Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00180

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00175 and CSW01_00180 are separated by 47 nucleotidesCSW01_00180 and CSW01_00185 are separated by 291 nucleotidesCSW01_00185 and CSW01_00190 overlap by 55 nucleotidesCSW01_00190 and CSW01_00195 are separated by 108 nucleotides CSW01_00175: CSW01_00175 - serine/threonine protein kinase, at 33,277 to 34,263 _00175 CSW01_00180: CSW01_00180 - cytochrome c oxidase accessory protein CcoG, at 34,311 to 35,735 _00180 CSW01_00185: CSW01_00185 - hypothetical protein, at 36,027 to 36,206 _00185 CSW01_00190: CSW01_00190 - DUF1040 domain-containing protein, at 36,152 to 36,418 _00190 CSW01_00195: CSW01_00195 - hypothetical protein, at 36,527 to 36,694 _00195 Position (kb) 34 35 36Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 33.317 kb on + strandat 33.330 kb on + strandat 33.330 kb on - strandat 33.405 kb on - strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.488 kb on - strand, within CSW01_00175at 33.501 kb on + strand, within CSW01_00175at 33.587 kb on + strand, within CSW01_00175at 33.676 kb on + strand, within CSW01_00175at 33.684 kb on - strand, within CSW01_00175at 33.703 kb on - strand, within CSW01_00175at 33.703 kb on - strand, within CSW01_00175at 33.772 kb on - strand, within CSW01_00175at 33.776 kb on + strand, within CSW01_00175at 33.808 kb on + strand, within CSW01_00175at 33.844 kb on + strand, within CSW01_00175at 33.844 kb on + strand, within CSW01_00175at 33.844 kb on + strand, within CSW01_00175at 33.895 kb on + strand, within CSW01_00175at 33.895 kb on + strand, within CSW01_00175at 33.903 kb on - strand, within CSW01_00175at 33.903 kb on - strand, within CSW01_00175at 33.903 kb on - strand, within CSW01_00175at 33.941 kb on + strand, within CSW01_00175at 33.951 kb on + strand, within CSW01_00175at 33.975 kb on + strand, within CSW01_00175at 33.976 kb on + strand, within CSW01_00175at 33.976 kb on + strand, within CSW01_00175at 33.983 kb on - strand, within CSW01_00175at 33.984 kb on - strand, within CSW01_00175at 33.984 kb on - strand, within CSW01_00175at 33.989 kb on - strand, within CSW01_00175at 33.997 kb on - strand, within CSW01_00175at 34.023 kb on + strand, within CSW01_00175at 34.029 kb on - strand, within CSW01_00175at 34.048 kb on + strand, within CSW01_00175at 34.056 kb on - strand, within CSW01_00175at 34.058 kb on + strand, within CSW01_00175at 34.066 kb on - strand, within CSW01_00175at 34.066 kb on - strand, within CSW01_00175at 34.083 kb on - strand, within CSW01_00175at 34.084 kb on - strand, within CSW01_00175at 34.084 kb on - strand, within CSW01_00175at 34.130 kb on - strand, within CSW01_00175at 34.182 kb on - strandat 34.257 kb on + strandat 34.296 kb on - strandat 34.308 kb on + strandat 34.354 kb on - strandat 34.373 kb on + strandat 34.373 kb on + strandat 34.440 kb on + strandat 34.517 kb on + strand, within CSW01_00180at 