Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03695

Experiment: Doxycycline hyclate 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03690 and AO353_03695 are separated by 4 nucleotidesAO353_03695 and AO353_03700 overlap by 4 nucleotides AO353_03690: AO353_03690 - glycoside hydrolase, at 789,692 to 790,801 _03690 AO353_03695: AO353_03695 - deacetylase, at 790,806 to 791,570 _03695 AO353_03700: AO353_03700 - hypothetical protein, at 791,567 to 792,562 _03700 Position (kb) 790 791 792Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 789.845 kb on + strand, within AO353_03690at 789.845 kb on + strand, within AO353_03690at 789.846 kb on - strand, within AO353_03690at 789.846 kb on - strand, within AO353_03690at 789.917 kb on - strand, within AO353_03690at 789.917 kb on - strand, within AO353_03690at 789.917 kb on - strand, within AO353_03690at 789.948 kb on + strand, within AO353_03690at 789.948 kb on + strand, within AO353_03690at 789.949 kb on - strand, within AO353_03690at 789.949 kb on - strand, within AO353_03690at 789.949 kb on - strand, within AO353_03690at 789.949 kb on - strand, within AO353_03690at 789.965 kb on + strand, within AO353_03690at 789.966 kb on - strand, within AO353_03690at 790.028 kb on + strand, within AO353_03690at 790.028 kb on + strand, within AO353_03690at 790.028 kb on + strand, within AO353_03690at 790.028 kb on + strand, within AO353_03690at 790.028 kb on + strand, within AO353_03690at 790.028 kb on + strand, within AO353_03690at 790.029 kb on - strand, within AO353_03690at 790.029 kb on - strand, within AO353_03690at 790.029 kb on - strand, within AO353_03690at 790.097 kb on + strand, within AO353_03690at 790.097 kb on + strand, within AO353_03690at 790.097 kb on + strand, within AO353_03690at 790.097 kb on + strand, within AO353_03690at 790.097 kb on + strand, within AO353_03690at 790.097 kb on + strand, within AO353_03690at 790.097 kb on + strand, within AO353_03690at 790.097 kb on + strand, within AO353_03690at 790.097 kb on + strand, within AO353_03690at 790.097 kb on + strand, within AO353_03690at 790.098 kb on - strand, within AO353_03690at 790.098 kb on - strand, within AO353_03690at 790.098 kb on - strand, within AO353_03690at 790.098 kb on - strand, within AO353_03690at 790.098 kb on - strand, within AO353_03690at 790.098 kb on - strand, within AO353_03690at 790.098 kb on - strand, within AO353_03690at 790.098 kb on - strand, within AO353_03690at 790.098 kb on - strand, within AO353_03690at 790.098 kb on - strand, within AO353_03690at 790.098 kb on - strand, within AO353_03690at 790.098 kb on - strand, within AO353_03690at 790.112 kb on + strand, within AO353_03690at 790.113 kb on - strand, within AO353_03690at 790.293 kb on + strand, within AO353_03690at 790.294 kb on - strand, within AO353_03690at 790.608 kb on + strand, within AO353_03690at 790.608 kb on + strand, within AO353_03690at 790.608 kb on + strand, within AO353_03690at 790.609 kb on - strand, within AO353_03690at 790.624 kb on + strand, within AO353_03690at 790.624 kb on + strand, within AO353_03690at 790.624 kb on + strand, within AO353_03690at 790.624 kb on + strand, within AO353_03690at 790.672 kb on + strand, within AO353_03690at 790.672 kb on + strand, within AO353_03690at 790.672 kb on + strand, within AO353_03690at 790.672 kb on + strand, within AO353_03690at 790.672 kb on + strand, within AO353_03690at 790.672 kb on + strand, within AO353_03690at 790.672 kb on + strand, within AO353_03690at 790.673 kb on - strand, within AO353_03690at 790.673 kb on - strand, within AO353_03690at 790.673 kb on - strand, within AO353_03690at 790.673 kb on - strand, within AO353_03690at 790.673 kb on - strand, within AO353_03690at 790.673 kb on - strand, within AO353_03690at 790.673 kb on - strand, within AO353_03690at 790.673 kb on - strand, within AO353_03690at 