Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25570

Experiment: Doxycycline hyclate 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25565 and AO353_25570 are separated by 14 nucleotidesAO353_25570 and AO353_25575 are separated by 42 nucleotidesAO353_25575 and AO353_25580 are separated by 262 nucleotides AO353_25565: AO353_25565 - UDP-glucose 6-dehydrogenase, at 5,638,879 to 5,640,252 _25565 AO353_25570: AO353_25570 - glycosyltransferase, at 5,640,267 to 5,641,871 _25570 AO353_25575: AO353_25575 - GNAT family acetyltransferase, at 5,641,914 to 5,642,435 _25575 AO353_25580: AO353_25580 - LysR family transcriptional regulator, at 5,642,698 to 5,643,663 _25580 Position (kb) 5640 5641 5642Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5640.250 kb on + strandat 5640.251 kb on - strandat 5640.251 kb on - strandat 5640.307 kb on + strandat 5640.351 kb on + strandat 5640.352 kb on - strandat 5640.352 kb on - strandat 5640.388 kb on + strandat 5640.388 kb on + strandat 5640.441 kb on + strand, within AO353_25570at 5640.441 kb on + strand, within AO353_25570at 5640.441 kb on + strand, within AO353_25570at 5640.441 kb on + strand, within AO353_25570at 5640.442 kb on - strand, within AO353_25570at 5640.453 kb on + strand, within AO353_25570at 5640.454 kb on - strand, within AO353_25570at 5640.462 kb on + strand, within AO353_25570at 5640.462 kb on + strand, within AO353_25570at 5640.486 kb on - strand, within AO353_25570at 5640.518 kb on - strand, within AO353_25570at 5640.518 kb on - strand, within AO353_25570at 5640.518 kb on - strand, within AO353_25570at 5640.518 kb on - strand, within AO353_25570at 5640.518 kb on - strand, within AO353_25570at 5640.580 kb on - strand, within AO353_25570at 5640.597 kb on + strand, within AO353_25570at 5640.598 kb on - strand, within AO353_25570at 5640.647 kb on + strand, within AO353_25570at 5640.647 kb on + strand, within AO353_25570at 5640.648 kb on - strand, within AO353_25570at 5640.648 kb on - strand, within AO353_25570at 5640.717 kb on + strand, within AO353_25570at 5640.717 kb on + strand, within AO353_25570at 5640.718 kb on - strand, within AO353_25570at 5640.718 kb on - strand, within AO353_25570at 5640.718 kb on - strand, within AO353_25570at 5640.718 kb on - strand, within AO353_25570at 5640.718 kb on - strand, within AO353_25570at 5640.727 kb on - strand, within AO353_25570at 5640.770 kb on - strand, within AO353_25570at 5640.846 kb on + strand, within AO353_25570at 5640.846 kb on + strand, within AO353_25570at 5640.846 kb on + strand, within AO353_25570at 5640.846 kb on + strand, within AO353_25570at 5640.849 kb on + strand, within AO353_25570at 5640.849 kb on + strand, within AO353_25570at 5640.850 kb on - strand, within AO353_25570at 5640.850 kb on - strand, within AO353_25570at 5641.065 kb on + strand, within AO353_25570at 5641.065 kb on + strand, within AO353_25570at 5641.065 kb on + strand, within AO353_25570at 5641.065 kb on + strand, within AO353_25570at 5641.065 kb on + strand, within AO353_25570at 5641.065 kb on + strand, within AO353_25570at 5641.066 