Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02235

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02230 and CSW01_02235 are separated by 146 nucleotidesCSW01_02235 and CSW01_02240 are separated by 68 nucleotidesCSW01_02240 and CSW01_02245 are separated by 150 nucleotides CSW01_02230: CSW01_02230 - ribonuclease E inhibitor RraB, at 453,631 to 454,053 _02230 CSW01_02235: CSW01_02235 - hypothetical protein, at 454,200 to 454,997 _02235 CSW01_02240: CSW01_02240 - DUF2061 domain-containing protein, at 455,066 to 455,449 _02240 CSW01_02245: CSW01_02245 - universal stress protein, at 455,600 to 456,037 _02245 Position (kb) 454 455Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 453.284 kb on + strandat 453.284 kb on + strandat 453.284 kb on + strandat 453.284 kb on + strandat 453.284 kb on + strandat 453.292 kb on - strandat 453.292 kb on - strandat 453.292 kb on - strandat 453.349 kb on - strandat 453.358 kb on + strandat 453.366 kb on - strandat 453.453 kb on - strandat 453.453 kb on - strandat 453.467 kb on - strandat 453.507 kb on + strandat 453.531 kb on - strandat 453.542 kb on - strandat 453.627 kb on + strandat 453.635 kb on - strandat 453.635 kb on - strandat 453.635 kb on - strandat 453.635 kb on - strandat 453.703 kb on + strand, within CSW01_02230at 453.711 kb on - strand, within CSW01_02230at 453.714 kb on + strand, within CSW01_02230at 453.878 kb on + strand, within CSW01_02230at 453.878 kb on + strand, within CSW01_02230at 453.886 kb on - strand, within CSW01_02230at 453.886 kb on - strand, within CSW01_02230at 453.886 kb on - strand, within CSW01_02230at 453.986 kb on - strand, within CSW01_02230at 454.008 kb on - strand, within CSW01_02230at 454.035 kb on - strandat 454.056 kb on - strandat 454.163 kb on + strandat 454.171 kb on - strandat 454.171 kb on - strandat 454.205 kb on - strandat 454.274 kb on - strandat 454.309 kb on - strand, within CSW01_02235at 454.357 kb on + strand, within CSW01_02235at 454.357 kb on + strand, within CSW01_02235at 454.357 kb on + strand, within CSW01_02235at 454.357 kb on + strand, within CSW01_02235at 454.365 kb on - strand, within CSW01_02235at 454.365 kb on - strand, within CSW01_02235at 454.365 kb on - strand, within CSW01_02235at 454.365 kb on - strand, within CSW01_02235at 454.439 kb on - strand, within CSW01_02235at 454.457 kb on + strand, within CSW01_02235at 454.526 kb on - strand, within CSW01_02235at 454.573 kb on + strand, within CSW01_02235at 454.606 kb on + strand, within CSW01_02235at 454.614 kb on - strand, within CSW01_02235at 454.621 kb on + strand, within CSW01_02235at 454.629 kb on - strand, within CSW01_02235at 454.629 kb on - strand, within CSW01_02235at 454.652 kb on + strand, within CSW01_02235at 454.699 kb on - strand, within CSW01_02235at 454.699 kb on - strand, within CSW01_02235at 454.767 kb on + strand, within CSW01_02235at 454.937 kb on + strandat 454.937 kb on + strandat 454.937 kb on + strandat 454.937 kb on + strandat 454.945 kb on - strandat 454.945 kb on - strandat 454.945 kb on - strandat 454.945 kb on - strandat 454.964 kb on - strandat 454.964 kb on - strandat 454.975 kb on + strandat 455.063 kb on + strandat 455.078 kb on + strandat 455.084 kb on - strandat 455.147 kb on + strand, within CSW01_02240at 455.276 kb on + strand, within CSW01_02240at 455.284 kb on - strand, within CSW01_02240at 455.284 kb on - strand, within CSW01_02240at 455.328 kb on + strand, within CSW01_02240at 455.335 kb on + strand, within CSW01_02240at 455.335 kb on + strand, within CSW01_02240at 455.335 kb on + strand, within CSW01_02240at 455.335 kb on + strand, within CSW01_02240at 455.343 kb on - strand, within CSW01_02240at 455.343 kb on - strand, within CSW01_02240at 455.386 kb on + strand, within CSW01_02240at 455.425 kb on - strandat 455.459 kb on - strandat 455.603 kb on + strandat 455.603 kb on + strandat 455.667 kb on - strand, within CSW01_02245at 455.693 kb on + strand, within CSW01_02245at 455.749 kb on + strand, within CSW01_02245at 455.789 kb on + strand, within CSW01_02245at 455.834 kb on - strand, within CSW01_02245at 455.993 kb on + strand, within CSW01_02245

