Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00160

Experiment: ICP3_phage_4.1_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_4.1_MOI_rep2
29,095	+		CSW01_00155	0.73	+0.2
29,107	+		CSW01_00155	0.74	-1.3
29,107	+		CSW01_00155	0.74	+0.2
29,164	+		CSW01_00155	0.77	-0.5
29,169	-		CSW01_00155	0.78	-1.9
29,171	+		CSW01_00155	0.78	+1.0
29,171	+		CSW01_00155	0.78	+0.1
29,171	+		CSW01_00155	0.78	-4.1
29,171	+		CSW01_00155	0.78	+0.2
29,171	+		CSW01_00155	0.78	-0.4
29,179	-		CSW01_00155	0.78	-0.7
29,179	-		CSW01_00155	0.78	-3.4
29,179	-		CSW01_00155	0.78	-1.4
29,179	-		CSW01_00155	0.78	-3.9
29,179	-		CSW01_00155	0.78	+0.5
29,199	-		CSW01_00155	0.80	-0.6
29,204	-		CSW01_00155	0.80	-1.5
29,204	-		CSW01_00155	0.80	+0.2
29,226	+		CSW01_00155	0.81	-3.3
29,239	-		CSW01_00155	0.82	+0.2
29,287	+		CSW01_00155	0.85	+0.7
29,295	-		CSW01_00155	0.85	-0.1
29,327	-		CSW01_00155	0.87	-0.7
29,327	-		CSW01_00155	0.87	+0.1
29,348	-		CSW01_00155	0.89	+0.0
29,390	-				-3.0
29,391	-				+1.3
29,398	-				-3.4
29,413	+				+3.3
29,415	+				-0.9
29,421	-				-3.1
29,423	-				-0.5
29,426	+				-0.2
29,426	+				+0.0
29,426	+				-3.9
29,426	+				+0.5
29,426	+				+0.3
29,426	+				-2.5
29,426	+				-3.4
29,426	+				+2.4
29,434	-				+0.4
29,434	-				-2.2
29,434	-				-2.4
29,434	-				+0.4
29,434	-				-3.1
29,436	-				-3.0
29,441	+				+1.6
29,462	+				+0.5
29,515	+				+1.0
29,515	+				-0.3
29,523	+				+0.1
29,523	+				+0.2
29,528	-				-0.5
29,538	-				+0.3
29,568	+				+0.8
29,642	+				+0.8
29,642	+				-2.7
29,647	+				-3.5
29,647	+				+0.7
29,647	+				-0.3
29,650	-				+2.7
29,650	-				-0.3
29,650	-				-3.5
29,655	-				-0.2
29,673	+				+0.7
29,674	+				-2.2
29,674	+				+0.8
29,682	-				+0.2
29,682	-				+0.6
29,682	-				-3.1
29,682	-				+0.8
29,682	-				+0.8
29,842	-				+1.2
29,993	+				-4.0
30,001	-				+0.3
30,001	-				-4.0
30,100	+				-1.9
30,100	+				+1.0
30,108	-				+0.6
30,127	+				-3.8
30,127	+				+0.5
30,135	+				-3.6
30,135	-				-2.4
30,135	-				+1.1
30,143	-				+2.4
30,143	-				-2.6
30,144	+				-0.5
30,159	+				-2.3
30,167	-				-1.9
30,198	-				+0.6
30,215	+				+2.0
30,457	+		CSW01_00160	0.25	-0.3
30,462	+		CSW01_00160	0.26	+1.7
30,462	+		CSW01_00160	0.26	+1.2
30,472	+		CSW01_00160	0.26	+1.0
30,472	+		CSW01_00160	0.26	-0.0
30,472	+		CSW01_00160	0.26	+0.6
30,472	+		CSW01_00160	0.26	-3.5
30,472	+		CSW01_00160	0.26	-0.6
30,478	-		CSW01_00160	0.27	+0.4
30,480	-		CSW01_00160	0.27	-4.2
30,488	+		CSW01_00160	0.27	+0.4
30,488	+		CSW01_00160	0.27	-1.2
30,488	+		CSW01_00160	0.27	+0.9
30,488	+		CSW01_00160	0.27	-3.5