790.689 kb on - strand, within AO353_03690at 790.715 kb on + strandat 790.715 kb on + strandat 790.715 kb on + strandat 790.716 kb on - strandat 790.716 kb on - strandat 790.716 kb on - strandat 790.716 kb on - strandat 790.716 kb on - strandat 790.754 kb on + strandat 790.755 kb on - strandat 790.757 kb on + strandat 790.757 kb on + strandat 790.758 kb on - strandat 790.758 kb on - strandat 790.758 kb on - strandat 790.866 kb on + strandat 791.028 kb on + strand, within AO353_03695at 791.031 kb on + strand, within AO353_03695at 791.031 kb on + strand, within AO353_03695at 791.031 kb on + strand, within AO353_03695at 791.031 kb on + strand, within AO353_03695at 791.031 kb on + strand, within AO353_03695at 791.032 kb on - strand, within AO353_03695at 791.032 kb on - strand, within AO353_03695at 791.032 kb on - strand, within AO353_03695at 791.032 kb on - strand, within AO353_03695at 791.032 kb on - strand, within AO353_03695at 791.032 kb on - strandat 791.092 kb on - strand, within AO353_03695at 791.092 kb on - strand, within AO353_03695at 791.092 kb on - strand, within AO353_03695at 791.092 kb on - strand, within AO353_03695at 791.092 kb on - strand, within AO353_03695at 791.092 kb on - strand, within AO353_03695at 791.112 kb on + strand, within AO353_03695at 791.112 kb on + strand, within AO353_03695at 791.113 kb on - strand, within AO353_03695at 791.113 kb on - strand, within AO353_03695at 791.113 kb on - strand, within AO353_03695at 791.113 kb on - strand, within AO353_03695at 791.113 kb on - strand, within AO353_03695at 791.113 kb on - strand, within AO353_03695at 791.262 kb on + strand, within AO353_03695at 791.262 kb on + strand, within AO353_03695at 791.262 kb on + strand, within AO353_03695at 791.263 kb on - strand, within AO353_03695at 791.263 kb on - strand, within AO353_03695at 791.263 kb on - strand, within AO353_03695at 791.428 kb on + strand, within AO353_03695at 791.429 kb on - strand, within AO353_03695at 791.429 kb on - strand, within AO353_03695at 791.466 kb on + strand, within AO353_03695at 791.466 kb on + strand, within AO353_03695at 791.558 kb on + strandat 791.559 kb on - strandat 791.622 kb on + strandat 791.623 kb on - strandat 791.643 kb on + strandat 791.643 kb on + strandat 791.643 kb on + strandat 791.643 kb on + strandat 791.643 kb on + strandat 791.644 kb on - strandat 791.644 kb on - strandat 791.644 kb on - strandat 791.644 kb on - strandat 791.727 kb on + strand, within AO353_03700at 791.969 kb on + strand, within AO353_03700at 791.969 kb on + strand, within AO353_03700at 791.969 kb on + strand, within AO353_03700at 791.969 kb on + strand, within AO353_03700at 791.969 kb on + strand, within AO353_03700at 791.969 kb on + strand, within AO353_03700at 791.969 kb on + strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 791.970 kb on - strand, within AO353_03700at 792.071 kb on + strand, within AO353_03700at 792.072 kb on - strand, within AO353_03700at 792.125 kb on - strand, within AO353_03700at 792.125 kb on - strand, within AO353_03700at 792.222 kb on + strand, within AO353_03700at 792.222 kb on + strand, within AO353_03700at 792.222 kb on + strand, within AO353_03700at 792.223 kb on - strand, within AO353_03700at 792.223 kb on - strand, within AO353_03700at 792.223 kb on - strand, within AO353_03700at 792.223 kb on - strand, within AO353_03700at 792.258 kb on - strand, within AO353_03700at 792.259 kb on + strand, within AO353_03700at 792.260 kb on - strand, within AO353_03700at 792.260 kb on - strand, within AO353_03700at 792.260 kb on - strand, within AO353_03700at 792.260 kb on - strand, within AO353_03700at 792.269 kb on + strand, within AO353_03700at 792.269 kb on + strand, within AO353_03700at 792.269 kb on + strand, within AO353_03700at 792.270 kb on - strand, within AO353_03700at 792.270 kb on - strand, within AO353_03700at 