Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00400

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00390 and CSW01_00395 are separated by 59 nucleotidesCSW01_00395 and CSW01_00400 are separated by 117 nucleotidesCSW01_00400 and CSW01_00405 are separated by 95 nucleotides CSW01_00390: CSW01_00390 - GGDEF domain-containing protein, at 71,513 to 73,819 _00390 CSW01_00395: CSW01_00395 - ribosomal RNA small subunit methyltransferase J, at 73,879 to 74,664 _00395 CSW01_00400: CSW01_00400 - hypothetical protein, at 74,782 to 75,171 _00400 CSW01_00405: CSW01_00405 - EamA family transporter, at 75,267 to 76,154 _00405 Position (kb) 74 75 76Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 73.814 kb on + strandat 73.814 kb on + strandat 73.821 kb on - strandat 73.822 kb on - strandat 73.822 kb on - strandat 73.822 kb on - strandat 73.822 kb on - strandat 73.905 kb on + strandat 73.913 kb on - strandat 73.913 kb on - strandat 73.951 kb on + strandat 73.951 kb on + strandat 73.959 kb on - strand, within CSW01_00395at 73.978 kb on + strand, within CSW01_00395at 74.000 kb on + strand, within CSW01_00395at 74.000 kb on + strand, within CSW01_00395at 74.000 kb on + strand, within CSW01_00395at 74.000 kb on + strand, within CSW01_00395at 74.008 kb on - strand, within CSW01_00395at 74.008 kb on - strand, within CSW01_00395at 74.008 kb on - strand, within CSW01_00395at 74.024 kb on + strand, within CSW01_00395at 74.063 kb on + strand, within CSW01_00395at 74.063 kb on - strand, within CSW01_00395at 74.068 kb on + strand, within CSW01_00395at 74.074 kb on - strand, within CSW01_00395at 74.076 kb on - strand, within CSW01_00395at 74.095 kb on + strand, within CSW01_00395at 74.103 kb on - strand, within CSW01_00395at 74.130 kb on + strand, within CSW01_00395at 74.133 kb on - strand, within CSW01_00395at 74.133 kb on - strand, within CSW01_00395at 74.137 kb on + strand, within CSW01_00395at 74.138 kb on - strand, within CSW01_00395at 74.151 kb on + strand, within CSW01_00395at 74.170 kb on + strand, within CSW01_00395at 74.170 kb on + strand, within CSW01_00395at 74.170 kb on + strand, within CSW01_00395at 74.170 kb on + strand, within CSW01_00395at 74.170 kb on + strand, within CSW01_00395at 74.170 kb on + strand, within CSW01_00395at 74.178 kb on - strand, within CSW01_00395at 74.178 kb on - strand, within CSW01_00395at 74.178 kb on - strand, within CSW01_00395at 74.183 kb on + strand, within CSW01_00395at 74.200 kb on + strand, within CSW01_00395at 74.200 kb on + strand, within CSW01_00395at 74.218 kb on - strand, within CSW01_00395at 74.218 kb on - strand, within CSW01_00395at 74.227 kb on - strand, within CSW01_00395at 74.250 kb on - strand, within CSW01_00395at 74.250 kb on - strand, within CSW01_00395at 74.263 kb on + strand, within CSW01_00395at 74.297 kb on + strand, within CSW01_00395at 74.299 kb on + strand, within CSW01_00395at 74.324 kb on - strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.341 kb on - strand, within CSW01_00395at 74.341 kb on - strand, within CSW01_00395at 74.341 kb on - strand, within CSW01_00395at 74.350 kb on - strand, within CSW01_00395at 74.394 kb on + strand, within CSW01_00395at 74.394 kb on + strand, within CSW01_00395at 74.394 kb on + strand, within CSW01_00395at 74.402 kb on - strand, within CSW01_00395at 74.402 kb on - strand, within CSW01_00395at 74.407 kb on - strand, within CSW01_00395at 74.411 kb on + strand, within CSW01_00395at 74.481 kb on + strand, within CSW01_00395at 74.488 kb on + strand, within CSW01_00395at 74.499 kb on + strand, within CSW01_00395at 74.501 kb on + strand, within