Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01555

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01550 and CSW01_01555 are separated by 7 nucleotidesCSW01_01555 and CSW01_01560 are separated by 111 nucleotidesCSW01_01560 and CSW01_01565 are separated by 197 nucleotides CSW01_01550: CSW01_01550 - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 313,583 to 315,076 _01550 CSW01_01555: CSW01_01555 - ATP-dependent RNA helicase RhlB, at 315,084 to 316,400 _01555 CSW01_01560: CSW01_01560 - thioredoxin TrxA, at 316,512 to 316,838 _01560 CSW01_01565: CSW01_01565 - transcription termination factor Rho, at 317,036 to 318,295 _01565 Position (kb) 315 316 317Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 314.117 kb on + strand, within CSW01_01550at 314.117 kb on + strand, within CSW01_01550at 314.117 kb on + strand, within CSW01_01550at 314.117 kb on + strand, within CSW01_01550at 314.117 kb on + strand, within CSW01_01550at 314.125 kb on - strand, within CSW01_01550at 314.125 kb on - strand, within CSW01_01550at 314.136 kb on - strand, within CSW01_01550at 314.165 kb on + strand, within CSW01_01550at 314.165 kb on + strand, within CSW01_01550at 314.165 kb on + strand, within CSW01_01550at 314.173 kb on - strand, within CSW01_01550at 314.190 kb on + strand, within CSW01_01550at 314.191 kb on - strand, within CSW01_01550at 314.205 kb on + strand, within CSW01_01550at 314.296 kb on + strand, within CSW01_01550at 314.304 kb on - strand, within CSW01_01550at 314.361 kb on - strand, within CSW01_01550at 314.372 kb on - strand, within CSW01_01550at 314.390 kb on - strand, within CSW01_01550at 314.436 kb on - strand, within CSW01_01550at 314.440 kb on + strand, within CSW01_01550at 314.452 kb on + strand, within CSW01_01550at 314.460 kb on - strand, within CSW01_01550at 314.472 kb on - strand, within CSW01_01550at 314.479 kb on - strand, within CSW01_01550at 314.597 kb on + strand, within CSW01_01550at 314.597 kb on + strand, within CSW01_01550at 314.597 kb on + strand, within CSW01_01550at 314.597 kb on + strand, within CSW01_01550at 314.597 kb on + strand, within CSW01_01550at 314.605 kb on - strand, within CSW01_01550at 314.605 kb on - strand, within CSW01_01550at 314.605 kb on - strand, within CSW01_01550at 314.675 kb on + strand, within CSW01_01550at 314.675 kb on + strand, within CSW01_01550at 314.675 kb on + strand, within CSW01_01550at 314.675 kb on + strand, within CSW01_01550at 314.682 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.685 kb on + strand, within CSW01_01550at 314.685 kb on + strand, within CSW01_01550at 314.685 kb on + strand, within CSW01_01550at 314.693 kb on - strand, within CSW01_01550at 314.711 kb on - strand, within CSW01_01550at 314.812 kb on + strand, within CSW01_01550at 314.812 kb on + strand, within CSW01_01550at 314.812 kb on + strand, within CSW01_01550at 