Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00470

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00455 and CSW01_00460 are separated by 59 nucleotidesCSW01_00460 and CSW01_00465 are separated by 3 nucleotidesCSW01_00465 and CSW01_00470 are separated by 88 nucleotidesCSW01_00470 and CSW01_00475 are separated by 311 nucleotides CSW01_00455: CSW01_00455 - ubiquinone biosynthesis protein UbiB, at 83,075 to 84,709 _00455 CSW01_00460: CSW01_00460 - twin-arginine translocase subunit TatA, at 84,769 to 85,017 _00460 CSW01_00465: CSW01_00465 - twin-arginine translocase subunit TatB, at 85,021 to 85,422 _00465 CSW01_00470: CSW01_00470 - twin-arginine translocase subunit TatC, at 85,511 to 86,263 _00470 CSW01_00475: CSW01_00475 - cytochrome C biogenesis protein CcsA, at 86,575 to 87,576 _00475 Position (kb) 85 86 87Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 84.859 kb on + strand, within CSW01_00460at 84.859 kb on + strand, within CSW01_00460at 84.859 kb on + strand, within CSW01_00460at 84.859 kb on + strand, within CSW01_00460at 84.867 kb on - strand, within CSW01_00460at 84.867 kb on - strand, within CSW01_00460at 84.867 kb on - strand, within CSW01_00460at 84.867 kb on - strand, within CSW01_00460at 84.874 kb on + strand, within CSW01_00460at 84.882 kb on - strand, within CSW01_00460at 84.915 kb on - strand, within CSW01_00460at 84.966 kb on + strand, within CSW01_00460at 84.966 kb on + strand, within CSW01_00460at 85.011 kb on + strandat 85.011 kb on + strandat 85.011 kb on + strandat 85.011 kb on + strandat 85.019 kb on - strandat 85.053 kb on + strandat 85.090 kb on - strand, within CSW01_00465at 85.098 kb on - strand, within CSW01_00465at 85.169 kb on - strand, within CSW01_00465at 85.209 kb on + strand, within CSW01_00465at 85.310 kb on + strand, within CSW01_00465at 85.373 kb on + strand, within CSW01_00465at 85.391 kb on + strandat 85.466 kb on + strandat 85.511 kb on - strandat 85.551 kb on + strandat 85.632 kb on + strand, within CSW01_00470at 85.706 kb on + strand, within CSW01_00470at 85.791 kb on - strand, within CSW01_00470at 85.898 kb on - strand, within CSW01_00470at 85.951 kb on - strand, within CSW01_00470at 85.951 kb on - strand, within CSW01_00470at 86.038 kb on - strand, within CSW01_00470at 86.047 kb on + strand, within CSW01_00470at 86.091 kb on + strand, within CSW01_00470at 86.175 kb on - strand, within CSW01_00470at 86.291 kb on + strandat 86.292 kb on - strandat 86.299 kb on - strandat 86.312 kb on - strandat 86.405 kb on + strandat 86.420 kb on - strandat 86.477 kb on + strandat 86.511 kb on + strandat 86.527 kb on - strandat 86.537 kb on - strandat 86.608 kb on - strandat 86.608 kb on - strandat 86.618 kb on - strandat 86.626 kb on + strandat 86.626 kb on + strandat 86.626 kb on + strandat 86.652 kb on + strandat 86.668 kb on - strandat 86.670 kb on + strandat 86.670 kb on + strandat 86.678 kb on - strand, within CSW01_00475at 86.753 kb on + strand, within CSW01_00475at 86.760 kb on - strand, within CSW01_00475at 86.760 kb on - strand, within CSW01_00475at 86.761 kb on - strand, within CSW01_00475at 86.762 kb on + strand, within CSW01_00475at 86.804 kb on + strand, within CSW01_00475at 86.821 kb on + strand, within CSW01_00475at 86.829 kb on - strand, within CSW01_00475at 86.839 kb on + strand, within CSW01_00475at 86.839 kb on + strand, within CSW01_00475at 86.847 kb on - strand, within CSW01_00475at 86.847 kb on - strand, within CSW01_00475at 86.865 kb on + strand, within CSW01_00475at 86.897 kb on - strand, within CSW01_00475at 86.897 kb on - strand, within CSW01_00475at 86.922 kb on - strand, within CSW01_00475at 86.978 kb on + strand, within CSW01_00475at 86.978 kb on + strand, within CSW01_00475at 86.978 kb on + strand, within CSW01_00475at 86.996 kb on - strand, within CSW01_00475at 87.162 kb on - strand, within CSW01_00475at 87.178 kb on - strand, within CSW01_00475at 87.206 kb on + strand, within CSW01_00475