CSW01_00395at 74.511 kb on + strand, within CSW01_00395at 74.511 kb on + strand, within CSW01_00395at 74.511 kb on + strand, within CSW01_00395at 74.511 kb on + strand, within CSW01_00395at 74.519 kb on - strand, within CSW01_00395at 74.519 kb on - strand, within CSW01_00395at 74.549 kb on + strand, within CSW01_00395at 74.684 kb on + strandat 74.692 kb on + strandat 74.790 kb on + strandat 74.791 kb on + strandat 74.848 kb on - strand, within CSW01_00400at 74.939 kb on + strand, within CSW01_00400at 74.980 kb on + strand, within CSW01_00400at 75.130 kb on + strand, within CSW01_00400at 75.144 kb on + strandat 75.144 kb on - strandat 75.144 kb on - strandat 75.154 kb on + strandat 75.154 kb on + strandat 75.193 kb on - strandat 75.199 kb on - strandat 75.270 kb on + strandat 75.278 kb on - strandat 75.295 kb on - strandat 75.417 kb on + strand, within CSW01_00405at 75.447 kb on + strand, within CSW01_00405at 75.465 kb on + strand, within CSW01_00405at 75.478 kb on + strand, within CSW01_00405at 75.486 kb on - strand, within CSW01_00405at 75.501 kb on - strand, within CSW01_00405at 75.511 kb on - strand, within CSW01_00405at 75.518 kb on + strand, within CSW01_00405at 75.518 kb on + strand, within CSW01_00405at 75.518 kb on + strand, within CSW01_00405at 75.521 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.540 kb on + strand, within CSW01_00405at 75.545 kb on + strand, within CSW01_00405at 75.593 kb on - strand, within CSW01_00405at 75.650 kb on - strand, within CSW01_00405at 75.650 kb on - strand, within CSW01_00405at 75.661 kb on - strand, within CSW01_00405at 75.698 kb on - strand, within CSW01_00405at 75.706 kb on + strand, within CSW01_00405at 75.713 kb on + strand, within CSW01_00405at 75.750 kb on + strand, within CSW01_00405at 75.786 kb on + strand, within CSW01_00405at 75.787 kb on - strand, within CSW01_00405at 75.792 kb on - strand, within CSW01_00405at 75.792 kb on - strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.894 kb on + strand, within CSW01_00405at 75.896 kb on - strand, within CSW01_00405at 75.896 kb on - strand, within CSW01_00405at 75.904 kb on + strand, within CSW01_00405at 75.937 kb on + strand, within CSW01_00405at 75.951 kb on + strand, within CSW01_00405at 75.953 kb on + strand, within CSW01_00405at 75.996 kb on + strand, within CSW01_00405at 75.996 kb on + strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.037 kb on - strand, within CSW01_00405at 76.046 kb on - strand, within CSW01_00405at 76.085 kb on - strandat 76.099 kb on - strandat 76.099 kb on - strandat 76.128 kb on - strandat 76.147 kb on - strandat 76.151 kb on + strandat 76.151 kb on + strandat 76.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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73,814 + -0.4
73,814 + -4.4
73,821 - +0.8
73,822 - -0.9
73,822 - -1.9
73,822 - -2.2
73,822 - +1.0
73,905 + -0.1
73,913 - -0.7
73,913 - -1.1
73,951 + -1.9
73,951 + +0.9
73,959 - CSW01_00395 0.10 -4.2
73,978 + CSW01_00395 0.13 +0.2
74,000 + CSW01_00395 0.15 -0.0
74,000 + CSW01_00395 0.15 -2.7
74,000 + CSW01_00395 0.15 -1.0
74,000 + CSW01_00395 0.15 -0.8
74,008 - CSW01_00395 0.16 +1.1
74,008 - CSW01_00395 0.16 +1.5
74,008 - CSW01_00395 0.16 +0.9
74,024 + CSW01_00395 0.18 -0.9
74,063 + CSW01_00395 0.23 +0.3
74,063 - CSW01_00395 0.23 -1.2
74,068 + CSW01_00395 0.24 -0.2
74,074 - CSW01_00395 0.25 -0.2
74,076 - CSW01_00395 0.25 -2.3
74,095 + CSW01_00395 0.27 +2.0
74,103 - CSW01_00395 0.28 -0.5
74,130 + CSW01_00395 0.32 +0.6
74,133 - CSW01_00395 0.32 -3.3
74,133 - CSW01_00395 0.32 -2.3
74,137 + CSW01_00395 0.33 +1.6
74,138 - CSW01_00395 0.33 -2.6