314.812 kb on + strand, within CSW01_01550at 314.812 kb on + strand, within CSW01_01550at 314.820 kb on - strand, within CSW01_01550at 314.883 kb on - strand, within CSW01_01550at 314.912 kb on + strand, within CSW01_01550at 314.913 kb on - strand, within CSW01_01550at 314.913 kb on - strand, within CSW01_01550at 314.913 kb on - strand, within CSW01_01550at 314.913 kb on - strand, within CSW01_01550at 314.920 kb on - strand, within CSW01_01550at 314.924 kb on + strand, within CSW01_01550at 314.929 kb on + strandat 314.929 kb on + strandat 314.929 kb on + strandat 314.929 kb on + strandat 314.959 kb on - strandat 315.013 kb on + strandat 315.014 kb on - strandat 315.045 kb on + strandat 315.055 kb on - strandat 315.123 kb on + strandat 315.183 kb on + strandat 315.183 kb on + strandat 315.191 kb on - strandat 315.191 kb on - strandat 315.204 kb on - strandat 315.231 kb on + strand, within CSW01_01555at 315.236 kb on + strand, within CSW01_01555at 315.246 kb on - strand, within CSW01_01555at 315.259 kb on - strand, within CSW01_01555at 315.373 kb on - strand, within CSW01_01555at 315.382 kb on - strand, within CSW01_01555at 315.460 kb on - strand, within CSW01_01555at 315.535 kb on + strand, within CSW01_01555at 315.538 kb on + strand, within CSW01_01555at 315.585 kb on + strand, within CSW01_01555at 315.588 kb on - strand, within CSW01_01555at 315.588 kb on - strand, within CSW01_01555at 315.642 kb on - strand, within CSW01_01555at 315.655 kb on + strand, within CSW01_01555at 315.655 kb on + strand, within CSW01_01555at 315.688 kb on + strand, within CSW01_01555at 315.688 kb on + strand, within CSW01_01555at 315.688 kb on + strand, within CSW01_01555at 315.696 kb on - strand, within CSW01_01555at 315.696 kb on - strand, within CSW01_01555at 315.696 kb on - strand, within CSW01_01555at 315.733 kb on + strand, within CSW01_01555at 315.741 kb on - strand, within CSW01_01555at 315.741 kb on - strand, within CSW01_01555at 315.741 kb on - strand, within CSW01_01555at 315.741 kb on - strand, within CSW01_01555at 315.757 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.792 kb on + strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.800 kb on + strand, within CSW01_01555at 315.805 kb on + strand, within CSW01_01555at 315.805 kb on + strand, within CSW01_01555at 315.805 kb on + strand, within CSW01_01555at 315.919 kb on + strand, within CSW01_01555at 315.919 kb on + strand, within CSW01_01555at 315.927 kb on - strand, within CSW01_01555at 315.927 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.064 kb on + strand, within CSW01_01555at 316.064 kb on + strand, within CSW01_01555at 316.072 kb on - strand, within CSW01_01555at 316.172 kb on - strand, within CSW01_01555at 316.172 kb on - strand, within CSW01_01555at 316.172 kb on - strand, within CSW01_01555at 316.245 kb on - strand, within CSW01_01555at 316.247 