Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02215

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02210 and CSW01_02215 are separated by 8 nucleotidesCSW01_02215 and CSW01_02220 overlap by 1 nucleotides CSW01_02210: CSW01_02210 - DUF3971 domain-containing protein, at 445,429 to 449,304 _02210 CSW01_02215: CSW01_02215 - carbon-nitrogen hydrolase family protein, at 449,313 to 450,140 _02215 CSW01_02220: CSW01_02220 - metalloprotease TldD, at 450,140 to 451,585 _02220 Position (kb) 449 450 451Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 448.318 kb on - strand, within CSW01_02210at 448.331 kb on + strand, within CSW01_02210at 448.368 kb on + strand, within CSW01_02210at 448.368 kb on + strand, within CSW01_02210at 448.465 kb on + strand, within CSW01_02210at 448.474 kb on - strand, within CSW01_02210at 448.552 kb on - strand, within CSW01_02210at 448.573 kb on - strand, within CSW01_02210at 448.708 kb on + strand, within CSW01_02210at 448.709 kb on - strand, within CSW01_02210at 448.776 kb on + strand, within CSW01_02210at 448.776 kb on + strand, within CSW01_02210at 448.776 kb on + strand, within CSW01_02210at 448.784 kb on - strand, within CSW01_02210at 448.791 kb on + strand, within CSW01_02210at 448.826 kb on + strand, within CSW01_02210at 448.871 kb on - strand, within CSW01_02210at 448.962 kb on - strandat 449.068 kb on - strandat 449.156 kb on + strandat 449.174 kb on - strandat 449.320 kb on + strandat 449.320 kb on + strandat 449.390 kb on + strandat 449.395 kb on + strandat 449.502 kb on + strand, within CSW01_02215at 449.510 kb on - strand, within CSW01_02215at 449.510 kb on - strand, within CSW01_02215at 449.510 kb on - strand, within CSW01_02215at 449.510 kb on - strand, within CSW01_02215at 449.546 kb on - strand, within CSW01_02215at 449.586 kb on - strand, within CSW01_02215at 449.598 kb on + strand, within CSW01_02215at 449.609 kb on - strand, within CSW01_02215at 449.609 kb on - strand, within CSW01_02215at 449.611 kb on - strand, within CSW01_02215at 449.646 kb on + strand, within CSW01_02215at 449.662 kb on - strand, within CSW01_02215at 449.678 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.712 kb on - strand, within CSW01_02215at 449.712 kb on - strand, within CSW01_02215at 449.712 kb on - strand, within CSW01_02215at 449.721 kb on + strand, within CSW01_02215at 449.724 kb on - strand, within CSW01_02215at 449.734 kb on + strand, within CSW01_02215at 449.734 kb on + strand, within CSW01_02215at 449.734 kb on + strand, within CSW01_02215at 449.734 kb on + strand, within CSW01_02215at 449.742 kb on - strand, within CSW01_02215at 449.742 kb on - strand, within CSW01_02215at 449.744 kb on + strand, within CSW01_02215at 449.770 kb on + strand, within CSW01_02215at 449.802 kb on + strand, within CSW01_02215at 449.802 kb on + strand, within CSW01_02215at 449.802 kb on + strand, within CSW01_02215at 449.810 kb on + strand, within CSW01_02215at 449.810 kb on - strand, within CSW01_02215at 449.833 kb on - strand, within CSW01_02215at 449.862 kb on + strand, within CSW01_02215at 449.862 kb on + strand, within CSW01_02215at 449.862 kb on + strand, within CSW01_02215at 449.888 kb on - strand, within CSW01_02215at 449.907 kb on + strand, within CSW01_02215at 450.035 kb on - strand, within CSW01_02215at 450.096 kb on - strandat 450.147 kb on - strandat 450.172 kb on - strandat 450.196 kb on + strandat 450.199 kb on - strandat 450.199 kb on - strandat 450.204 kb on - strandat 450.222 kb on - strandat 450.402 kb on + strand, within CSW01_02220at 450.402 kb on + strand, within CSW01_02220at 450.402 kb on + strand, within CSW01_02220at 450.402 kb on + strand, within CSW01_02220at 450.402 kb on + strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.420 kb on - strand, within CSW01_02220at 450.446 kb on + strand, within CSW01_02220at 450.469 kb on - strand, within CSW01_02220at 450.469 kb on - strand, within CSW01_02220at 450.493 kb on + strand, within CSW01_02220at 450.594 kb on + strand, within CSW01_02220at 450.621 kb on - strand, within CSW01_02220at 450.666 kb on - strand, within CSW01_02220at 450.668 kb on + strand, within CSW01_02220at 450.858 kb on - strand, within CSW01_02220at 450.936 kb on - strand, within CSW01_02220at 451.018 kb on + strand, within CSW01_02220at 451.026 kb on - strand, within CSW01_02220at 451.042 kb on + strand, within CSW01_02220at 451.062 kb on + strand, within CSW01_02220at 451.064 kb on + strand, within CSW01_02220at 451.099 kb on - strand, within CSW01_02220at 451.130 kb on + strand, within CSW01_02220at 451.138 kb on - strand, within CSW01_02220