kb on - strand, within AO353_25570at 5641.066 kb on - strand, within AO353_25570at 5641.066 kb on - strand, within AO353_25570at 5641.066 kb on - strand, within AO353_25570at 5641.224 kb on + strand, within AO353_25570at 5641.224 kb on + strand, within AO353_25570at 5641.224 kb on + strand, within AO353_25570at 5641.225 kb on - strand, within AO353_25570at 5641.225 kb on - strand, within AO353_25570at 5641.225 kb on - strand, within AO353_25570at 5641.521 kb on + strand, within AO353_25570at 5641.521 kb on + strand, within AO353_25570at 5641.521 kb on + strandat 5641.521 kb on + strand, within AO353_25570at 5641.522 kb on - strand, within AO353_25570at 5641.522 kb on - strand, within AO353_25570at 5641.522 kb on - strand, within AO353_25570at 5641.569 kb on - strand, within AO353_25570at 5641.569 kb on - strand, within AO353_25570at 5641.569 kb on - strand, within AO353_25570at 5641.569 kb on - strand, within AO353_25570at 5641.574 kb on + strand, within AO353_25570at 5641.764 kb on + strandat 5641.836 kb on + strandat 5641.836 kb on + strandat 5641.901 kb on + strandat 5641.902 kb on - strandat 5641.902 kb on - strandat 5642.066 kb on - strand, within AO353_25575at 5642.154 kb on - strand, within AO353_25575at 5642.229 kb on + strand, within AO353_25575at 5642.229 kb on + strand, within AO353_25575at 5642.230 kb on - strand, within AO353_25575at 5642.230 kb on - strand, within AO353_25575at 5642.301 kb on + strand, within AO353_25575at 5642.302 kb on - strand, within AO353_25575at 5642.302 kb on - strand, within AO353_25575at 5642.302 kb on - strandat 5642.379 kb on - strand, within AO353_25575at 5642.418 kb on + strandat 5642.441 kb on - strandat 5642.441 kb on - strandat 5642.441 kb on - strandat 5642.441 kb on - strandat 5642.441 kb on - strandat 5642.445 kb on - strandat 5642.457 kb on + strandat 5642.545 kb on - strandat 5642.572 kb on + strandat 5642.573 kb on - strandat 5642.573 kb on - strandat 5642.594 kb on - strandat 5642.624 kb on - strandat 5642.624 kb on - strandat 5642.626 kb on - strandat 5642.626 kb on - strandat 5642.626 kb on - strandat 5642.626 kb on - strandat 5642.658 kb on + strandat 5642.796 kb on + strand, within AO353_25580at 5642.796 kb on + strand, within AO353_25580at 5642.796 kb on + strand, within AO353_25580at 5642.797 kb on - strand, within AO353_25580at 5642.861 kb on + strand, within AO353_25580at 5642.861 kb on + strand, within AO353_25580at 5642.862 kb on - strand, within AO353_25580at 5642.862 kb on - strand, within AO353_25580

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml
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5,640,250 + +0.2
5,640,251 - -1.8
5,640,251 - -1.0
5,640,307 + -2.4
5,640,351 + -0.8
5,640,352 - +0.2
5,640,352 - -1.0
5,640,388 + -1.4
5,640,388 + -0.4
5,640,441 + AO353_25570 0.11 -1.6
5,640,441 + AO353_25570 0.11 +0.6
5,640,441 + AO353_25570 0.11 -0.3
5,640,441 + AO353_25570 0.11 -2.2
5,640,442 - AO353_25570 0.11 +0.3
5,640,453 + AO353_25570 0.12 -1.3
5,640,454 - AO353_25570 0.12 -0.7
5,640,462 + AO353_25570 0.12 +2.2
5,640,462 + AO353_25570 0.12 -1.0