74,151 + CSW01_00395 0.35 +0.8
74,170 + CSW01_00395 0.37 +0.9
74,170 + CSW01_00395 0.37 +1.3
74,170 + CSW01_00395 0.37 -1.3
74,170 + CSW01_00395 0.37 -2.4
74,170 + CSW01_00395 0.37 -0.5
74,170 + CSW01_00395 0.37 -3.5
74,178 - CSW01_00395 0.38 +1.6
74,178 - CSW01_00395 0.38 +1.0
74,178 - CSW01_00395 0.38 -3.8
74,183 + CSW01_00395 0.39 -0.5
74,200 + CSW01_00395 0.41 +0.0
74,200 + CSW01_00395 0.41 -2.7
74,218 - CSW01_00395 0.43 -2.4
74,218 - CSW01_00395 0.43 -3.1
74,227 - CSW01_00395 0.44 -4.0
74,250 - CSW01_00395 0.47 -0.9
74,250 - CSW01_00395 0.47 -2.2
74,263 + CSW01_00395 0.49 +0.6
74,297 + CSW01_00395 0.53 -4.0
74,299 + CSW01_00395 0.53 -0.5
74,324 - CSW01_00395 0.57 +1.1
74,333 + CSW01_00395 0.58 -0.5
74,333 + CSW01_00395 0.58 -2.7
74,333 + CSW01_00395 0.58 -1.7
74,333 + CSW01_00395 0.58 -1.6
74,333 + CSW01_00395 0.58 +1.0
74,333 + CSW01_00395 0.58 +0.8
74,341 - CSW01_00395 0.59 +1.3
74,341 - CSW01_00395 0.59 +0.4
74,341 - CSW01_00395 0.59 -0.5
74,350 - CSW01_00395 0.60 -3.9
74,394 + CSW01_00395 0.66 -0.2
74,394 + CSW01_00395 0.66 +0.6
74,394 + CSW01_00395 0.66 +0.1
74,402 - CSW01_00395 0.67 -0.1
74,402 - CSW01_00395 0.67 -2.6
74,407 - CSW01_00395 0.67 +0.2
74,411 + CSW01_00395 0.68 +1.8
74,481 + CSW01_00395 0.77 +0.2
74,488 + CSW01_00395 0.77 -0.6
74,499 + CSW01_00395 0.79 +0.5
74,501 + CSW01_00395 0.79 -2.4
74,511 + CSW01_00395 0.80 -2.7
74,511 + CSW01_00395 0.80 -2.4
74,511 + CSW01_00395 0.80 -0.1
74,511 + CSW01_00395 0.80 -0.4
74,519 - CSW01_00395 0.81 -0.1
74,519 - CSW01_00395 0.81 -0.9
74,549 + CSW01_00395 0.85 -1.5
74,684 + -2.3
74,692 + +0.7
74,790 + -0.0
74,791 + +1.2
74,848 - CSW01_00400 0.17 -0.3
74,939 + CSW01_00400 0.40 -4.5
74,980 + CSW01_00400 0.51 +0.4
75,130 + CSW01_00400 0.89 -0.4
75,144 + -4.0
75,144 - -1.9
75,144 - +2.0
75,154 + -1.4
75,154 + +0.3
75,193 - -3.4
75,199 - +1.0
75,270 + -4.2
75,278 - -0.4
75,295 - +0.4
75,417 + CSW01_00405 0.17 -0.1
75,447 + CSW01_00405 0.20 -3.1
75,465 + CSW01_00405 0.22 -0.3
75,478 + CSW01_00405 0.24 -0.9
75,486 - CSW01_00405 0.25 +0.2
75,501 - CSW01_00405 0.26 -2.2
75,511 - CSW01_00405 0.27 -0.5
75,518 + CSW01_00405 0.28 -2.4
75,518 + CSW01_00405 0.28 +0.1
75,518 + CSW01_00405 0.28 +1.7
75,521 - CSW01_00405 0.29 +0.6
75,526 - CSW01_00405 0.29 +1.5
75,526 - CSW01_00405 0.29 -3.6
75,526 - CSW01_00405 0.29 -1.7
75,526 - CSW01_00405 0.29 +0.1
75,526 - CSW01_00405 0.29 -0.3
75,526 - CSW01_00405 0.29 -1.1
75,540 + CSW01_00405 0.31 +0.2
75,545 + CSW01_00405 0.31 +0.6
75,593 - CSW01_00405 0.37 -3.9
75,650 - CSW01_00405 0.43 +0.1
75,650 - CSW01_00405 0.43 -0.1
75,661 - CSW01_00405 0.44 -5.3
75,698 - CSW01_00405 0.49 +0.9
75,706 + CSW01_00405 0.49 +0.8
75,713 + CSW01_00405 0.50 -0.3
75,750 + CSW01_00405 0.54 -0.8
75,786 + CSW01_00405 0.58 +0.8
75,787 - CSW01_00405 0.59 +1.0
75,792 - CSW01_00405 0.59 +0.4
75,792 - CSW01_00405 0.59 +1.1
75,888 + CSW01_00405 0.70 +0.2
75,888 + CSW01_00405 0.70 +0.9
75,888 + CSW01_00405 0.70 -0.9
75,888 + CSW01_00405 0.70 +0.7
75,888 + CSW01_00405 0.70 -0.1
75,894 + CSW01_00405 0.71 +0.5
75,896 - CSW01_00405 0.71 -0.8
75,896 - CSW01_00405 0.71 -3.5
75,904 + CSW01_00405 0.72 -2.9
75,937 + CSW01_00405 0.75 -1.3
75,951 + CSW01_00405 0.77 -3.2
75,953 + CSW01_00405 0.77 +0.2
75,996 + CSW01_00405 0.82 +0.3
75,996 + CSW01_00405 0.82 +1.3
76,004 - CSW01_00405 0.83 +1.4
76,004 - CSW01_00405 0.83 -3.2
76,004 - CSW01_00405 0.83 +0.2
76,004 - CSW01_00405 0.83 -0.6
76,037 - CSW01_00405 0.87 +0.0
76,046 - CSW01_00405 0.88 +0.9
76,085 - -0.3
76,099 - -0.6
76,099 - +0.3
76,128 - +1.8
76,147 - +0.4
76,151 + -1.8
76,151 + -2.8
76,151 + +0.7

Or see this region's nucleotide sequence