Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00380

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00375 and CSW01_00380 are separated by 103 nucleotidesCSW01_00380 and CSW01_00385 are separated by 88 nucleotidesCSW01_00385 and CSW01_00390 are separated by 75 nucleotides CSW01_00375: CSW01_00375 - Bcr/CflA family drug resistance efflux transporter, at 69,297 to 70,499 _00375 CSW01_00380: CSW01_00380 - hypothetical protein, at 70,603 to 70,887 _00380 CSW01_00385: CSW01_00385 - transcriptional regulator AsnC, at 70,976 to 71,437 _00385 CSW01_00390: CSW01_00390 - GGDEF domain-containing protein, at 71,513 to 73,819 _00390 Position (kb) 70 71Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 69.621 kb on + strand, within CSW01_00375at 69.621 kb on + strand, within CSW01_00375at 69.621 kb on + strand, within CSW01_00375at 69.621 kb on + strand, within CSW01_00375at 69.621 kb on + strand, within CSW01_00375at 69.621 kb on + strand, within CSW01_00375at 69.626 kb on + strand, within CSW01_00375at 69.626 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.628 kb on + strand, within CSW01_00375at 69.629 kb on - strand, within CSW01_00375at 69.629 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.636 kb on - strand, within CSW01_00375at 69.704 kb on + strand, within CSW01_00375at 69.712 kb on - strand, within CSW01_00375at 69.712 kb on - strand, within CSW01_00375at 69.724 kb on - strand, within CSW01_00375at 69.724 kb on - strand, within CSW01_00375at 69.724 kb on - strand, within CSW01_00375at 69.733 kb on + strand, within CSW01_00375at 69.733 kb on + strand, within CSW01_00375at 69.733 kb on + strand, within CSW01_00375at 69.741 kb on - strand, within CSW01_00375at 69.764 kb on - strand, within CSW01_00375at 69.769 kb on + strand, within CSW01_00375at 69.817 kb on + strand, within CSW01_00375at 69.817 kb on + strand, within CSW01_00375at 69.817 kb on + strand, within CSW01_00375at 69.834 kb on + strand, within CSW01_00375at 69.834 kb on + strand, within CSW01_00375at 69.835 kb on - strand, within CSW01_00375at 69.838 kb on - strand, within CSW01_00375at 69.855 kb on - strand, within CSW01_00375at 69.862 kb on + strand, within CSW01_00375at 69.862 kb on + strand, within CSW01_00375at 69.868 kb on - strand, within CSW01_00375at 69.870 kb on - strand, within CSW01_00375at 69.894 kb on + strand, within CSW01_00375at 69.895 kb on + strand, within CSW01_00375at 69.895 kb on + strand, within CSW01_00375at 69.896 kb on + strand, within CSW01_00375at 69.902 kb on + strand, within CSW01_00375at 69.903 kb on - strand, within CSW01_00375at 69.903 kb on - strand, within CSW01_00375at 70.024 kb on + strand, within CSW01_00375at 70.024 kb on + strand, within CSW01_00375at 70.024 kb on + strand, within CSW01_00375at 70.031 kb on + strand, within CSW01_00375at 70.032 kb on - strand, within CSW01_00375at 70.032 kb on - strand, within CSW01_00375at 70.032 kb on - strand, within CSW01_00375at 70.044 kb on - strand, within CSW01_00375at 70.057 kb on + strand, within CSW01_00375at 70.093 kb on + strand, within CSW01_00375at 70.103 kb on + strand, within CSW01_00375at 70.111 kb on - strand, within CSW01_00375at 70.132 kb on - strand, within CSW01_00375at 70.158 kb on + strand, within CSW01_00375at 70.166 kb on - strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.185 kb on - strand, within CSW01_00375at 70.185 kb on - strand, within CSW01_00375at 70.185 kb on - strand, within CSW01_00375at 70.210 kb on - strand, within CSW01_00375at 70.215 kb on - strand, within CSW01_00375at 70.215 kb on - strand, within CSW01_00375at 70.215 kb on - strand, within CSW01_00375at 70.230 kb on + strand, within CSW01_00375at 70.254 kb on + strand, within CSW01_00375at 70.260 kb on + strand, within CSW01_00375at 70.286 kb on - strand, within CSW01_00375at 70.291 kb on - strand, within CSW01_00375at 70.291 kb on - strand, within CSW01_00375at 70.293 kb on - strand, within CSW01_00375at 70.328 kb on + strand, within CSW01_00375at 70.351 kb on + strand, within CSW01_00375at 70.351 kb on + strand, within CSW01_00375at 70.359 kb on - strand, within CSW01_00375at 70.359 kb on - strand, within CSW01_00375at 70.364 kb on + strand, within CSW01_00375at 70.367 kb on - strand, within CSW01_00375at 70.374 kb on + strand, within CSW01_00375at 70.377 kb on - strand, within CSW01_00375at 70.382 kb on + strandat 70.382 kb on - strandat 70.390 kb on - strandat 70.390 kb on - strandat 70.390 kb on - strandat 70.390 kb on - strandat 70.409 kb on - strandat 70.486 kb on - strandat 70.528 kb on + strandat 70.528 kb on + strandat 70.528 kb on + strandat 70.528 kb on + strandat 70.528 kb on + strandat 70.528 kb on + strandat 70.536 kb on - strandat 70.536 kb on - strandat 70.536 kb on - strandat 70.554 kb on - strandat 70.576 kb on + strandat 70.576 kb on + strandat 70.591 kb on + strandat 70.605 kb on + strandat 70.771 kb on - strand, within CSW01_00380at 70.799 kb on + strand, within CSW01_00380at 70.850 kb on + strand, within CSW01_00380at 70.894 kb on - strandat 70.944 kb on + strandat 70.945 kb on + strandat 70.965 kb on + strandat 70.973 kb on - strandat 70.973 kb on - strandat 70.975 kb on - strandat 70.980 kb on + strandat 70.981 kb on - strandat 70.988 kb on - strandat 70.994 kb on + strandat 70.995 kb on - strandat 70.995 kb on - strandat 70.995 kb on - strandat 71.030 kb on + strand, within CSW01_00385at 71.117 kb on + strand, within CSW01_00385at 71.132 kb on + strand, within CSW01_00385at 71.132 kb on + strand, within CSW01_00385at 71.140 kb on - strand, within CSW01_00385at 71.150 kb on - strand, within CSW01_00385at 71.150 kb on - strand, within CSW01_00385at 71.241 kb on - strand, within CSW01_00385at 71.241 kb on - strand, within CSW01_00385at 71.273 kb on + strand, within CSW01_00385at 71.274 kb on - strand, within CSW01_00385at 71.281 kb on - strand, within CSW01_00385at 71.292 kb on + strand, within CSW01_00385at 71.342 kb on + strand, within CSW01_00385at 71.342 kb on - strand, within CSW01_00385at 71.413 kb on - strandat 71.430 kb on - strandat 71.500 kb on - strandat 71.548 kb on - strandat 71.556 kb on - strandat 71.563 kb on + strandat 71.573 kb on + strandat 71.586 kb on + strandat 71.587 kb on + strandat 71.594 kb on - strandat 71.636 kb on + strandat 71.636 kb on + strandat 71.636 kb on + strandat 71.644 kb on - strandat 71.644 kb on - strandat 71.703 kb on + strandat 71.737 kb on + strandat 71.737 kb on + strandat 71.737 kb on + strandat 71.737 kb on + strandat 71.737 kb on + strandat 71.737 kb on - strandat 71.737 kb on - strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.745 kb on - strand, within CSW01_00390at 71.745 kb on - strand, within CSW01_00390at 71.745 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.771 kb on - strand, within CSW01_00390at 71.773 kb on - strand, within CSW01_00390at 71.773 kb on - strand, within CSW01_00390at 71.825 kb on - strand, within CSW01_00390at 71.825 kb on - strand, within CSW01_00390at 71.830 kb on - strand, within CSW01_00390at 71.830 kb on - strand, within CSW01_00390at 71.875 kb on + strand, within CSW01_00390at 71.883 kb on - strand, within CSW01_00390

