Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00910

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00890 and CSW01_00895 are separated by 61 nucleotidesCSW01_00895 and CSW01_00900 are separated by 234 nucleotidesCSW01_00900 and CSW01_00905 overlap by 9 nucleotidesCSW01_00905 and CSW01_00910 are separated by 132 nucleotidesCSW01_00910 and CSW01_00915 are separated by 91 nucleotides CSW01_00890: CSW01_00890 - tRNA-His, at 167,584 to 167,659 _00890 CSW01_00895: CSW01_00895 - tRNA-Pro, at 167,721 to 167,797 _00895 CSW01_00900: CSW01_00900 - hypothetical protein, at 168,032 to 168,241 _00900 CSW01_00905: CSW01_00905 - hypothetical protein, at 168,233 to 168,400 _00905 CSW01_00910: CSW01_00910 - ABC transporter ATP-binding protein, at 168,533 to 170,248 _00910 CSW01_00915: CSW01_00915 - nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein, at 170,340 to 171,896 _00915 Position (kb) 168 169 170 171Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 167.536 kb on - strandat 167.806 kb on - strandat 167.877 kb on + strandat 167.998 kb on + strandat 168.001 kb on - strandat 168.023 kb on - strandat 168.025 kb on - strandat 168.120 kb on - strand, within CSW01_00900at 168.463 kb on + strandat 168.476 kb on + strandat 168.484 kb on + strandat 168.486 kb on + strandat 168.486 kb on + strandat 168.494 kb on - strandat 168.494 kb on - strandat 168.494 kb on - strandat 168.496 kb on + strandat 168.496 kb on + strandat 168.496 kb on + strandat 168.504 kb on - strandat 168.504 kb on - strandat 168.512 kb on + strandat 168.522 kb on + strandat 168.620 kb on - strandat 168.700 kb on + strandat 168.708 kb on - strand, within CSW01_00910at 168.708 kb on - strand, within CSW01_00910at 168.708 kb on - strand, within CSW01_00910at 168.708 kb on - strand, within CSW01_00910at 168.708 kb on - strand, within CSW01_00910at 168.734 kb on - strand, within CSW01_00910at 168.756 kb on + strand, within CSW01_00910at 168.824 kb on + strand, within CSW01_00910at 168.842 kb on - strand, within CSW01_00910at 168.847 kb on + strand, within CSW01_00910at 168.847 kb on + strand, within CSW01_00910at 168.855 kb on - strand, within CSW01_00910at 168.890 kb on + strand, within CSW01_00910at 168.911 kb on - strand, within CSW01_00910at 168.969 kb on + strand, within CSW01_00910at 168.977 kb on - strand, within CSW01_00910at 168.981 kb on + strand, within CSW01_00910at 169.011 kb on + strand, within CSW01_00910at 169.092 kb on - strand, within CSW01_00910at 169.163 kb on + strand, within CSW01_00910at 169.176 kb on - strand, within CSW01_00910at 169.208 kb on + strand, within CSW01_00910at 169.210 kb on + strand, within CSW01_00910at 169.213 kb on - strand, within CSW01_00910at 169.241 kb on - strand, within CSW01_00910at 169.261 kb on - strand, within CSW01_00910at 169.263 kb on + strand, within CSW01_00910at 169.263 kb on - strand, within CSW01_00910at 169.265 kb on + strand, within CSW01_00910at 169.271 kb on - strand, within CSW01_00910at 169.271 kb on - strand, within CSW01_00910at 169.273 kb on + strand, within CSW01_00910at 169.273 kb on - strand, within CSW01_00910at 169.273 kb on - strand, within CSW01_00910at 169.273 kb on - strand, within CSW01_00910at 169.281 kb on - strand, within CSW01_00910at 169.281 kb on - strand, within CSW01_00910at 169.282 kb on - strand, within CSW01_00910at 169.282 kb on - strand, within CSW01_00910at 169.373 kb on - strand, within CSW01_00910at 169.395 kb on + strand, within