Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01325

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01320 and CSW01_01325 are separated by 69 nucleotidesCSW01_01325 and CSW01_01330 are separated by 99 nucleotidesCSW01_01330 and CSW01_01335 are separated by 147 nucleotides CSW01_01320: CSW01_01320 - acyl-CoA reductase, at 257,293 to 259,770 _01320 CSW01_01325: CSW01_01325 - acetyltransferase, at 259,840 to 260,406 _01325 CSW01_01330: CSW01_01330 - oxidoreductase, at 260,506 to 260,646 _01330 CSW01_01335: CSW01_01335 - ISAs1 family transposase, at 260,794 to 261,921 _01335 Position (kb) 259 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 258.855 kb on + strand, within CSW01_01320at 258.959 kb on - strand, within CSW01_01320at 258.977 kb on - strand, within CSW01_01320at 259.064 kb on + strand, within CSW01_01320at 259.064 kb on + strand, within CSW01_01320at 259.064 kb on + strand, within CSW01_01320at 259.064 kb on + strand, within CSW01_01320at 259.064 kb on + strand, within CSW01_01320at 259.072 kb on - strand, within CSW01_01320at 259.072 kb on - strand, within CSW01_01320at 259.074 kb on + strand, within CSW01_01320at 259.089 kb on - strand, within CSW01_01320at 259.157 kb on + strand, within CSW01_01320at 259.192 kb on + strand, within CSW01_01320at 259.192 kb on + strand, within CSW01_01320at 259.192 kb on + strand, within CSW01_01320at 259.192 kb on + strand, within CSW01_01320at 259.192 kb on + strand, within CSW01_01320at 259.200 kb on - strand, within CSW01_01320at 259.200 kb on - strand, within CSW01_01320at 259.316 kb on + strand, within CSW01_01320at 259.324 kb on - strand, within CSW01_01320at 259.326 kb on - strand, within CSW01_01320at 259.353 kb on + strand, within CSW01_01320at 259.361 kb on - strand, within CSW01_01320at 259.361 kb on - strand, within CSW01_01320at 259.371 kb on - strand, within CSW01_01320at 259.384 kb on + strand, within CSW01_01320at 259.384 kb on + strand, within CSW01_01320at 259.390 kb on + strand, within CSW01_01320at 259.467 kb on - strand, within CSW01_01320at 259.475 kb on + strand, within CSW01_01320at 259.480 kb on + strand, within CSW01_01320at 259.480 kb on + strand, within CSW01_01320at 259.488 kb on - strand, within CSW01_01320at 259.488 kb on - strand, within CSW01_01320at 259.572 kb on - strandat 259.582 kb on - strandat 259.658 kb on - strandat 259.658 kb on - strandat 259.658 kb on - strandat 259.670 kb on + strandat 259.670 kb on + strandat 259.723 kb on - strandat 259.736 kb on - strandat 259.736 kb on - strandat 259.751 kb on + strandat 259.763 kb on - strandat 259.771 kb on + strandat 259.772 kb on - strandat 259.870 kb on - strandat 259.926 kb on + strand, within CSW01_01325at 259.968 kb on + strand, within CSW01_01325at 260.037 kb on - strand, within CSW01_01325at 260.045 kb on - strand, within CSW01_01325at 260.450 kb on - strandat 260.623 kb on + strand, within CSW01_01330at 260.629 kb on + strand, within CSW01_01330at 260.662 kb on - strandat 260.702 kb on + strandat 260.765 kb on - strandat 260.868 kb on - strandat 260.897 kb on + strandat 260.922 kb on - strand, within CSW01_01335at 260.985 kb on + strand, within CSW01_01335at 260.985 kb on + strand, within CSW01_01335at 260.985 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.094 kb on - strand, within CSW01_01335at 261.094 kb on - strand, within CSW01_01335at 261.148 kb on - strand, within CSW01_01335at 261.151 kb on - strand, within CSW01_01335at 261.196 kb on - strand, within CSW01_01335at 261.286 kb on + strand, within CSW01_01335at 261.286 kb on + strand, within CSW01_01335at 261.294 kb on - strand, within CSW01_01335at 261.393 kb on + strand, within CSW01_01335