30,488	+		CSW01_00160	0.27	-2.7
30,507	+		CSW01_00160	0.29	+0.3
30,517	+		CSW01_00160	0.29	-0.5
30,520	-		CSW01_00160	0.30	+1.0
30,525	-		CSW01_00160	0.30	+0.2
30,525	-		CSW01_00160	0.30	-0.4
30,525	-		CSW01_00160	0.30	-5.4
30,525	-		CSW01_00160	0.30	+1.1
30,527	+		CSW01_00160	0.30	+1.1
30,527	+		CSW01_00160	0.30	+1.5
30,535	-		CSW01_00160	0.31	-1.0
30,537	+		CSW01_00160	0.31	+0.6
30,537	+		CSW01_00160	0.31	+0.3
30,545	-		CSW01_00160	0.31	-0.2
30,545	-		CSW01_00160	0.31	+2.4
30,545	-		CSW01_00160	0.31	-1.0
30,564	+		CSW01_00160	0.32	+0.3
30,566	+		CSW01_00160	0.33	+1.2
30,566	+		CSW01_00160	0.33	-3.8
30,566	+		CSW01_00160	0.33	-3.7
30,572	-		CSW01_00160	0.33	+0.6
30,574	-		CSW01_00160	0.33	+0.7
30,610	+		CSW01_00160	0.35	+0.6
30,618	-		CSW01_00160	0.36	+1.6
30,618	-		CSW01_00160	0.36	+1.1
30,619	+		CSW01_00160	0.36	+3.4
30,624	+		CSW01_00160	0.36	-0.5
30,627	-		CSW01_00160	0.37	+3.9
30,655	-		CSW01_00160	0.38	+0.1
30,655	-		CSW01_00160	0.38	-0.1
30,751	+		CSW01_00160	0.45	-0.6
30,751	+		CSW01_00160	0.45	+1.8
30,751	+		CSW01_00160	0.45	-2.9
30,751	+		CSW01_00160	0.45	-3.5
30,751	+		CSW01_00160	0.45	+1.3
30,751	+		CSW01_00160	0.45	-1.0
30,751	+		CSW01_00160	0.45	+0.1
30,751	+		CSW01_00160	0.45	+1.4
30,751	+		CSW01_00160	0.45	-0.7
30,759	-		CSW01_00160	0.45	+0.8
30,759	-		CSW01_00160	0.45	+0.5
30,759	-		CSW01_00160	0.45	-1.0
30,759	-		CSW01_00160	0.45	+0.4
30,759	-		CSW01_00160	0.45	+0.6
30,759	-		CSW01_00160	0.45	-0.1
30,759	-		CSW01_00160	0.45	+0.7
30,759	-		CSW01_00160	0.45	-3.0
30,759	-		CSW01_00160	0.45	-2.0
30,759	-		CSW01_00160	0.45	-1.0
30,759	-		CSW01_00160	0.45	+0.2
30,759	-		CSW01_00160	0.45	+0.5
30,759	-		CSW01_00160	0.45	+0.1
30,764	-		CSW01_00160	0.46	-0.2
30,820	+		CSW01_00160	0.49	+0.3
30,820	+		CSW01_00160	0.49	-2.6
30,820	+		CSW01_00160	0.49	-1.6
30,828	-		CSW01_00160	0.50	-4.3
30,830	+		CSW01_00160	0.50	-0.2
30,835	+		CSW01_00160	0.50	+2.1
30,911	+		CSW01_00160	0.55	-1.2
30,916	+		CSW01_00160	0.56	+0.2
31,067	-		CSW01_00160	0.65	+0.7
31,133	-		CSW01_00160	0.70	-2.1
31,134	+		CSW01_00160	0.70	-0.5
31,135	+		CSW01_00160	0.70	+0.5
31,179	-		CSW01_00160	0.73	+1.2
31,202	-		CSW01_00160	0.74	+0.7
31,243	-		CSW01_00160	0.77	-0.8
31,243	-		CSW01_00160	0.77	+0.8
31,243	-		CSW01_00160	0.77	-1.2
31,250	+		CSW01_00160	0.77	-2.5
31,298	+		CSW01_00160	0.81	-0.5
31,304	+		CSW01_00160	0.81	+0.4
31,306	-		CSW01_00160	0.81	-0.7
31,306	-		CSW01_00160	0.81	-2.4
31,306	-		CSW01_00160	0.81	-5.0
31,334	+		CSW01_00160	0.83	+1.3
31,348	-		CSW01_00160	0.84	-3.2
31,376	+		CSW01_00160	0.86	-0.1
