by 151 nucleotidesCSW01_02530 and CSW01_02535 are separated by 148 nucleotides CSW01_02525: CSW01_02525 - iron-regulated outer membrane virulence protein, at 503,542 to 505,500 _02525 CSW01_02530: CSW01_02530 - D-erythrose-4-phosphate dehydrogenase, at 505,652 to 506,677 _02530 CSW01_02535: CSW01_02535 - phosphoglycerate kinase, at 506,826 to 507,989 _02535 Position (kb) 505 506 507Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 504.721 kb on + strand, within CSW01_02525at 504.731 kb on + strand, within CSW01_02525at 504.736 kb on + strand, within CSW01_02525at 504.740 kb on + strand, within CSW01_02525at 504.771 kb on - strand, within CSW01_02525at 504.783 kb on - strand, within CSW01_02525at 504.787 kb on - strand, within CSW01_02525at 504.843 kb on + strand, within CSW01_02525at 504.869 kb on - strand, within CSW01_02525at 504.879 kb on + strand, within CSW01_02525at 504.887 kb on - strand, within CSW01_02525at 504.900 kb on - strand, within CSW01_02525at 504.929 kb on - strand, within CSW01_02525at 504.929 kb on - strand, within CSW01_02525at 504.931 kb on + strand, within CSW01_02525at 504.937 kb on + strand, within CSW01_02525at 505.099 kb on + strand, within CSW01_02525at 505.099 kb on + strand, within CSW01_02525at 505.124 kb on + strand, within CSW01_02525at 505.160 kb on - strand, within CSW01_02525at 505.160 kb on - strand, within CSW01_02525at 505.213 kb on + strand, within CSW01_02525at 505.262 kb on - strand, within CSW01_02525at 505.262 kb on - strand, within CSW01_02525at 505.339 kb on + strandat 505.360 kb on + strandat 505.368 kb on - strandat 505.392 kb on + strandat 505.392 kb on + strandat 505.400 kb on - strandat 505.400 kb on - strandat 505.400 kb on - strandat 505.400 kb on - strandat 505.400 kb on - strandat 505.400 kb on - strandat 505.413 kb on - strandat 505.413 kb on - strandat 505.413 kb on - strandat 505.441 kb on + strandat 505.441 kb on + strandat 505.441 kb on + strandat 505.441 kb on + strandat 505.441 kb on + strandat 505.441 kb on + strandat 505.441 kb on + strandat 505.441 kb on + strandat 505.441 kb on + strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.449 kb on - strandat 505.480 kb on + strandat 505.517 kb on - strandat 505.518 kb on - strandat 505.518 kb on - strandat 505.518 kb on - strandat 505.581 kb on + strandat 505.605 kb on - strandat 505.612 kb on - strandat 505.652 kb on + strandat 505.659 kb on + strandat 505.659 kb on + strandat 505.688 kb on - strandat 505.709 kb on + strandat 505.709 kb on + strandat 505.709 kb on + strandat 505.719 kb on - strandat 505.770 kb on - strand, within CSW01_02530at 505.849 kb on + strand, within CSW01_02530at 505.957 kb on - strand, within CSW01_02530at 505.959 kb on + strand, within CSW01_02530at 505.959 kb on + strand, within CSW01_02530at 505.962 kb on - strand, within CSW01_02530at 505.964 kb on + strand, within CSW01_02530at 505.967 kb on - strand, within CSW01_02530at 505.972 kb on - strand, within CSW01_02530at 505.975 kb on - strand, within CSW01_02530at 505.997 kb on - strand, within CSW01_02530at 506.089 kb on + strand, within CSW01_02530at 506.097 kb on - strand, within CSW01_02530at 506.101 kb on + strand, within CSW01_02530at 506.139 kb on + strand, within CSW01_02530at 506.159 kb on + strand, within CSW01_02530at 506.167 kb on - strand, within CSW01_02530at 506.399 kb on + strand, within CSW01_02530at 506.483 kb on - strand, within CSW01_02530at 506.491 kb on + strand, within CSW01_02530at 506.507 kb on + strand, within CSW01_02530at 506.534 kb on + strand, within CSW01_02530at 506.534 kb on + strand, within CSW01_02530at 506.602 kb on + strandat 506.602 kb on + strandat 506.665 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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504,721 + CSW01_02525 0.60 -0.1
504,731 + CSW01_02525 0.61 -1.3
504,736 + CSW01_02525 0.61 -4.1
504,740 + CSW01_02525 0.61 +3.8
504,771 - CSW01_02525 0.63 -1.0
504,783 - CSW01_02525 0.63 -0.6
504,787 - CSW01_02525 0.64 -1.2
504,843 + CSW01_02525 0.66 -0.0
504,869 - CSW01_02525 0.68 -1.1
504,879 + CSW01_02525 0.68 -0.6
504,887 - CSW01_02525 0.69 +0.1
504,900 - CSW01_02525 0.69 +1.0
504,929 - CSW01_02525 0.71 +0.0
504,929 - CSW01_02525 0.71 +1.3
504,931 + CSW01_02525 0.71 -0.0
504,937 + CSW01_02525 0.71 -3.8
505,099 + CSW01_02525 0.79 +0.0
505,099 + CSW01_02525 0.79 +0.2
505,124 + CSW01_02525 0.81 +0.9
505,160 - CSW01_02525 0.83 -1.0
505,160 - CSW01_02525 0.83 +0.4
505,213 + CSW01_02525 0.85 -2.9
505,262 - CSW01_02525 0.88 +0.4
505,262 - CSW01_02525 0.88 +0.2
505,339 + -2.0
505,360 + -0.2
505,368 - -4.0
505,392 + -3.3
505,392 + -1.6
505,400 - +1.3
505,400 - +0.9
505,400 - -0.9
505,400 - +0.1
505,400 - +0.9
505,400 - -0.4
505,413 - +0.9
505,413 - -1.3
505,413 - -1.1
505,441 + -0.8
505,441 + -1.0
505,441 + +1.3
505,441 + -3.3
505,441 + +1.1
505,441 + -0.7
505,441 + -2.9
505,441 + +0.4
505,441 + +0.4
505,449 - -2.6
505,449 - +1.1
505,449 - -4.9
505,449 - +0.4
505,449 - +1.9
505,449 - -0.4
505,449 - +2.2
505,449 - +0.0
505,449 - -0.2
505,449 - -2.9
505,449 - -0.1
505,449 - -1.7
505,449 - -2.4
505,449 - +3.6
505,449 - -1.7
505,449 - -3.7
505,449 - -2.1
505,449 - +0.4
505,449 - -3.9
505,449 - -3.3
505,480 + -0.0
505,517 - -4.2
505,518 - +1.1
505,518 - -0.9
505,518 - +0.1
505,581 + -4.5
505,605 - -1.0
505,612 - +0.1
505,652 + -0.0
505,659 + -0.4
505,659 + -2.8
505,688 - -1.4
505,709 + -3.0
505,709 + -3.8
505,709 + -2.9
505,719 - +0.9
505,770 - CSW01_02530 0.12 -3.1
505,849 + CSW01_02530 0.19 -2.4
505,957 - CSW01_02530 0.30 -5.2
505,959 + CSW01_02530 0.30 -2.1
505,959 + CSW01_02530 0.30 +0.4
505,962 - CSW01_02530 0.30 -2.1
505,964 + CSW01_02530 0.30 -0.9
505,967 - CSW01_02530 0.31 -0.3
505,972 - CSW01_02530 0.31 -1.2
505,975 - CSW01_02530 0.31 -4.9
505,997 - CSW01_02530 0.34 -0.8
506,089 + CSW01_02530 0.43 -0.9
506,097 - CSW01_02530 0.43 -0.9
506,101 + CSW01_02530 0.44 -2.0
506,139 + CSW01_02530 0.47 -2.4
506,159 + CSW01_02530 0.49 +0.5
506,167 - CSW01_02530 0.50 -1.1
506,399 + CSW01_02530 0.73 -3.2
506,483 - CSW01_02530 0.81 -0.6
506,491 + CSW01_02530 0.82 -1.1
506,507 + CSW01_02530 0.83 -2.9
506,534 + CSW01_02530 0.86 -1.1
506,534 + CSW01_02530 0.86 -1.6
506,602 + -3.9
506,602 + -2.0
506,665 + +2.4

Or see this region's nucleotide sequence