CSW01_00910at 169.395 kb on + strand, within CSW01_00910at 169.395 kb on + strand, within CSW01_00910at 169.405 kb on + strand, within CSW01_00910at 169.405 kb on + strand, within CSW01_00910at 169.407 kb on + strand, within CSW01_00910at 169.413 kb on - strand, within CSW01_00910at 169.415 kb on - strand, within CSW01_00910at 169.415 kb on - strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.572 kb on - strand, within CSW01_00910at 169.598 kb on + strand, within CSW01_00910at 169.614 kb on + strand, within CSW01_00910at 169.624 kb on + strand, within CSW01_00910at 169.624 kb on + strand, within CSW01_00910at 169.624 kb on + strand, within CSW01_00910at 169.652 kb on - strand, within CSW01_00910at 169.657 kb on + strand, within CSW01_00910at 169.659 kb on + strand, within CSW01_00910at 169.744 kb on - strand, within CSW01_00910at 169.857 kb on + strand, within CSW01_00910at 169.909 kb on + strand, within CSW01_00910at 169.982 kb on + strand, within CSW01_00910at 169.992 kb on + strand, within CSW01_00910at 169.995 kb on - strand, within CSW01_00910at 170.104 kb on + strandat 170.112 kb on - strandat 170.127 kb on + strandat 170.163 kb on - strandat 170.182 kb on - strandat 170.227 kb on - strandat 170.263 kb on - strandat 170.265 kb on + strandat 170.444 kb on - strandat 170.455 kb on + strandat 170.465 kb on + strandat 170.560 kb on - strand, within CSW01_00915at 170.714 kb on - strand, within CSW01_00915at 170.714 kb on - strand, within CSW01_00915at 170.761 kb on + strand, within CSW01_00915at 170.816 kb on + strand, within CSW01_00915at 170.816 kb on + strand, within CSW01_00915at 170.816 kb on + strand, within CSW01_00915at 170.824 kb on - strand, within CSW01_00915at 170.824 kb on - strand, within CSW01_00915at 170.828 kb on - strand, within CSW01_00915at 170.875 kb on - strand, within CSW01_00915at 171.012 kb on - strand, within CSW01_00915at 171.020 kb on + strand, within CSW01_00915at 171.038 kb on - strand, within CSW01_00915at 171.053 kb on + strand, within CSW01_00915at 171.056 kb on + strand, within CSW01_00915at 171.056 kb on + strand, within CSW01_00915at 171.124 kb on + strand, within CSW01_00915at 171.132 kb on - strand, within CSW01_00915at 171.132 kb on - strand, within CSW01_00915at 171.132 kb on - strand, within CSW01_00915at 171.148 kb on + strand, within CSW01_00915at 171.149 kb on - strand, within CSW01_00915at 171.182 kb on + strand, within CSW01_00915at 171.217 kb on + strand, within CSW01_00915

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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167,536 - -0.1
167,806 - -2.0
167,877 + +0.1
167,998 + +0.9
168,001 - +1.5
168,023 - +0.4
168,025 - -3.9
168,120 - CSW01_00900 0.42 +0.4
168,463 + -3.2
168,476 + -0.7
168,484 + -0.8
168,486 + +0.4
168,486 + -1.8
168,494 - +0.3
168,494 - +1.4
168,494 - +1.1
168,496 + -1.1
168,496 + -1.3
168,496 + +0.1
168,504 - -2.9
168,504 - +0.1
168,512 + +1.1
168,522 + -3.2
168,620 - +0.4
168,700 + +1.1
168,708 - CSW01_00910 0.10 -0.5
168,708 - CSW01_00910 0.10 -4.0
168,708 - CSW01_00910 0.10 +1.0
168,708 - CSW01_00910 0.10 -0.2
168,708 - CSW01_00910 0.10 +0.3
168,734 - CSW01_00910 0.12 +0.6
168,756 + CSW01_00910 0.13 +0.8
168,824 + CSW01_00910 0.17 -3.0
168,842 - CSW01_00910 0.18 +0.5
168,847 + CSW01_00910 0.18 -1.9
168,847 + CSW01_00910 0.18 -2.9
168,855 - CSW01_00910 0.19 +1.6
168,890 + CSW01_00910 0.21 +1.0
168,911 - CSW01_00910 0.22 -4.7
168,969 + CSW01_00910 0.25 +0.5