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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448,318 - CSW01_02210 0.75 +0.0
448,331 + CSW01_02210 0.75 +1.0
448,368 + CSW01_02210 0.76 -0.7
448,368 + CSW01_02210 0.76 -0.6
448,465 + CSW01_02210 0.78 +0.2
448,474 - CSW01_02210 0.79 -3.1
448,552 - CSW01_02210 0.81 +0.5
448,573 - CSW01_02210 0.81 -2.7
448,708 + CSW01_02210 0.85 -3.5
448,709 - CSW01_02210 0.85 +0.5
448,776 + CSW01_02210 0.86 -0.3
448,776 + CSW01_02210 0.86 -1.6
448,776 + CSW01_02210 0.86 -2.6
448,784 - CSW01_02210 0.87 +2.2
448,791 + CSW01_02210 0.87 -0.6
448,826 + CSW01_02210 0.88 +0.2
448,871 - CSW01_02210 0.89 +2.7
448,962 - +1.2
449,068 - -2.4
449,156 + -3.5
449,174 - -2.6
449,320 + +1.2
449,320 + -2.9
449,390 + -0.1
449,395 + +1.6
449,502 + CSW01_02215 0.23 -0.2
449,510 - CSW01_02215 0.24 +1.3
449,510 - CSW01_02215 0.24 -0.3
449,510 - CSW01_02215 0.24 -1.8
449,510 - CSW01_02215 0.24 -1.1
449,546 - CSW01_02215 0.28 +0.2
449,586 - CSW01_02215 0.33 -1.8
449,598 + CSW01_02215 0.34 -1.4
449,609 - CSW01_02215 0.36 +1.6
449,609 - CSW01_02215 0.36 -0.8
449,611 - CSW01_02215 0.36 +0.8
449,646 + CSW01_02215 0.40 -0.3
449,662 - CSW01_02215 0.42 +0.1
449,678 + CSW01_02215 0.44 -0.2
449,704 + CSW01_02215 0.47 +1.0
449,704 + CSW01_02215 0.47 +0.5
449,704 + CSW01_02215 0.47 +0.3
449,704 + CSW01_02215 0.47 -2.9
449,704 + CSW01_02215 0.47 +0.6
449,704 + CSW01_02215 0.47 -1.1
449,712 - CSW01_02215 0.48 -3.6
449,712 - CSW01_02215 0.48 -1.8
449,712 - CSW01_02215 0.48 +0.8
449,721 + CSW01_02215 0.49 +0.4
449,724 - CSW01_02215 0.50 -2.5
449,734 + CSW01_02215 0.51 +0.0
449,734 + CSW01_02215 0.51 +0.4
449,734 + CSW01_02215 0.51 +1.6
449,734 + CSW01_02215 0.51 -2.5
449,742 - CSW01_02215 0.52 +1.2
449,742 - CSW01_02215 0.52 -2.8
449,744 + CSW01_02215 0.52 +2.1
449,770 + CSW01_02215 0.55 -0.1
449,802 + CSW01_02215 0.59 -1.8
449,802 + CSW01_02215 0.59 -3.6
449,802 + CSW01_02215 0.59 +0.1
449,810 + CSW01_02215 0.60 -0.1
449,810 - CSW01_02215 0.60 -1.8
449,833 - CSW01_02215 0.63 +0.1
449,862 + CSW01_02215 0.66 -2.0
449,862 + CSW01_02215 0.66 +1.2
449,862 + CSW01_02215 0.66 +1.0
449,888 - CSW01_02215 0.69 -1.5
449,907 + CSW01_02215 0.72 -0.9
450,035 - CSW01_02215 0.87 +0.4
450,096 - +1.3
450,147 - -1.6
450,172 - +0.2
450,196 + -0.8
450,199 - +0.2
450,199 - -0.5
450,204 - -0.0
450,222 - -1.6
450,402 + CSW01_02220 0.18 +1.0
450,402 + CSW01_02220 0.18 -1.1
450,402 + CSW01_02220 0.18 -3.4
450,402 + CSW01_02220 0.18 +1.3
450,402 + CSW01_02220 0.18 +0.9
450,410 - CSW01_02220 0.19 -0.3
450,410 - CSW01_02220 0.19 -1.1
450,410 - CSW01_02220 0.19 +0.5
450,410 - CSW01_02220 0.19 +0.4
450,410 - CSW01_02220 0.19 -1.2
450,410 - CSW01_02220 0.19 -0.4
450,410 - CSW01_02220 0.19 +0.6
450,410 - CSW01_02220 0.19 -0.6
450,410 - CSW01_02220 0.19 -0.0
450,420 - CSW01_02220 0.19 -4.9
450,446 + CSW01_02220 0.21 +0.6
450,469 - CSW01_02220 0.23 +0.4
450,469 - CSW01_02220 0.23 +0.6
450,493 + CSW01_02220 0.24 +0.1
450,594 + CSW01_02220 0.31 -2.2
450,621 - CSW01_02220 0.33 -1.5
450,666 - CSW01_02220 0.36 -0.2
450,668 + CSW01_02220 0.37 +0.3
450,858 - CSW01_02220 0.50 +0.2
450,936 - CSW01_02220 0.55 -1.2
451,018 + CSW01_02220 0.61 -2.4
451,026 - CSW01_02220 0.61 -1.6
451,042 + CSW01_02220 0.62 -0.1
451,062 + CSW01_02220 0.64 -2.2
451,064 + CSW01_02220 0.64 +1.3
451,099 - CSW01_02220 0.66 -2.6
451,130 + CSW01_02220 0.68 -0.8
451,138 - CSW01_02220 0.69 +0.1

Or see this region's nucleotide sequence