Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01240

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01230 and CSW01_01235 overlap by 40 nucleotidesCSW01_01235 and CSW01_01240 overlap by 4 nucleotidesCSW01_01240 and CSW01_01245 overlap by 4 nucleotides CSW01_01230: CSW01_01230 - 3-deoxy-D-manno-octulosonic acid transferase, at 237,290 to 238,609 _01230 CSW01_01235: CSW01_01235 - glycosyl transferase, at 238,570 to 239,358 _01235 CSW01_01240: CSW01_01240 - lipopolysaccharide biosynthesis protein, at 239,355 to 240,404 _01240 CSW01_01245: CSW01_01245 - lipopolysaccharide heptosyltransferase II, at 240,401 to 241,441 _01245 Position (kb) 239 240 241Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 238.592 kb on + strandat 238.652 kb on + strand, within CSW01_01235at 238.655 kb on - strand, within CSW01_01235at 238.670 kb on - strand, within CSW01_01235at 238.701 kb on - strand, within CSW01_01235at 238.717 kb on - strand, within CSW01_01235at 238.752 kb on - strand, within CSW01_01235at 238.754 kb on - strand, within CSW01_01235at 238.771 kb on - strand, within CSW01_01235at 238.794 kb on + strand, within CSW01_01235at 238.794 kb on + strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.807 kb on - strand, within CSW01_01235at 238.812 kb on - strand, within CSW01_01235at 238.825 kb on - strand, within CSW01_01235at 238.846 kb on - strand, within CSW01_01235at 238.892 kb on - strand, within CSW01_01235at 238.962 kb on - strand, within CSW01_01235at 238.989 kb on - strand, within CSW01_01235at 239.102 kb on - strand, within CSW01_01235at 239.138 kb on - strand, within CSW01_01235at 239.148 kb on - strand, within CSW01_01235at 239.284 kb on - strandat 239.378 kb on - strandat 239.429 kb on + strandat 239.466 kb on + strand, within CSW01_01240at 239.473 kb on + strand, within CSW01_01240at 239.474 kb on - strand, within CSW01_01240at 239.474 kb on - strand, within CSW01_01240at 239.621 kb on - strand, within CSW01_01240at 239.658 kb on + strand, within CSW01_01240at 239.693 kb on + strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.961 kb on + strand, within CSW01_01240at 239.969 kb on - strand, within CSW01_01240at 239.979 kb on + strand, within CSW01_01240at 239.985 kb on - strand, within CSW01_01240at 239.987 kb on - strand, within CSW01_01240at 240.093 kb on + strand, within CSW01_01240at 240.101 kb on - strand, within CSW01_01240at 240.101 kb on - strand, within CSW01_01240at 240.126 kb on - strand, within CSW01_01240at 240.173 kb on + strand, within CSW01_01240at 240.173 kb on + strand, within CSW01_01240at 240.181 kb on - strand, within CSW01_01240at 240.181 kb on - strand, within CSW01_01240at 240.181 kb on - strand, within CSW01_01240at 240.192 kb on - strand, within CSW01_01240at 240.289 kb on + strand, within CSW01_01240at 240.396 kb on - strandat 240.458 kb on - strandat 240.556 kb on - strand, within CSW01_01245at 240.582 kb on - strand, within CSW01_01245at 240.582 kb on - strand, within CSW01_01245at 240.642 kb on + strand, within CSW01_01245at 240.655 kb on - strand, within CSW01_01245at 240.738 kb on + strand, within CSW01_01245at 240.738 kb on + strand, within CSW01_01245at 240.806 kb on + strand, within CSW01_01245at 240.832 kb on + strand, within CSW01_01245at 240.847 kb on + strand, within CSW01_01245at 240.847 kb on + strand, within CSW01_01245at 240.850 kb on - strand, within CSW01_01245at 240.850 kb on - strand, within CSW01_01245at 240.877 