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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69,621 + CSW01_00375 0.27 +0.1
69,621 + CSW01_00375 0.27 -0.9
69,621 + CSW01_00375 0.27 -2.4
69,621 + CSW01_00375 0.27 -2.0
69,621 + CSW01_00375 0.27 +0.0
69,621 + CSW01_00375 0.27 -1.9
69,626 + CSW01_00375 0.27 -1.5
69,626 + CSW01_00375 0.27 -4.0
69,628 + CSW01_00375 0.28 -0.8
69,628 + CSW01_00375 0.28 +1.6
69,628 + CSW01_00375 0.28 -0.7
69,628 + CSW01_00375 0.28 +0.3
69,628 + CSW01_00375 0.28 +0.2
69,628 + CSW01_00375 0.28 +0.4
69,628 + CSW01_00375 0.28 -1.0
69,628 + CSW01_00375 0.28 -1.1
69,628 + CSW01_00375 0.28 +0.0
69,628 + CSW01_00375 0.28 -0.4
69,628 + CSW01_00375 0.28 +1.4
69,628 + CSW01_00375 0.28 -2.7
69,628 + CSW01_00375 0.28 -1.5
69,628 + CSW01_00375 0.28 -2.7
69,628 + CSW01_00375 0.28 +1.7
69,628 + CSW01_00375 0.28 -3.4
69,628 + CSW01_00375 0.28 -0.0
69,628 + CSW01_00375 0.28 -0.2
69,628 + CSW01_00375 0.28 +1.1
69,628 + CSW01_00375 0.28 +1.2
69,628 + CSW01_00375 0.28 +0.7
69,628 + CSW01_00375 0.28 +0.0
69,629 - CSW01_00375 0.28 +1.9
69,629 - CSW01_00375 0.28 +0.5
69,636 - CSW01_00375 0.28 -0.7
69,636 - CSW01_00375 0.28 +0.9
69,636 - CSW01_00375 0.28 +0.2
69,636 - CSW01_00375 0.28 +0.9
69,636 - CSW01_00375 0.28 +0.6
69,636 - CSW01_00375 0.28 +1.1
69,636 - CSW01_00375 0.28 -3.4
69,636 - CSW01_00375 0.28 -2.5
69,636 - CSW01_00375 0.28 -0.2
69,636 - CSW01_00375 0.28 -3.6
69,636 - CSW01_00375 0.28 -5.4
69,636 - CSW01_00375 0.28 +1.0
69,636 - CSW01_00375 0.28 -2.6
69,636 - CSW01_00375 0.28 +0.2
69,636 - CSW01_00375 0.28 +0.4
69,636 - CSW01_00375 0.28 +0.5
69,636 - CSW01_00375 0.28 +0.6
69,636 - CSW01_00375 0.28 +0.4
69,704 + CSW01_00375 0.34 -3.7
69,712 - CSW01_00375 0.34 -1.7
69,712 - CSW01_00375 0.34 +0.1
69,724 - CSW01_00375 0.35 +0.1
69,724 - CSW01_00375 0.35 -2.8
69,724 - CSW01_00375 0.35 +0.6
69,733 + CSW01_00375 0.36 -4.2
69,733 + CSW01_00375 0.36 -0.4
69,733 + CSW01_00375 0.36 +1.8
69,741 - CSW01_00375 0.37 -3.1
69,764 - CSW01_00375 0.39 +0.4
69,769 + CSW01_00375 0.39 +0.9
69,817 + CSW01_00375 0.43 -1.4
69,817 + CSW01_00375 0.43 +0.8
69,817 + CSW01_00375 0.43 +0.4
69,834 + CSW01_00375 0.45 +0.1
69,834 + CSW01_00375 0.45 +0.1
69,835 - CSW01_00375 0.45 +0.8
69,838 - CSW01_00375 0.45 +0.6
69,855 - CSW01_00375 0.46 +0.8
69,862 + CSW01_00375 0.47 -0.9
69,862 + CSW01_00375 0.47 +1.4
69,868 - CSW01_00375 0.47 +0.5
69,870 - CSW01_00375 0.48 +1.0
69,894 + CSW01_00375 0.50 +1.0
69,895 + CSW01_00375 0.50 +1.1
69,895 + CSW01_00375 0.50 -1.2
69,896 + CSW01_00375 0.50 -0.0
69,902 + CSW01_00375 0.50 +0.3
69,903 - CSW01_00375 0.50 -1.3
69,903 - CSW01_00375 0.50 +0.1
70,024 + CSW01_00375 0.60 -1.3
70,024 + CSW01_00375 0.60 +0.8
70,024 + CSW01_00375 0.60 +0.6
70,031 + CSW01_00375 0.61 +0.5
70,032 - CSW01_00375 0.61 +0.8
70,032 - CSW01_00375 0.61 +1.6
70,032 - CSW01_00375 0.61 -1.7
70,044 - CSW01_00375 0.62 +0.4