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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258,855 + CSW01_01320 0.63 +5.3
258,959 - CSW01_01320 0.67 +5.1
258,977 - CSW01_01320 0.68 +5.4
259,064 + CSW01_01320 0.71 +4.9
259,064 + CSW01_01320 0.71 +4.6
259,064 + CSW01_01320 0.71 +4.5
259,064 + CSW01_01320 0.71 +5.2
259,064 + CSW01_01320 0.71 +5.3
259,072 - CSW01_01320 0.72 +4.7
259,072 - CSW01_01320 0.72 +4.6
259,074 + CSW01_01320 0.72 +4.5
259,089 - CSW01_01320 0.72 +5.0
259,157 + CSW01_01320 0.75 +5.2
259,192 + CSW01_01320 0.77 +5.3
259,192 + CSW01_01320 0.77 +5.2
259,192 + CSW01_01320 0.77 +6.4
259,192 + CSW01_01320 0.77 +5.1
259,192 + CSW01_01320 0.77 +5.0
259,200 - CSW01_01320 0.77 +4.8
259,200 - CSW01_01320 0.77 +4.8
259,316 + CSW01_01320 0.82 +5.0
259,324 - CSW01_01320 0.82 +4.5
259,326 - CSW01_01320 0.82 +5.1
259,353 + CSW01_01320 0.83 +4.8
259,361 - CSW01_01320 0.83 +4.8
259,361 - CSW01_01320 0.83 +4.7
259,371 - CSW01_01320 0.84 +5.2
259,384 + CSW01_01320 0.84 +5.1
259,384 + CSW01_01320 0.84 +4.3
259,390 + CSW01_01320 0.85 +5.1
259,467 - CSW01_01320 0.88 +4.6
259,475 + CSW01_01320 0.88 +5.1
259,480 + CSW01_01320 0.88 +5.1
259,480 + CSW01_01320 0.88 +5.4
259,488 - CSW01_01320 0.89 +5.3
259,488 - CSW01_01320 0.89 +5.2
259,572 - +5.5
259,582 - +4.8
259,658 - +5.3
259,658 - +3.8
259,658 - +5.7
259,670 + +5.0
259,670 + +5.1
259,723 - +5.3
259,736 - +5.0
259,736 - +4.2
259,751 + +5.2
259,763 - +5.1
259,771 + +1.2
259,772 - +4.7
259,870 - +5.1
259,926 + CSW01_01325 0.15 +5.3
259,968 + CSW01_01325 0.23 +5.1
260,037 - CSW01_01325 0.35 +5.4
260,045 - CSW01_01325 0.36 +4.9
260,450 - +0.9
260,623 + CSW01_01330 0.83 +0.1
260,629 + CSW01_01330 0.87 -0.8
260,662 - -0.2
260,702 + -1.0
260,765 - +0.8
260,868 - +1.2
260,897 + +0.5
260,922 - CSW01_01335 0.11 +0.2
260,985 + CSW01_01335 0.17 -1.8
260,985 + CSW01_01335 0.17 -0.8
260,985 + CSW01_01335 0.17 +1.9
261,086 + CSW01_01335 0.26 +0.4
261,086 + CSW01_01335 0.26 -1.5
261,086 + CSW01_01335 0.26 -3.5
261,086 + CSW01_01335 0.26 +0.1
261,086 + CSW01_01335 0.26 +0.4
261,094 - CSW01_01335 0.27 +0.4
261,094 - CSW01_01335 0.27 -2.7
261,148 - CSW01_01335 0.31 +1.1
261,151 - CSW01_01335 0.32 -3.1
261,196 - CSW01_01335 0.36 -2.5
261,286 + CSW01_01335 0.44 -1.4
261,286 + CSW01_01335 0.44 +0.2
261,294 - CSW01_01335 0.44 +1.2
261,393 + CSW01_01335 0.53 +0.2

Or see this region's nucleotide sequence