31,376	+		CSW01_00160	0.86	+1.2
31,376	+		CSW01_00160	0.86	+0.4
31,376	+		CSW01_00160	0.86	-3.4
31,376	+		CSW01_00160	0.86	+0.1
31,384	-		CSW01_00160	0.86	-0.2
31,384	-		CSW01_00160	0.86	+1.3
31,384	-		CSW01_00160	0.86	+1.2
31,388	+		CSW01_00160	0.87	+0.5
31,463	+				+0.8
31,506	-				+0.0
31,506	-				-1.7
31,533	+				+1.3
31,579	-				-0.2
31,587	+				-0.2
31,593	-				+0.1
31,594	+				+2.1
31,594	+				+0.2
31,594	+				-3.2
31,594	+				-1.2
31,595	-				+0.2
31,595	-				+1.0
31,597	-				+1.6
31,602	-				+0.4
31,602	-				+0.7
31,602	-				-2.2
31,602	-				+0.3
31,607	-				-1.2
31,607	-				-4.3
31,617	-				+1.3
31,665	+				+0.0
31,665	+				-2.9
31,673	-				+0.5
31,705	-				+1.5
31,708	+				-2.0
31,712	-				-0.9
31,716	-				+0.3
31,779	-		CSW01_00165	0.11	+0.0
31,786	+		CSW01_00165	0.12	+0.5
31,786	+		CSW01_00165	0.12	+0.8
31,794	-		CSW01_00165	0.13	-0.3
31,805	+		CSW01_00165	0.14	-0.7
31,813	-		CSW01_00165	0.15	-2.2
31,847	-		CSW01_00165	0.19	-0.1
31,847	-		CSW01_00165	0.19	-0.3
31,858	+		CSW01_00165	0.20	+1.6
31,908	+		CSW01_00165	0.26	-1.0
31,916	-		CSW01_00165	0.26	+0.5
31,916	-		CSW01_00165	0.26	-1.3
31,925	-		CSW01_00165	0.27	-0.3
31,986	-		CSW01_00165	0.34	-2.3
32,007	-		CSW01_00165	0.37	+1.0
32,057	+		CSW01_00165	0.42	+1.4
32,075	-		CSW01_00165	0.44	+0.3
32,080	-		CSW01_00165	0.45	+0.6
32,117	-		CSW01_00165	0.49	-2.0
32,122	-		CSW01_00165	0.50	+2.5
32,186	+		CSW01_00165	0.57	-2.5
32,186	+		CSW01_00165	0.57	-4.1
32,186	+		CSW01_00165	0.57	-4.0
32,194	-		CSW01_00165	0.58	-2.0
32,206	-		CSW01_00165	0.59	-1.6
32,206	-		CSW01_00165	0.59	-3.3
32,206	-		CSW01_00165	0.59	-0.3
32,206	-		CSW01_00165	0.59	+1.5
32,222	+		CSW01_00165	0.61	+0.5
32,245	+		CSW01_00165	0.64	-0.7
32,286	-		CSW01_00165	0.68	+1.2
32,324	-		CSW01_00165	0.73	+1.8
32,348	+		CSW01_00165	0.75	+0.4
32,358	+		CSW01_00165	0.76	-2.6
32,375	-		CSW01_00165	0.78	-3.7
32,400	+		CSW01_00165	0.81	+0.2
32,400	+		CSW01_00165	0.81	+0.7
32,400	+		CSW01_00165	0.81	-1.0
32,400	+		CSW01_00165	0.81	+0.3
32,400	+		CSW01_00165	0.81	-2.1
32,400	+		CSW01_00165	0.81	+1.4
32,408	-		CSW01_00165	0.82	+0.6
32,408	-		CSW01_00165	0.82	-3.1
32,408	-		CSW01_00165	0.82	-1.8
32,408	-		CSW01_00165	0.82	+1.7
32,408	-		CSW01_00165	0.82	-3.6
32,408	-		CSW01_00165	0.82	-0.7
32,408	-		CSW01_00165	0.82	+0.2
32,417	+		CSW01_00165	0.83	+0.3
32,452	+		CSW01_00165	0.87	-0.1
32,480	-				-0.7
32,490	-				-0.2
32,509	+				+1.5
32,514	+				-3.6
32,514	+				-3.2
32,522	-				+2.4
32,531	+				-0.5
32,531	+				+1.0
32,532	-				-2.6
32,532	-				+1.0
32,592	-				-0.6