Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00675

Experiment: ICP3_phage_4.1_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_4.1_MOI_rep2
127,449	+		CSW01_00670	0.36	+1.0
127,449	+		CSW01_00670	0.36	-0.3
127,457	-		CSW01_00670	0.37	+2.0
127,457	-		CSW01_00670	0.37	-1.5
127,457	-		CSW01_00670	0.37	-0.6
127,457	-		CSW01_00670	0.37	+0.7
127,457	-		CSW01_00670	0.37	+0.2
127,457	-		CSW01_00670	0.37	+0.5
127,468	+		CSW01_00670	0.38	+0.6
127,497	+		CSW01_00670	0.39	+0.1
127,505	-		CSW01_00670	0.40	+0.1
127,549	-		CSW01_00670	0.43	+0.7
127,568	+		CSW01_00670	0.44	+0.1
127,571	-		CSW01_00670	0.44	-2.6
127,573	+		CSW01_00670	0.44	-1.5
127,573	+		CSW01_00670	0.44	-3.5
127,573	+		CSW01_00670	0.44	-3.6
127,573	+		CSW01_00670	0.44	+1.6
127,573	+		CSW01_00670	0.44	+0.8
127,581	-		CSW01_00670	0.45	+1.1
127,581	-		CSW01_00670	0.45	-4.5
127,581	-		CSW01_00670	0.45	-3.9
127,587	+		CSW01_00670	0.45	-0.2
127,601	-		CSW01_00670	0.46	-2.1
127,629	+		CSW01_00670	0.48	+1.1
127,637	-		CSW01_00670	0.48	-2.9
127,641	-		CSW01_00670	0.49	+0.7
127,648	+		CSW01_00670	0.49	+0.7
127,684	-		CSW01_00670	0.52	-0.6
127,686	+		CSW01_00670	0.52	-0.6
127,722	+		CSW01_00670	0.54	+0.3
127,761	+		CSW01_00670	0.57	+2.7
127,769	-		CSW01_00670	0.57	-0.0
127,786	-		CSW01_00670	0.58	-4.0
127,790	+		CSW01_00670	0.58	+1.0
127,798	-		CSW01_00670	0.59	+1.0
127,811	+		CSW01_00670	0.60	-1.0
127,811	+		CSW01_00670	0.60	+1.4
127,811	+		CSW01_00670	0.60	+1.1
127,818	+		CSW01_00670	0.60	-0.1
127,819	-		CSW01_00670	0.60	+1.3
127,833	+		CSW01_00670	0.61	+0.6
127,833	+		CSW01_00670	0.61	-2.4
127,841	-		CSW01_00670	0.62	-2.1
127,841	-		CSW01_00670	0.62	-0.2
127,841	-		CSW01_00670	0.62	-0.1
127,841	-		CSW01_00670	0.62	-0.6
127,933	-		CSW01_00670	0.68	-2.4
127,936	+		CSW01_00670	0.68	+0.8
127,947	+		CSW01_00670	0.69	+0.1
128,012	+		CSW01_00670	0.73	+0.2
128,024	+		CSW01_00670	0.74	-0.3
128,024	+		CSW01_00670	0.74	-3.1
128,032	-		CSW01_00670	0.74	+0.4
128,032	-		CSW01_00670	0.74	+1.7
128,032	-		CSW01_00670	0.74	-1.0
128,032	-		CSW01_00670	0.74	-3.5
128,054	+		CSW01_00670	0.75	+1.2
128,062	-		CSW01_00670	0.76	+0.1
128,094	+		CSW01_00670	0.78	+1.2
128,094	+		CSW01_00670	0.78	-2.4
128,102	-		CSW01_00670	0.79	-3.0
128,125	-		CSW01_00670	0.80	+0.6
128,142	+		CSW01_00670	0.81	-2.0
128,161	+		CSW01_00670	0.82	+0.5
128,166	-		CSW01_00670	0.83	-2.5
128,204	+		CSW01_00670	0.85	-1.7
128,214	+		CSW01_00670	0.86	-3.6
128,237	+		CSW01_00670	0.87	-2.7
128,237	+		CSW01_00670	0.87	-1.0
128,244	+		CSW01_00670	0.88	-0.3
128,245	-		CSW01_00670	0.88	+0.5
128,245	-		CSW01_00670	0.88	-1.9
128,252	+		CSW01_00670	0.88	-2.0
128,260	-		CSW01_00670	0.89	-1.8
128,260	-		CSW01_00670	0.89	+0.7
128,282	+				+0.9
128,282	+				-3.0
128,282	+				-0.1
128,282	+				-3.4