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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453,284 + -0.8
453,284 + +0.4
453,284 + +1.3
453,284 + +0.4
453,284 + +0.4
453,292 - +1.2
453,292 - +1.1
453,292 - -0.2
453,349 - +0.9
453,358 + -0.4
453,366 - +0.1
453,453 - +1.6
453,453 - -0.5
453,467 - -3.2
453,507 + -1.8
453,531 - -0.1
453,542 - +0.4
453,627 + -1.6
453,635 - +0.6
453,635 - -3.7
453,635 - -2.6
453,635 - +1.1
453,703 + CSW01_02230 0.17 -1.3
453,711 - CSW01_02230 0.19 -1.0
453,714 + CSW01_02230 0.20 -0.4
453,878 + CSW01_02230 0.58 +1.3
453,878 + CSW01_02230 0.58 -0.6
453,886 - CSW01_02230 0.60 -2.0
453,886 - CSW01_02230 0.60 -2.7
453,886 - CSW01_02230 0.60 +0.6
453,986 - CSW01_02230 0.84 +0.8
454,008 - CSW01_02230 0.89 +0.8
454,035 - +0.4
454,056 - -0.7
454,163 + -2.3
454,171 - +2.0
454,171 - -1.0
454,205 - +0.9
454,274 - -3.4
454,309 - CSW01_02235 0.14 +2.1
454,357 + CSW01_02235 0.20 +0.7
454,357 + CSW01_02235 0.20 -0.6
454,357 + CSW01_02235 0.20 +0.0
454,357 + CSW01_02235 0.20 -0.7
454,365 - CSW01_02235 0.21 -2.2
454,365 - CSW01_02235 0.21 +0.3
454,365 - CSW01_02235 0.21 -0.2
454,365 - CSW01_02235 0.21 -0.2
454,439 - CSW01_02235 0.30 -4.2
454,457 + CSW01_02235 0.32 +0.8
454,526 - CSW01_02235 0.41 +0.3
454,573 + CSW01_02235 0.47 +1.1
454,606 + CSW01_02235 0.51 +0.7
454,614 - CSW01_02235 0.52 +0.7
454,621 + CSW01_02235 0.53 +0.6
454,629 - CSW01_02235 0.54 +0.9
454,629 - CSW01_02235 0.54 -3.1
454,652 + CSW01_02235 0.57 -2.3
454,699 - CSW01_02235 0.63 +2.0
454,699 - CSW01_02235 0.63 +0.9
454,767 + CSW01_02235 0.71 -1.6
454,937 + -0.1
454,937 + -0.8
454,937 + -3.3
454,937 + +0.1
454,945 - +1.4
454,945 - +0.0
454,945 - +0.2
454,945 - -2.1
454,964 - -3.8
454,964 - +0.6
454,975 + -0.9
455,063 + -0.1
455,078 + +0.8
455,084 - +0.3
455,147 + CSW01_02240 0.21 -0.3
455,276 + CSW01_02240 0.55 +0.4
455,284 - CSW01_02240 0.57 +0.2
455,284 - CSW01_02240 0.57 -0.6
455,328 + CSW01_02240 0.68 +0.7
455,335 + CSW01_02240 0.70 +2.4
455,335 + CSW01_02240 0.70 +0.3
455,335 + CSW01_02240 0.70 -0.8
455,335 + CSW01_02240 0.70 +0.3
455,343 - CSW01_02240 0.72 -0.9
455,343 - CSW01_02240 0.72 -1.9
455,386 + CSW01_02240 0.83 -1.2
455,425 - +1.5
455,459 - +0.2
455,603 + +0.4
455,603 + -2.2
455,667 - CSW01_02245 0.15 +0.9
455,693 + CSW01_02245 0.21 -0.1
455,749 + CSW01_02245 0.34 +0.3
455,789 + CSW01_02245 0.43 -2.2
455,834 - CSW01_02245 0.53 +1.4
455,993 + CSW01_02245 0.90 -4.4

Or see this region's nucleotide sequence