kb on - strand, within CSW01_01245at 240.904 kb on + strand, within CSW01_01245at 241.022 kb on - strand, within CSW01_01245at 241.159 kb on - strand, within CSW01_01245at 241.188 kb on - strand, within CSW01_01245at 241.213 kb on + strand, within CSW01_01245at 241.213 kb on + strand, within CSW01_01245at 241.213 kb on + strand, within CSW01_01245at 241.213 kb on + strand, within CSW01_01245at 241.221 kb on - strand, within CSW01_01245at 241.221 kb on - strand, within CSW01_01245at 241.228 kb on - strand, within CSW01_01245at 241.375 kb on + strandat 241.383 kb on - strandat 241.383 kb on - strandat 241.383 kb on - strandat 241.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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238,592 + -3.5
238,652 + CSW01_01235 0.10 -2.0
238,655 - CSW01_01235 0.11 -0.4
238,670 - CSW01_01235 0.13 +0.7
238,701 - CSW01_01235 0.17 -3.7
238,717 - CSW01_01235 0.19 -2.8
238,752 - CSW01_01235 0.23 +1.1
238,754 - CSW01_01235 0.23 -0.6
238,771 - CSW01_01235 0.25 -0.4
238,794 + CSW01_01235 0.28 -3.7
238,794 + CSW01_01235 0.28 -2.9
238,802 - CSW01_01235 0.29 -0.2
238,802 - CSW01_01235 0.29 +0.3
238,802 - CSW01_01235 0.29 +1.3
238,802 - CSW01_01235 0.29 -2.5
238,802 - CSW01_01235 0.29 -0.7
238,807 - CSW01_01235 0.30 -0.4
238,812 - CSW01_01235 0.31 +0.7
238,825 - CSW01_01235 0.32 +0.2
238,846 - CSW01_01235 0.35 -2.6
238,892 - CSW01_01235 0.41 -0.2
238,962 - CSW01_01235 0.50 -0.2
238,989 - CSW01_01235 0.53 -4.9
239,102 - CSW01_01235 0.67 +0.6
239,138 - CSW01_01235 0.72 -3.0
239,148 - CSW01_01235 0.73 -1.2
239,284 - -0.9
239,378 - +0.7
239,429 + -1.3
239,466 + CSW01_01240 0.11 -0.6
239,473 + CSW01_01240 0.11 -0.5
239,474 - CSW01_01240 0.11 -0.1
239,474 - CSW01_01240 0.11 -3.4
239,621 - CSW01_01240 0.25 +0.2
239,658 + CSW01_01240 0.29 -2.3
239,693 + CSW01_01240 0.32 -3.9
239,800 - CSW01_01240 0.42 -0.3
239,800 - CSW01_01240 0.42 -0.7
239,800 - CSW01_01240 0.42 -3.4
239,800 - CSW01_01240 0.42 -0.0
239,800 - CSW01_01240 0.42 -3.8
239,961 + CSW01_01240 0.58 -5.5
239,969 - CSW01_01240 0.58 +0.8
239,979 + CSW01_01240 0.59 -1.3
239,985 - CSW01_01240 0.60 +0.0
239,987 - CSW01_01240 0.60 -3.2
240,093 + CSW01_01240 0.70 -2.2
240,101 - CSW01_01240 0.71 +0.6
240,101 - CSW01_01240 0.71 -1.4
240,126 - CSW01_01240 0.73 -2.5
240,173 + CSW01_01240 0.78 -1.1
240,173 + CSW01_01240 0.78 -2.0
240,181 - CSW01_01240 0.79 -0.6
240,181 - CSW01_01240 0.79 +0.6
240,181 - CSW01_01240 0.79 +0.8
240,192 - CSW01_01240 0.80 -0.4
240,289 + CSW01_01240 0.89 -4.2
240,396 - -0.0
240,458 - +3.1
240,556 - CSW01_01245 0.15 +3.2
240,582 - CSW01_01245 0.17 +4.2
240,582 - CSW01_01245 0.17 +2.5
240,642 + CSW01_01245 0.23 +3.9
240,655 - CSW01_01245 0.24 +4.0
240,738 + CSW01_01245 0.32 +3.2
240,738 + CSW01_01245 0.32 +3.5
240,806 + CSW01_01245 0.39 +3.0
240,832 + CSW01_01245 0.41 +4.2
240,847 + CSW01_01245 0.43 +4.0
240,847 + CSW01_01245 0.43 +3.7
240,850 - CSW01_01245 0.43 +4.3
240,850 - CSW01_01245 0.43 +3.7
240,877 - CSW01_01245 0.46 +1.8
240,904 + CSW01_01245 0.48 +1.8
241,022 - CSW01_01245 0.60 +3.9
241,159 - CSW01_01245 0.73 +3.4
241,188 - CSW01_01245 0.76 +5.0
241,213 + CSW01_01245 0.78 -1.0
241,213 + CSW01_01245 0.78 +1.6
241,213 + CSW01_01245 0.78 +1.3
241,213 + CSW01_01245 0.78 +3.3
241,221 - CSW01_01245 0.79 +4.9
241,221 - CSW01_01245 0.79 +3.3
241,228 - CSW01_01245 0.79 +4.1
241,375 + +3.2
241,383 - +3.0
241,383 - +4.1
241,383 - +3.3
241,383 - +4.3

Or see this region's nucleotide sequence