5,640,486 - AO353_25570 0.14 -2.1
5,640,518 - AO353_25570 0.16 -0.5
5,640,518 - AO353_25570 0.16 -2.2
5,640,518 - AO353_25570 0.16 -2.2
5,640,518 - AO353_25570 0.16 -1.8
5,640,518 - AO353_25570 0.16 -0.4
5,640,580 - AO353_25570 0.20 -1.4
5,640,597 + AO353_25570 0.21 -0.2
5,640,598 - AO353_25570 0.21 -1.4
5,640,647 + AO353_25570 0.24 -0.1
5,640,647 + AO353_25570 0.24 -1.4
5,640,648 - AO353_25570 0.24 -0.8
5,640,648 - AO353_25570 0.24 +1.3
5,640,717 + AO353_25570 0.28 +0.6
5,640,717 + AO353_25570 0.28 -0.2
5,640,718 - AO353_25570 0.28 -2.0
5,640,718 - AO353_25570 0.28 -0.4
5,640,718 - AO353_25570 0.28 -0.8
5,640,718 - AO353_25570 0.28 -1.8
5,640,718 - AO353_25570 0.28 -1.8
5,640,727 - AO353_25570 0.29 -1.2
5,640,770 - AO353_25570 0.31 -0.2
5,640,846 + AO353_25570 0.36 -1.4
5,640,846 + AO353_25570 0.36 -0.8
5,640,846 + AO353_25570 0.36 -0.0
5,640,846 + AO353_25570 0.36 -1.0
5,640,849 + AO353_25570 0.36 +0.6
5,640,849 + AO353_25570 0.36 -1.0
5,640,850 - AO353_25570 0.36 -0.4
5,640,850 - AO353_25570 0.36 -0.4
5,641,065 + AO353_25570 0.50 -2.8
5,641,065 + AO353_25570 0.50 -0.4
5,641,065 + AO353_25570 0.50 -1.4
5,641,065 + AO353_25570 0.50 -1.3
5,641,065 + AO353_25570 0.50 -0.4
5,641,065 + AO353_25570 0.50 -0.0
5,641,066 - AO353_25570 0.50 +1.0
5,641,066 - AO353_25570 0.50 -0.0
5,641,066 - AO353_25570 0.50 -1.4
5,641,066 - AO353_25570 0.50 -1.0
5,641,224 + AO353_25570 0.60 -0.0
5,641,224 + AO353_25570 0.60 -1.4
5,641,224 + AO353_25570 0.60 -0.2
5,641,225 - AO353_25570 0.60 +2.2
5,641,225 - AO353_25570 0.60 +0.6
5,641,225 - AO353_25570 0.60 -2.0
5,641,521 + AO353_25570 0.78 -1.8
5,641,521 + AO353_25570 0.78 -1.8
5,641,521 + +2.9
5,641,521 + AO353_25570 0.78 -0.2
5,641,522 - AO353_25570 0.78 -0.8
5,641,522 - AO353_25570 0.78 -0.8
5,641,522 - AO353_25570 0.78 -1.4
5,641,569 - AO353_25570 0.81 -2.9
5,641,569 - AO353_25570 0.81 -1.8
5,641,569 - AO353_25570 0.81 +0.2
5,641,569 - AO353_25570 0.81 -2.2
5,641,574 + AO353_25570 0.81 -3.1
5,641,764 + +0.6
5,641,836 + -1.2
5,641,836 + -1.0
5,641,901 + -0.0
5,641,902 - +1.1
5,641,902 - +1.3
5,642,066 - AO353_25575 0.29 +1.1
5,642,154 - AO353_25575 0.46 +1.9
5,642,229 + AO353_25575 0.60 +1.8
5,642,229 + AO353_25575 0.60 +0.1
5,642,230 - AO353_25575 0.61 +0.6
5,642,230 - AO353_25575 0.61 -0.9
5,642,301 + AO353_25575 0.74 +0.1
5,642,302 - AO353_25575 0.74 +0.8
5,642,302 - AO353_25575 0.74 +1.7
5,642,302 - +1.9
5,642,379 - AO353_25575 0.89 +1.0
5,642,418 + +0.3
5,642,441 - +1.3
5,642,441 - -1.9
5,642,441 - -0.4
5,642,441 - -0.1
5,642,441 - -1.1
5,642,445 - +1.4
5,642,457 + -0.0
5,642,545 - -1.4
5,642,572 + +0.5
5,642,573 - +0.2
5,642,573 - +0.7
5,642,594 - -0.0
5,642,624 - -0.7
5,642,624 - -0.4
5,642,626 - +0.4
5,642,626 - -0.7
5,642,626 - +2.6
5,642,626 - +0.2
5,642,658 + +0.6
5,642,796 + AO353_25580 0.10 -0.2
5,642,796 + AO353_25580 0.10 +2.6
5,642,796 + AO353_25580 0.10 -1.8
5,642,797 - AO353_25580 0.10 -0.2
5,642,861 + AO353_25580 0.17 -1.2
5,642,861 + AO353_25580 0.17 +1.6
5,642,862 - AO353_25580 0.17 -1.8
5,642,862 - AO353_25580 0.17 +0.6

Or see this region's nucleotide sequence