34.517 kb on + strand, within CSW01_00180at 34.525 kb on - strand, within CSW01_00180at 34.525 kb on - strand, within CSW01_00180at 34.533 kb on - strand, within CSW01_00180at 34.594 kb on + strand, within CSW01_00180at 34.612 kb on - strand, within CSW01_00180at 34.626 kb on + strand, within CSW01_00180at 34.702 kb on - strand, within CSW01_00180at 34.702 kb on - strand, within CSW01_00180at 34.751 kb on + strand, within CSW01_00180at 34.751 kb on + strand, within CSW01_00180at 34.751 kb on + strand, within CSW01_00180at 34.759 kb on - strand, within CSW01_00180at 34.767 kb on + strand, within CSW01_00180at 34.785 kb on + strand, within CSW01_00180at 34.785 kb on + strand, within CSW01_00180at 34.793 kb on - strand, within CSW01_00180at 34.814 kb on + strand, within CSW01_00180at 34.822 kb on - strand, within CSW01_00180at 34.822 kb on - strand, within CSW01_00180at 34.850 kb on - strand, within CSW01_00180at 34.884 kb on + strand, within CSW01_00180at 34.892 kb on - strand, within CSW01_00180at 34.916 kb on + strand, within CSW01_00180at 34.916 kb on + strand, within CSW01_00180at 34.916 kb on + strand, within CSW01_00180at 34.924 kb on - strand, within CSW01_00180at 34.963 kb on + strand, within CSW01_00180at 35.001 kb on + strand, within CSW01_00180at 35.013 kb on + strand, within CSW01_00180at 35.031 kb on - strand, within CSW01_00180at 35.046 kb on + strand, within CSW01_00180at 35.046 kb on + strand, within CSW01_00180at 35.054 kb on - strand, within CSW01_00180at 35.070 kb on + strand, within CSW01_00180at 35.070 kb on + strand, within CSW01_00180at 35.074 kb on - strand, within CSW01_00180at 35.078 kb on - strand, within CSW01_00180at 35.088 kb on - strand, within CSW01_00180at 35.088 kb on - strand, within CSW01_00180at 35.125 kb on + strand, within CSW01_00180at 35.162 kb on + strand, within CSW01_00180at 35.244 kb on + strand, within CSW01_00180at 35.245 kb on - strand, within CSW01_00180at 35.245 kb on - strand, within CSW01_00180at 35.245 kb on - strand, within CSW01_00180at 35.245 kb on - strand, within CSW01_00180at 35.280 kb on + strand, within CSW01_00180at 35.367 kb on + strand, within CSW01_00180at 35.367 kb on + strand, within CSW01_00180at 35.367 kb on + strand, within CSW01_00180at 35.367 kb on + strand, within CSW01_00180at 35.387 kb on + strand, within CSW01_00180at 35.409 kb on + strand, within CSW01_00180at 35.414 kb on + strand, within CSW01_00180at 35.459 kb on - strand, within CSW01_00180at 35.459 kb on - strand, within CSW01_00180at 35.459 kb on - strand, within CSW01_00180at 35.460 kb on - strand, within CSW01_00180at 35.469 kb on + strand, within CSW01_00180at 35.528 kb on - strand, within CSW01_00180at 35.570 kb on + strand, within CSW01_00180at 35.592 kb on - strand, within CSW01_00180at 35.653 kb on - strandat 35.661 kb on + strandat 35.669 kb on - strandat 35.677 kb on - strandat 35.679 kb on - strandat 35.683 kb on + strandat 35.727 kb on - strandat 