kb on + strand, within CSW01_01555at 316.255 kb on - strand, within CSW01_01555at 316.257 kb on + strand, within CSW01_01555at 316.265 kb on - strand, within CSW01_01555at 316.267 kb on - strand, within CSW01_01555at 316.269 kb on + strandat 316.274 kb on + strandat 316.296 kb on + strandat 316.377 kb on - strandat 316.379 kb on - strandat 316.379 kb on - strandat 316.379 kb on - strandat 316.475 kb on + strandat 316.475 kb on + strandat 316.483 kb on - strandat 316.610 kb on - strand, within CSW01_01560at 316.832 kb on + strandat 316.840 kb on - strandat 316.840 kb on - strandat 316.840 kb on - strandat 316.855 kb on + strandat 316.855 kb on + strandat 316.856 kb on - strandat 316.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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314,117 + CSW01_01550 0.36 +3.1
314,117 + CSW01_01550 0.36 -1.5
314,117 + CSW01_01550 0.36 -0.3
314,117 + CSW01_01550 0.36 +0.9
314,117 + CSW01_01550 0.36 -2.6
314,125 - CSW01_01550 0.36 +2.1
314,125 - CSW01_01550 0.36 -0.6
314,136 - CSW01_01550 0.37 +0.3
314,165 + CSW01_01550 0.39 +0.5
314,165 + CSW01_01550 0.39 -0.3
314,165 + CSW01_01550 0.39 +1.6
314,173 - CSW01_01550 0.39 -2.8
314,190 + CSW01_01550 0.41 -4.0
314,191 - CSW01_01550 0.41 +1.2
314,205 + CSW01_01550 0.42 -0.1
314,296 + CSW01_01550 0.48 -2.0
314,304 - CSW01_01550 0.48 +1.6
314,361 - CSW01_01550 0.52 +0.9
314,372 - CSW01_01550 0.53 -1.5
314,390 - CSW01_01550 0.54 -0.2
314,436 - CSW01_01550 0.57 +2.2
314,440 + CSW01_01550 0.57 -0.5
314,452 + CSW01_01550 0.58 -3.4
314,460 - CSW01_01550 0.59 +1.1
314,472 - CSW01_01550 0.60 -0.3
314,479 - CSW01_01550 0.60 +0.8
314,597 + CSW01_01550 0.68 -2.8
314,597 + CSW01_01550 0.68 -0.8
314,597 + CSW01_01550 0.68 -1.5
314,597 + CSW01_01550 0.68 +0.2
314,597 + CSW01_01550 0.68 -0.4
314,605 - CSW01_01550 0.68 -1.4
314,605 - CSW01_01550 0.68 -1.3
314,605 - CSW01_01550 0.68 -0.0
314,675 + CSW01_01550 0.73 +0.9
314,675 + CSW01_01550 0.73 -0.7
314,675 + CSW01_01550 0.73 +0.6
314,675 + CSW01_01550 0.73 +1.0
314,682 - CSW01_01550 0.74 -0.4
314,683 - CSW01_01550 0.74 +0.2
314,683 - CSW01_01550 0.74 -0.8
314,683 - CSW01_01550 0.74 +0.4
314,683 - CSW01_01550 0.74 -1.4
314,683 - CSW01_01550 0.74 -1.5
314,683 - CSW01_01550 0.74 +1.1
314,683 - CSW01_01550 0.74 -0.5
314,683 - CSW01_01550 0.74 -0.2
314,685 + CSW01_01550 0.74 -4.5
314,685 + CSW01_01550 0.74 -3.5
314,685 + CSW01_01550 0.74 -0.4
314,693 - CSW01_01550 0.74 -3.4
314,711 - CSW01_01550 0.76 +0.7
314,812 + CSW01_01550 0.82 -2.1
314,812 + CSW01_01550 0.82 +1.9
314,812 + CSW01_01550 0.82 -0.5
314,812 + CSW01_01550 0.82 +1.3
314,812 + CSW01_01550 0.82 +0.7
314,820 - CSW01_01550 0.83 -2.0
314,883 - CSW01_01550 0.87 +0.3
314,912 + CSW01_01550 0.89 -0.7
314,913 - CSW01_01550 0.89 +0.2
314,913 - CSW01_01550 0.89 +0.1
314,913 - CSW01_01550 0.89 +0.5
314,913 - CSW01_01550 0.89 -1.1
