Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01870 and CSW01_01875 are separated by 198 nucleotides CSW01_01875 and CSW01_01880 overlap by 4 nucleotides CSW01_01880 and CSW01_01885 overlap by 4 nucleotides CSW01_01885 and CSW01_01890 are separated by 9 nucleotides
CSW01_01870: CSW01_01870 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA, at 374,331 to 375,110
_01870
CSW01_01875: CSW01_01875 - hypothetical protein, at 375,309 to 376,031
_01875
CSW01_01880: CSW01_01880 - sulfurtransferase TusD, at 376,028 to 376,423
_01880
CSW01_01885: CSW01_01885 - sulfurtransferase TusC, at 376,420 to 376,776
_01885
CSW01_01890: CSW01_01890 - sulfurtransferase complex subunit TusB, at 376,786 to 377,061
_01890
Position (kb) 375
376
377 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 374.459 kb on + strand, within CSW01_01870 at 374.459 kb on + strand, within CSW01_01870 at 374.467 kb on - strand, within CSW01_01870 at 374.584 kb on + strand, within CSW01_01870 at 374.584 kb on + strand, within CSW01_01870 at 374.592 kb on - strand, within CSW01_01870 at 374.594 kb on + strand, within CSW01_01870 at 374.625 kb on + strand, within CSW01_01870 at 374.633 kb on - strand, within CSW01_01870 at 374.681 kb on + strand, within CSW01_01870 at 374.760 kb on - strand, within CSW01_01870 at 374.792 kb on + strand, within CSW01_01870 at 374.801 kb on - strand, within CSW01_01870 at 374.808 kb on - strand, within CSW01_01870 at 374.826 kb on + strand, within CSW01_01870 at 374.836 kb on - strand, within CSW01_01870 at 374.864 kb on + strand, within CSW01_01870 at 374.895 kb on - strand, within CSW01_01870 at 374.907 kb on + strand, within CSW01_01870 at 374.915 kb on - strand, within CSW01_01870 at 374.952 kb on - strand, within CSW01_01870 at 374.974 kb on + strand, within CSW01_01870 at 375.008 kb on + strand, within CSW01_01870 at 375.008 kb on + strand, within CSW01_01870 at 375.008 kb on + strand, within CSW01_01870 at 375.008 kb on + strand, within CSW01_01870 at 375.008 kb on + strand, within CSW01_01870 at 375.016 kb on - strand, within CSW01_01870 at 375.016 kb on - strand, within CSW01_01870 at 375.016 kb on - strand, within CSW01_01870 at 375.016 kb on - strand, within CSW01_01870 at 375.016 kb on - strand, within CSW01_01870 at 375.016 kb on - strand, within CSW01_01870 at 375.139 kb on + strand at 375.166 kb on - strand at 375.167 kb on - strand at 375.177 kb on - strand at 375.297 kb on + strand at 375.307 kb on + strand at 375.472 kb on + strand, within CSW01_01875 at 375.472 kb on + strand, within CSW01_01875 at 375.655 kb on + strand, within CSW01_01875 at 375.690 kb on + strand, within CSW01_01875 at 375.690 kb on + strand, within CSW01_01875 at 375.690 kb on + strand, within CSW01_01875 at 375.970 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 374,459 + CSW01_01870 0.16 -2.7 374,459 + CSW01_01870 0.16 +2.1 374,467 - CSW01_01870 0.17 +0.0 374,584 + CSW01_01870 0.32 -0.0 374,584 + CSW01_01870 0.32 -1.1 374,592 - CSW01_01870 0.33 +0.5 374,594 + CSW01_01870 0.34 +2.2 374,625 + CSW01_01870 0.38 -4.0 374,633 - CSW01_01870 0.39 +0.4 374,681 + CSW01_01870 0.45 -3.9 374,760 - CSW01_01870 0.55 +1.0 374,792 + CSW01_01870 0.59 +0.5 374,801 - CSW01_01870 0.60 -0.2 374,808 - CSW01_01870 0.61 +1.4 374,826 + CSW01_01870 0.63 -1.3 374,836 - CSW01_01870 0.65 -1.2 374,864 + CSW01_01870 0.68 -2.8 374,895 - CSW01_01870 0.72 +0.4 374,907 + CSW01_01870 0.74 -2.8 374,915 - CSW01_01870 0.75 +1.1 374,952 - CSW01_01870 0.80 -1.6 374,974 + CSW01_01870 0.82 -0.7 375,008 + CSW01_01870 0.87 -0.2 375,008 + CSW01_01870 0.87 -0.3 375,008 + CSW01_01870 0.87 -0.8 375,008 + CSW01_01870 0.87 -0.1 375,008 + CSW01_01870 0.87 +1.4 375,016 - CSW01_01870 0.88 +0.7 375,016 - CSW01_01870 0.88 -3.4 375,016 - CSW01_01870 0.88 +1.4 375,016 - CSW01_01870 0.88 +0.3 375,016 - CSW01_01870 0.88 -0.6 375,016 - CSW01_01870 0.88 +0.9 375,139 + +0.0 375,166 - +1.1 375,167 - -0.5 375,177 - +1.1 375,297 + +0.6 375,307 + -2.7 375,472 + CSW01_01875 0.23 -2.4 375,472 + CSW01_01875 0.23 -1.3 375,655 + CSW01_01875 0.48 -0.3 375,690 + CSW01_01875 0.53 -4.2 375,690 + CSW01_01875 0.53 -3.9 375,690 + CSW01_01875 0.53 -2.6 375,970 + -3.8
Or see this region's nucleotide sequence