35.727 kb on - strandat 35.739 kb on - strandat 35.812 kb on - strandat 35.858 kb on - strandat 35.892 kb on - strandat 35.935 kb on - strandat 35.935 kb on - strandat 35.980 kb on + strandat 35.980 kb on + strandat 35.980 kb on + strandat 35.988 kb on - strandat 35.988 kb on - strandat 35.990 kb on + strandat 35.996 kb on + strandat 35.996 kb on + strandat 35.996 kb on + strandat 35.996 kb on + strandat 36.004 kb on - strandat 36.005 kb on - strandat 36.019 kb on - strandat 36.227 kb on - strand, within CSW01_00190at 36.245 kb on + strand, within CSW01_00190at 36.245 kb on + strand, within CSW01_00190at 36.261 kb on - strand, within CSW01_00190at 36.289 kb on - strand, within CSW01_00190at 36.306 kb on - strand, within CSW01_00190at 36.308 kb on - strand, within CSW01_00190at 36.343 kb on - strand, within CSW01_00190at 36.383 kb on - strand, within CSW01_00190at 36.383 kb on - strand, within CSW01_00190at 36.472 kb on + strandat 36.472 kb on + strandat 36.477 kb on + strandat 36.542 kb on - strandat 36.576 kb on + strand, within CSW01_00195at 36.659 kb on - strand, within CSW01_00195at 36.659 kb on - strand, within CSW01_00195at 36.659 kb on - strand, within CSW01_00195at 36.701 kb on + strandat 36.704 kb on - strandat 36.721 kb on - strandat 36.721 kb on - strandat 36.721 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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33,317 + -1.3
33,330 + +0.6
33,330 - +1.3
33,405 - CSW01_00175 0.13 -1.3
33,433 + CSW01_00175 0.16 -0.3
33,433 + CSW01_00175 0.16 +1.1
33,433 + CSW01_00175 0.16 +1.4
33,433 + CSW01_00175 0.16 +0.0
33,488 - CSW01_00175 0.21 -5.0
33,501 + CSW01_00175 0.23 +0.5
33,587 + CSW01_00175 0.31 +0.4
33,676 + CSW01_00175 0.40 +2.4
33,684 - CSW01_00175 0.41 +1.3
33,703 - CSW01_00175 0.43 +0.3
33,703 - CSW01_00175 0.43 -1.2
33,772 - CSW01_00175 0.50 -0.0
33,776 + CSW01_00175 0.51 -3.4
33,808 + CSW01_00175 0.54 +1.8
33,844 + CSW01_00175 0.57 -3.2
33,844 + CSW01_00175 0.57 -2.7
33,844 + CSW01_00175 0.57 +1.0
33,895 + CSW01_00175 0.63 +0.2
33,895 + CSW01_00175 0.63 +1.0
33,903 - CSW01_00175 0.63 -4.2
33,903 - CSW01_00175 0.63 -1.4
33,903 - CSW01_00175 0.63 +1.2
33,941 + CSW01_00175 0.67 -2.4
33,951 + CSW01_00175 0.68 +0.7
33,975 + CSW01_00175 0.71 +1.3
33,976 + CSW01_00175 0.71 +0.5
33,976 + CSW01_00175 0.71 -2.7
33,983 - CSW01_00175 0.72 -1.3
33,984 - CSW01_00175 0.72 +1.3
33,984 - CSW01_00175 0.72 +1.6
33,989 - CSW01_00175 0.72 -1.5
33,997 - CSW01_00175 0.73 +2.2
34,023 + CSW01_00175 0.76 -0.9
34,029 - CSW01_00175 0.76 -3.2
34,048 + CSW01_00175 0.78 +1.0
34,056 - CSW01_00175 0.79 -0.6
34,058 + CSW01_00175 0.79 +0.8
34,066 - CSW01_00175 0.80 -4.9
34,066 - CSW01_00175 0.80 -1.6
34,083 - CSW01_00175 0.82 +1.8
34,084 - CSW01_00175 0.82 +1.1
34,084 - CSW01_00175 0.82 +1.0
34,130 - CSW01_00175 0.86 -0.3
34,182 - +0.5
34,257 + -1.2
34,296 - +0.2
34,308 + -1.4
34,354 - +2.3
34,373 + +0.7
34,373 + +0.8
34,440 + +0.1
34,517 + CSW01_00180 0.14 -3.6