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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84,859 + CSW01_00460 0.36 -0.7
84,859 + CSW01_00460 0.36 -3.1
84,859 + CSW01_00460 0.36 -0.2
84,859 + CSW01_00460 0.36 -3.0
84,867 - CSW01_00460 0.39 -1.3
84,867 - CSW01_00460 0.39 -4.2
84,867 - CSW01_00460 0.39 -2.2
84,867 - CSW01_00460 0.39 -2.7
84,874 + CSW01_00460 0.42 -2.0
84,882 - CSW01_00460 0.45 -4.4
84,915 - CSW01_00460 0.59 +0.2
84,966 + CSW01_00460 0.79 -1.9
84,966 + CSW01_00460 0.79 -4.7
85,011 + -0.2
85,011 + -0.2
85,011 + -3.0
85,011 + -2.7
85,019 - -3.2
85,053 + -3.7
85,090 - CSW01_00465 0.17 -2.6
85,098 - CSW01_00465 0.19 -3.0
85,169 - CSW01_00465 0.37 -1.2
85,209 + CSW01_00465 0.47 -4.2
85,310 + CSW01_00465 0.72 +1.1
85,373 + CSW01_00465 0.88 -4.1
85,391 + +0.2
85,466 + -0.7
85,511 - -3.7
85,551 + -3.0
85,632 + CSW01_00470 0.16 -4.3
85,706 + CSW01_00470 0.26 -1.2
85,791 - CSW01_00470 0.37 -3.8
85,898 - CSW01_00470 0.51 -2.5
85,951 - CSW01_00470 0.58 -0.6
85,951 - CSW01_00470 0.58 -1.8
86,038 - CSW01_00470 0.70 -1.6
86,047 + CSW01_00470 0.71 -1.6
86,091 + CSW01_00470 0.77 -2.2
86,175 - CSW01_00470 0.88 +0.1
86,291 + +1.3
86,292 - +0.5
86,299 - +1.1
86,312 - +0.2
86,405 + +0.5
86,420 - +1.1
86,477 + +0.3
86,511 + -1.2
86,527 - -2.6
86,537 - -2.1
86,608 - +0.1
86,608 - +0.5
86,618 - -3.6
86,626 + -2.0
86,626 + +0.4
86,626 + -3.5
86,652 + +2.3
86,668 - -0.9
86,670 + +0.4
86,670 + +0.9
86,678 - CSW01_00475 0.10 -0.5
86,753 + CSW01_00475 0.18 -3.6
86,760 - CSW01_00475 0.18 +1.2
86,760 - CSW01_00475 0.18 +0.6
86,761 - CSW01_00475 0.19 +0.4
86,762 + CSW01_00475 0.19 -3.9
86,804 + CSW01_00475 0.23 +1.1
86,821 + CSW01_00475 0.25 -0.7
86,829 - CSW01_00475 0.25 +1.0
86,839 + CSW01_00475 0.26 -3.5
86,839 + CSW01_00475 0.26 -0.4
86,847 - CSW01_00475 0.27 -2.3
86,847 - CSW01_00475 0.27 -0.4
86,865 + CSW01_00475 0.29 +0.6
86,897 - CSW01_00475 0.32 +0.7
86,897 - CSW01_00475 0.32 -4.7
86,922 - CSW01_00475 0.35 +0.7
86,978 + CSW01_00475 0.40 -0.6
86,978 + CSW01_00475 0.40 -0.2
86,978 + CSW01_00475 0.40 -2.0
86,996 - CSW01_00475 0.42 +0.3
87,162 - CSW01_00475 0.59 +1.0
87,178 - CSW01_00475 0.60 -4.4
87,206 + CSW01_00475 0.63 +1.0

Or see this region's nucleotide sequence