70,057 + CSW01_00375 0.63 -0.2
70,093 + CSW01_00375 0.66 -0.5
70,103 + CSW01_00375 0.67 -0.3
70,111 - CSW01_00375 0.68 +0.3
70,132 - CSW01_00375 0.69 -3.7
70,158 + CSW01_00375 0.72 +1.6
70,166 - CSW01_00375 0.72 -1.9
70,177 + CSW01_00375 0.73 -2.6
70,177 + CSW01_00375 0.73 +0.5
70,177 + CSW01_00375 0.73 +1.3
70,177 + CSW01_00375 0.73 +0.8
70,177 + CSW01_00375 0.73 -4.0
70,177 + CSW01_00375 0.73 +0.6
70,177 + CSW01_00375 0.73 -1.0
70,185 - CSW01_00375 0.74 +0.7
70,185 - CSW01_00375 0.74 -0.3
70,185 - CSW01_00375 0.74 +0.3
70,210 - CSW01_00375 0.76 +1.3
70,215 - CSW01_00375 0.76 +0.8
70,215 - CSW01_00375 0.76 -2.5
70,215 - CSW01_00375 0.76 -0.7
70,230 + CSW01_00375 0.78 +0.4
70,254 + CSW01_00375 0.80 -5.2
70,260 + CSW01_00375 0.80 -0.2
70,286 - CSW01_00375 0.82 -3.6
70,291 - CSW01_00375 0.83 +0.5
70,291 - CSW01_00375 0.83 -0.3
70,293 - CSW01_00375 0.83 -2.7
70,328 + CSW01_00375 0.86 +1.1
70,351 + CSW01_00375 0.88 -0.8
70,351 + CSW01_00375 0.88 -0.3
70,359 - CSW01_00375 0.88 +1.0
70,359 - CSW01_00375 0.88 +2.0
70,364 + CSW01_00375 0.89 +0.8
70,367 - CSW01_00375 0.89 +0.0
70,374 + CSW01_00375 0.90 -0.0
70,377 - CSW01_00375 0.90 +0.7
70,382 + +0.6
70,382 - -0.1
70,390 - -2.9
70,390 - -3.4
70,390 - -1.7
70,390 - +0.8
70,409 - -2.6
70,486 - +1.6
70,528 + +0.2
70,528 + +0.3
70,528 + -0.9
70,528 + +1.2
70,528 + -0.8
70,528 + -0.2
70,536 - -1.7
70,536 - -2.0
70,536 - -0.4
70,554 - -1.9
70,576 + -2.9
70,576 + -0.8
70,591 + +0.1
70,605 + +2.4
70,771 - CSW01_00380 0.59 +0.1
70,799 + CSW01_00380 0.69 -3.4
70,850 + CSW01_00380 0.87 -2.8
70,894 - +0.5
70,944 + -4.2
70,945 + +1.2
70,965 + -0.7
70,973 - -1.3
70,973 - -3.0
70,975 - -2.7
70,980 + +0.2
70,981 - -1.5
70,988 - -1.5
70,994 + +1.4
70,995 - -4.1
70,995 - +1.2
70,995 - -0.9
71,030 + CSW01_00385 0.12 -3.2
71,117 + CSW01_00385 0.31 -1.7
71,132 + CSW01_00385 0.34 -2.0
71,132 + CSW01_00385 0.34 -0.7
71,140 - CSW01_00385 0.35 +0.6
71,150 - CSW01_00385 0.38 -2.0
71,150 - CSW01_00385 0.38 +0.9
71,241 - CSW01_00385 0.57 +1.1
71,241 - CSW01_00385 0.57 +0.3
71,273 + CSW01_00385 0.64 -0.1
71,274 - CSW01_00385 0.65 -1.3
71,281 - CSW01_00385 0.66 +0.6
71,292 + CSW01_00385 0.68 +1.3
71,342 + CSW01_00385 0.79 -0.1
71,342 - CSW01_00385 0.79 +0.3
71,413 - -0.6
71,430 - -0.1
71,500 - +2.2
71,548 - -2.1
71,556 - +1.3
71,563 + -0.8
71,573 + -1.5
71,586 + +0.2
71,587 + -3.0
71,594 - +1.7
71,636 + +0.1
71,636 + -0.4
71,636 + -1.9
71,644 - -1.9
71,644 - -0.5
71,703 + -2.8
71,737 + -0.0
71,737 + +0.7
71,737 + +0.8
71,737 + -3.9
71,737 + +0.7
71,737 - +2.5
71,737 - -4.6
71,739 + +2.4
71,739 + -1.8
71,739 + +0.3
71,739 + -3.3
71,739 + +0.8
71,739 + +1.7
71,739 + -0.1
71,739 + -0.8
71,739 + +0.0
71,745 - CSW01_00390 0.10 +0.4
71,745 - CSW01_00390 0.10 -1.0
71,745 - CSW01_00390 0.10 -0.7
71,747 - CSW01_00390 0.10 +0.6
71,747 - CSW01_00390 0.10 +0.3
71,747 - CSW01_00390 0.10 +0.2
71,747 - CSW01_00390 0.10 +0.3
71,747 - CSW01_00390 0.10 -1.9
71,747 - CSW01_00390 0.10 -1.5
71,747 - CSW01_00390 0.10 -3.6
71,747 - CSW01_00390 0.10 +2.4
71,747 - CSW01_00390 0.10 +0.8
71,771 - CSW01_00390 0.11 -0.4
71,773 - CSW01_00390 0.11 +1.6
71,773 - CSW01_00390 0.11 -4.4
71,825 - CSW01_00390 0.14 -2.2
71,825 - CSW01_00390 0.14 -0.9
71,830 - CSW01_00390 0.14 -4.0
71,830 - CSW01_00390 0.14 -2.7
71,875 + CSW01_00390 0.16 +0.2
71,883 - CSW01_00390 0.16 +0.4

Or see this region's nucleotide sequence