128,282	+				-4.1
128,282	+				+0.4
128,282	+				-0.9
128,282	+				-1.6
128,282	+				+0.2
128,282	+				+1.2
128,282	+				-3.2
128,282	+				+0.9
128,282	+				-1.3
128,282	+				-0.5
128,282	+				-2.2
128,282	+				+0.2
128,282	+				+1.7
128,282	+				+0.6
128,282	+				-1.1
128,282	+				-1.7
128,282	+				+0.3
128,282	+				+0.7
128,282	+				-4.5
128,290	-				-2.2
128,290	-				-0.7
128,290	-				-0.4
128,290	-				-1.5
128,290	-				-2.4
128,290	-				+0.7
128,290	-				-4.3
128,290	-				-1.1
128,290	-				+0.9
128,290	-				-0.1
128,290	-				-2.6
128,290	-				-1.5
128,290	-				-1.7
128,290	-				-1.0
128,290	-				+1.7
128,290	-				+0.1
128,290	-				+0.7
128,290	-				-2.4
128,290	-				-0.4
128,290	-				+1.8
128,290	-				+0.7
128,290	-				-1.2
128,290	-				+1.6
128,290	-				-3.9
128,290	-				-0.4
128,290	-				+0.6
128,290	-				-4.0
128,290	-				-3.7
128,290	-				-4.8
128,290	-				+0.5
128,290	-				-2.4
128,290	-				+1.4
128,290	-				+0.2
128,290	-				+1.1
128,290	-				+0.8
128,290	-				-0.9
128,305	-				+2.0
128,331	+				+0.3
128,358	-				-1.5
128,373	-				-0.0
128,383	+				-0.1
128,396	-				-1.7
128,418	-				-0.3
128,425	+				+1.6
128,426	-				-0.4
128,426	-				-3.3
128,426	-				+0.7
128,453	+				-0.6
128,453	+				+0.7
128,466	-		CSW01_00675	0.11	+1.2
128,523	+		CSW01_00675	0.41	-1.4
128,556	-		CSW01_00675	0.59	-0.0
128,627	+				-4.5
128,635	-				-0.4
128,635	-				-0.2
128,671	+				+1.0
128,692	+				+0.2
128,714	+				-2.0
128,722	-				+0.7
128,767	+				+0.1
128,826	-		CSW01_00680	0.13	-0.1
128,903	+		CSW01_00680	0.23	+0.4
128,904	+		CSW01_00680	0.23	-0.0
128,905	+		CSW01_00680	0.23	+0.8
128,912	-		CSW01_00680	0.24	+0.6
128,920	-		CSW01_00680	0.25	+0.2
128,932	-		CSW01_00680	0.26	-2.3
128,932	-		CSW01_00680	0.26	+0.9
128,959	+		CSW01_00680	0.29	-3.1
128,964	+		CSW01_00680	0.30	+1.8
128,964	+		CSW01_00680	0.30	+0.1
128,965	-		CSW01_00680	0.30	-0.2
128,972	-		CSW01_00680	0.31	-1.0
128,979	-		CSW01_00680	0.32	+1.3
128,979	-		CSW01_00680	0.32	+0.6
129,029	+		CSW01_00680	0.38	-1.0
129,029	+		CSW01_00680	0.38	-1.0
129,029	+		CSW01_00680	0.38	-0.5
129,029	+		CSW01_00680	0.38	-2.5
129,037	-		CSW01_00680	0.39	+0.7
129,037	-		CSW01_00680	0.39	+1.0
129,039	+		CSW01_00680	0.39	+1.1
129,124	-		CSW01_00680	0.49	-2.8
129,202	+		CSW01_00680	0.59	-1.0
129,210	-		CSW01_00680	0.60	-0.9
129,301	-		CSW01_00680	0.71	+0.7
129,320	-		CSW01_00680	0.73	-0.5
129,382	-		CSW01_00680	0.80	-2.8
129,417	-		CSW01_00680	0.85	-3.7
129,582	+				+1.5
129,582	+				+0.2
129,582	+				+0.4
129,582	+				-0.6
129,582	+				+1.0
129,582	+				-4.0
129,589	-				+0.5
129,590	-				-3.0
129,590	-				-0.7
129,590	-				+2.0
129,590	-				-4.0
129,590	-				-2.0
129,597	-				-1.0
129,600	-				-3.0
129,605	-				-3.4
129,605	-				+0.4
129,605	-				-3.4