168,977 - CSW01_00910 0.26 +0.9
168,981 + CSW01_00910 0.26 -2.3
169,011 + CSW01_00910 0.28 +0.1
169,092 - CSW01_00910 0.33 +3.4
169,163 + CSW01_00910 0.37 +0.3
169,176 - CSW01_00910 0.37 -0.3
169,208 + CSW01_00910 0.39 +2.2
169,210 + CSW01_00910 0.39 +0.8
169,213 - CSW01_00910 0.40 +0.7
169,241 - CSW01_00910 0.41 -0.9
169,261 - CSW01_00910 0.42 +1.1
169,263 + CSW01_00910 0.43 -2.6
169,263 - CSW01_00910 0.43 -3.4
169,265 + CSW01_00910 0.43 +2.4
169,271 - CSW01_00910 0.43 -2.6
169,271 - CSW01_00910 0.43 -4.1
169,273 + CSW01_00910 0.43 +1.2
169,273 - CSW01_00910 0.43 +3.1
169,273 - CSW01_00910 0.43 +0.4
169,273 - CSW01_00910 0.43 +1.0
169,281 - CSW01_00910 0.44 -0.6
169,281 - CSW01_00910 0.44 -2.2
169,282 - CSW01_00910 0.44 -2.8
169,282 - CSW01_00910 0.44 +1.5
169,373 - CSW01_00910 0.49 +1.5
169,395 + CSW01_00910 0.50 -5.1
169,395 + CSW01_00910 0.50 +0.6
169,395 + CSW01_00910 0.50 -0.1
169,405 + CSW01_00910 0.51 +0.4
169,405 + CSW01_00910 0.51 +0.0
169,407 + CSW01_00910 0.51 -3.0
169,413 - CSW01_00910 0.51 -0.2
169,415 - CSW01_00910 0.51 +1.4
169,415 - CSW01_00910 0.51 -3.0
169,554 + CSW01_00910 0.59 +0.5
169,554 + CSW01_00910 0.59 +0.5
169,554 + CSW01_00910 0.59 -0.5
169,554 + CSW01_00910 0.59 +0.8
169,554 + CSW01_00910 0.59 +0.3
169,554 + CSW01_00910 0.59 +0.8
169,554 + CSW01_00910 0.59 -0.4
169,554 + CSW01_00910 0.59 -2.9
169,562 - CSW01_00910 0.60 +0.7
169,562 - CSW01_00910 0.60 +0.4
169,562 - CSW01_00910 0.60 -0.6
169,562 - CSW01_00910 0.60 -2.8
169,562 - CSW01_00910 0.60 +0.1
169,562 - CSW01_00910 0.60 +0.8
169,562 - CSW01_00910 0.60 -0.1
169,562 - CSW01_00910 0.60 -0.1
169,562 - CSW01_00910 0.60 +0.2
169,562 - CSW01_00910 0.60 +0.1
169,562 - CSW01_00910 0.60 +0.7
169,562 - CSW01_00910 0.60 -3.5
169,562 - CSW01_00910 0.60 -0.9
169,562 - CSW01_00910 0.60 +0.5
169,562 - CSW01_00910 0.60 +2.2
169,562 - CSW01_00910 0.60 +1.1
169,562 - CSW01_00910 0.60 -0.2
169,562 - CSW01_00910 0.60 +1.1
169,562 - CSW01_00910 0.60 +1.3
169,562 - CSW01_00910 0.60 -3.8
169,572 - CSW01_00910 0.61 +0.6
169,598 + CSW01_00910 0.62 +0.4
169,614 + CSW01_00910 0.63 +1.6
169,624 + CSW01_00910 0.64 -1.0
169,624 + CSW01_00910 0.64 -3.9
169,624 + CSW01_00910 0.64 +0.1
169,652 - CSW01_00910 0.65 +0.8
169,657 + CSW01_00910 0.66 -3.7
169,659 + CSW01_00910 0.66 -0.2
169,744 - CSW01_00910 0.71 -3.3
169,857 + CSW01_00910 0.77 -2.0
169,909 + CSW01_00910 0.80 +0.7
169,982 + CSW01_00910 0.84 -0.3
169,992 + CSW01_00910 0.85 -0.6
169,995 - CSW01_00910 0.85 +1.1
170,104 + +0.9
170,112 - -2.2
170,127 + +0.8
170,163 - -0.5
170,182 - +0.3
170,227 - +1.8
170,263 - +2.1
170,265 + -3.6
170,444 - -0.4
170,455 + +1.3
170,465 + -0.5
170,560 - CSW01_00915 0.14 -0.9
170,714 - CSW01_00915 0.24 -4.1
170,714 - CSW01_00915 0.24 -0.3
170,761 + CSW01_00915 0.27 +1.1
170,816 + CSW01_00915 0.31 +0.7
170,816 + CSW01_00915 0.31 -0.0
170,816 + CSW01_00915 0.31 +0.4
170,824 - CSW01_00915 0.31 -4.0
170,824 - CSW01_00915 0.31 -1.3
170,828 - CSW01_00915 0.31 -2.7
170,875 - CSW01_00915 0.34 -2.1
171,012 - CSW01_00915 0.43 -0.3
171,020 + CSW01_00915 0.44 -3.0
171,038 - CSW01_00915 0.45 -3.2
171,053 + CSW01_00915 0.46 +0.7
171,056 + CSW01_00915 0.46 +1.9
171,056 + CSW01_00915 0.46 +0.2
171,124 + CSW01_00915 0.50 +0.3
171,132 - CSW01_00915 0.51 +0.3
171,132 - CSW01_00915 0.51 +0.9
171,132 - CSW01_00915 0.51 -2.7
171,148 + CSW01_00915 0.52 -1.0
171,149 - CSW01_00915 0.52 -2.8
171,182 + CSW01_00915 0.54 +0.4
171,217 + CSW01_00915 0.56 +0.6

Or see this region's nucleotide sequence