34,517 + CSW01_00180 0.14 +1.0
34,525 - CSW01_00180 0.15 -3.9
34,525 - CSW01_00180 0.15 -3.1
34,533 - CSW01_00180 0.16 +0.8
34,594 + CSW01_00180 0.20 -0.4
34,612 - CSW01_00180 0.21 -0.7
34,626 + CSW01_00180 0.22 -0.9
34,702 - CSW01_00180 0.27 +0.2
34,702 - CSW01_00180 0.27 -3.4
34,751 + CSW01_00180 0.31 -0.3
34,751 + CSW01_00180 0.31 -2.6
34,751 + CSW01_00180 0.31 -2.5
34,759 - CSW01_00180 0.31 -1.5
34,767 + CSW01_00180 0.32 -3.3
34,785 + CSW01_00180 0.33 -3.0
34,785 + CSW01_00180 0.33 -0.5
34,793 - CSW01_00180 0.34 -1.3
34,814 + CSW01_00180 0.35 -1.9
34,822 - CSW01_00180 0.36 -2.5
34,822 - CSW01_00180 0.36 -2.5
34,850 - CSW01_00180 0.38 +0.2
34,884 + CSW01_00180 0.40 -4.3
34,892 - CSW01_00180 0.41 -4.0
34,916 + CSW01_00180 0.42 +0.0
34,916 + CSW01_00180 0.42 -0.5
34,916 + CSW01_00180 0.42 -2.4
34,924 - CSW01_00180 0.43 -3.0
34,963 + CSW01_00180 0.46 +0.2
35,001 + CSW01_00180 0.48 -2.8
35,013 + CSW01_00180 0.49 +0.4
35,031 - CSW01_00180 0.51 -0.1
35,046 + CSW01_00180 0.52 -2.1
35,046 + CSW01_00180 0.52 +0.5
35,054 - CSW01_00180 0.52 -4.7
35,070 + CSW01_00180 0.53 -3.6
35,070 + CSW01_00180 0.53 -2.4
35,074 - CSW01_00180 0.54 -0.7
35,078 - CSW01_00180 0.54 -3.7
35,088 - CSW01_00180 0.55 -2.9
35,088 - CSW01_00180 0.55 +0.0
35,125 + CSW01_00180 0.57 +1.3
35,162 + CSW01_00180 0.60 -0.5
35,244 + CSW01_00180 0.65 +0.1
35,245 - CSW01_00180 0.66 -3.1
35,245 - CSW01_00180 0.66 -2.7
35,245 - CSW01_00180 0.66 -1.7
35,245 - CSW01_00180 0.66 -1.3
35,280 + CSW01_00180 0.68 -0.4
35,367 + CSW01_00180 0.74 +0.8
35,367 + CSW01_00180 0.74 -2.3
35,367 + CSW01_00180 0.74 -2.5
35,367 + CSW01_00180 0.74 -0.8
35,387 + CSW01_00180 0.76 +0.2
35,409 + CSW01_00180 0.77 -2.0
35,414 + CSW01_00180 0.77 -2.0
35,459 - CSW01_00180 0.81 +0.0
35,459 - CSW01_00180 0.81 -3.5
35,459 - CSW01_00180 0.81 -3.4
35,460 - CSW01_00180 0.81 -3.0
35,469 + CSW01_00180 0.81 -2.8
35,528 - CSW01_00180 0.85 -3.1
35,570 + CSW01_00180 0.88 -0.5
35,592 - CSW01_00180 0.90 +0.1
35,653 - -0.0
35,661 + -3.7
35,669 - -3.7
35,677 - -2.8
35,679 - +0.1
35,683 + -0.6
35,727 - +0.0
35,727 - -3.6
35,739 - -0.4
35,812 - +1.3
35,858 - +0.9
35,892 - -1.2
35,935 - -1.1
35,935 - -5.0
35,980 + -4.2
35,980 + -0.9
35,980 + -0.4
35,988 - -0.2
35,988 - +0.2
35,990 + +1.8
35,996 + -1.9
35,996 + -0.9
35,996 + -3.4
35,996 + +1.1
36,004 - -0.9
36,005 - -0.9
36,019 - +0.4
36,227 - CSW01_00190 0.28 -2.2
36,245 + CSW01_00190 0.35 -0.6
36,245 + CSW01_00190 0.35 +0.7
36,261 - CSW01_00190 0.41 -3.9
36,289 - CSW01_00190 0.51 +1.2
36,306 - CSW01_00190 0.58 -3.0
36,308 - CSW01_00190 0.58 +0.0
36,343 - CSW01_00190 0.72 -0.2
36,383 - CSW01_00190 0.87 +1.4
36,383 - CSW01_00190 0.87 -0.2
36,472 + +0.1
36,472 + -0.1
36,477 + +1.7
36,542 - -1.9
36,576 + CSW01_00195 0.29 -0.1
36,659 - CSW01_00195 0.79 -1.6
36,659 - CSW01_00195 0.79 -0.1
36,659 - CSW01_00195 0.79 +1.0
36,701 + -0.3
36,704 - -2.5
36,721 - -0.6
36,721 - -0.8
36,721 - -0.8

Or see this region's nucleotide sequence