314,920 - CSW01_01550 0.89 +2.1
314,924 + CSW01_01550 0.90 -0.4
314,929 + -1.0
314,929 + -1.1
314,929 + +1.3
314,929 + -0.1
314,959 - -3.4
315,013 + -3.0
315,014 - -2.9
315,045 + -3.2
315,055 - -0.2
315,123 + -1.1
315,183 + -2.0
315,183 + -0.3
315,191 - +0.3
315,191 - -4.8
315,204 - -2.6
315,231 + CSW01_01555 0.11 -2.5
315,236 + CSW01_01555 0.12 -0.6
315,246 - CSW01_01555 0.12 -0.4
315,259 - CSW01_01555 0.13 -3.2
315,373 - CSW01_01555 0.22 -0.3
315,382 - CSW01_01555 0.23 -4.3
315,460 - CSW01_01555 0.29 -4.6
315,535 + CSW01_01555 0.34 -3.8
315,538 + CSW01_01555 0.34 -3.6
315,585 + CSW01_01555 0.38 -2.1
315,588 - CSW01_01555 0.38 +0.1
315,588 - CSW01_01555 0.38 -0.5
315,642 - CSW01_01555 0.42 -2.7
315,655 + CSW01_01555 0.43 +0.1
315,655 + CSW01_01555 0.43 +0.6
315,688 + CSW01_01555 0.46 -3.4
315,688 + CSW01_01555 0.46 -3.0
315,688 + CSW01_01555 0.46 +0.4
315,696 - CSW01_01555 0.46 +0.3
315,696 - CSW01_01555 0.46 -2.3
315,696 - CSW01_01555 0.46 -3.4
315,733 + CSW01_01555 0.49 -0.1
315,741 - CSW01_01555 0.50 +0.5
315,741 - CSW01_01555 0.50 +1.9
315,741 - CSW01_01555 0.50 +0.1
315,741 - CSW01_01555 0.50 -0.4
315,757 + CSW01_01555 0.51 -0.4
315,790 + CSW01_01555 0.54 -1.3
315,790 + CSW01_01555 0.54 -1.6
315,790 + CSW01_01555 0.54 -3.7
315,790 + CSW01_01555 0.54 -1.6
315,790 + CSW01_01555 0.54 -1.8
315,790 + CSW01_01555 0.54 -1.1
315,790 + CSW01_01555 0.54 -2.1
315,792 + CSW01_01555 0.54 -2.5
315,798 - CSW01_01555 0.54 -0.2
315,798 - CSW01_01555 0.54 +0.7
315,798 - CSW01_01555 0.54 -0.8
315,798 - CSW01_01555 0.54 -0.9
315,798 - CSW01_01555 0.54 -1.3
315,798 - CSW01_01555 0.54 -3.1
315,798 - CSW01_01555 0.54 -2.2
315,798 - CSW01_01555 0.54 -1.3
315,798 - CSW01_01555 0.54 -2.3
315,798 - CSW01_01555 0.54 -0.8
315,798 - CSW01_01555 0.54 -1.5
315,800 + CSW01_01555 0.54 +1.6
315,805 + CSW01_01555 0.55 -3.2
315,805 + CSW01_01555 0.55 -3.8
315,805 + CSW01_01555 0.55 +0.1
315,919 + CSW01_01555 0.63 -1.0
315,919 + CSW01_01555 0.63 +1.1
315,927 - CSW01_01555 0.64 -3.1
315,927 - CSW01_01555 0.64 -0.4
316,055 - CSW01_01555 0.74 +1.2
316,055 - CSW01_01555 0.74 -3.6
316,055 - CSW01_01555 0.74 -0.3
316,055 - CSW01_01555 0.74 -2.6
316,064 + CSW01_01555 0.74 +0.9
316,064 + CSW01_01555 0.74 -1.0
316,072 - CSW01_01555 0.75 -3.8
316,172 - CSW01_01555 0.83 -1.8
316,172 - CSW01_01555 0.83 -0.5
316,172 - CSW01_01555 0.83 -2.1
316,245 - CSW01_01555 0.88 -3.7
316,247 + CSW01_01555 0.88 -1.1
316,255 - CSW01_01555 0.89 -0.8
316,257 + CSW01_01555 0.89 -0.4
316,265 - CSW01_01555 0.90 -2.4
316,267 - CSW01_01555 0.90 -2.8
316,269 + -2.1
316,274 + -3.5
316,296 + -4.3
316,377 - -3.2
316,379 - -0.0
316,379 - +0.2
316,379 - -2.1
316,475 + -4.4
316,475 + +0.3
316,483 - +0.2
316,610 - CSW01_01560 0.30 -1.3
316,832 + -0.2
316,840 - -0.3
316,840 - -1.5
316,840 - +0.8
316,855 + -2.1
316,855 + +0.9
316,856 - +0.5
316,952 + -0.1

Or see this region's nucleotide sequence