792.270 kb on - strand, within AO353_03700at 792.270 kb on - strand, within AO353_03700at 792.424 kb on + strand, within AO353_03700at 792.470 kb on + strandat 792.470 kb on + strandat 792.470 kb on + strandat 792.470 kb on + strandat 792.470 kb on + strandat 792.470 kb on + strandat 792.471 kb on - strandat 792.471 kb on - strandat 792.471 kb on - strandat 792.471 kb on - strandat 792.471 kb on - strandat 792.471 kb on - strandat 792.471 kb on - strandat 792.471 kb on - strandat 792.471 kb on - strandat 792.471 kb on - strandat 792.473 kb on + strandat 792.473 kb on + strandat 792.473 kb on + strandat 792.473 kb on + strandat 792.473 kb on + strandat 792.473 kb on + strandat 792.473 kb on + strandat 792.473 kb on + strandat 792.473 kb on + strandat 792.473 kb on + strandat 792.474 kb on - strandat 792.474 kb on - strandat 792.474 kb on - strandat 792.474 kb on - strandat 792.479 kb on + strandat 792.479 kb on + strandat 792.479 kb on + strandat 792.479 kb on + strandat 792.479 kb on + strandat 792.479 kb on + strandat 792.479 kb on + strandat 792.480 kb on - strandat 792.480 kb on - strandat 792.480 kb on - strandat 792.480 kb on - strandat 792.480 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml
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789,845 + AO353_03690 0.14 +0.7
789,845 + AO353_03690 0.14 +1.7
789,846 - AO353_03690 0.14 +0.1
789,846 - AO353_03690 0.14 -1.0
789,917 - AO353_03690 0.20 +0.8
789,917 - AO353_03690 0.20 -0.4
789,917 - AO353_03690 0.20 +0.1
789,948 + AO353_03690 0.23 -0.0
789,948 + AO353_03690 0.23 -0.0
789,949 - AO353_03690 0.23 -1.7
789,949 - AO353_03690 0.23 +0.5
789,949 - AO353_03690 0.23 -0.4
789,949 - AO353_03690 0.23 +0.4
789,965 + AO353_03690 0.25 -2.3
789,966 - AO353_03690 0.25 -0.0
790,028 + AO353_03690 0.30 +2.2
790,028 + AO353_03690 0.30 -1.3
790,028 + AO353_03690 0.30 -0.6
790,028 + AO353_03690 0.30 -0.6
790,028 + AO353_03690 0.30 +0.5
790,028 + AO353_03690 0.30 -1.8
790,029 - AO353_03690 0.30 +0.4
790,029 - AO353_03690 0.30 -1.3
790,029 - AO353_03690 0.30 -1.0
790,097 + AO353_03690 0.36 +1.7
790,097 + AO353_03690 0.36 -0.0
790,097 + AO353_03690 0.36 -1.6
790,097 + AO353_03690 0.36 -0.8
790,097 + AO353_03690 0.36 +0.7
790,097 + AO353_03690 0.36 -0.6
790,097 + AO353_03690 0.36 +1.0
790,097 + AO353_03690 0.36 +2.6
790,097 + AO353_03690 0.36 +0.2
790,097 + AO353_03690 0.36 -0.0
790,098 - AO353_03690 0.37 -0.2
790,098 - AO353_03690 0.37 -0.0
790,098 - AO353_03690 0.37 +1.0
790,098 - AO353_03690 0.37 +2.0
790,098 - AO353_03690 0.37 +0.1
790,098 - AO353_03690 0.37 -1.1
790,098 - AO353_03690 0.37 -1.3
790,098 - AO353_03690 0.37 -0.2
790,098 - AO353_03690 0.37 -1.3
790,098 - AO353_03690 0.37 +1.0
790,098 - AO353_03690 0.37 +2.3
790,098 - AO353_03690 0.37 +0.7
790,112 + AO353_03690 0.38 -0.0
790,113 - AO353_03690 0.38 -0.6
790,293 + AO353_03690 0.54 -1.2
790,294 - AO353_03690 0.54 +0.1
790,608 + AO353_03690 0.83 -0.8
790,608 + AO353_03690 0.83 +1.0
790,608 + AO353_03690 0.83 -0.8
790,609 - AO353_03690 0.83 -0.1
790,624 + AO353_03690 0.84 +0.4
790,624 + AO353_03690 0.84 -1.6
790,624 + AO353_03690 0.84 +1.7
790,624 + AO353_03690 0.84 -2.2
790,672 + AO353_03690 0.88 +0.9
790,672 + AO353_03690 0.88 -0.8
790,672 + AO353_03690 0.88 +0.5
790,672 + AO353_03690 0.88 +1.6
790,672 + AO353_03690 0.88 +0.3
790,672 + AO353_03690 0.88 -0.8
790,672 + AO353_03690 0.88 +1.8
790,673 - AO353_03690 0.88 -0.0
790,673 - AO353_03690 0.88 -1.8
790,673 - AO353_03690 0.88 -1.0
790,673 - AO353_03690 0.88 +0.6
790,673 - AO353_03690 0.88 +0.6
790,673 - AO353_03690 0.88 -1.6
790,673 - AO353_03690 0.88 -0.8
790,673 - AO353_03690 0.88 +1.2
790,689 - AO353_03690 0.90 -1.6
790,715 + +0.4
790,715 + +1.2
790,715 + -0.0
790,716 - -0.3
790,716 - -0.3
790,716 - -1.8
790,716 - -1.0
790,716 - +0.5
790,754 + -2.0
790,755 - -1.0
790,757 + -1.3
790,757 + -1.3
790,758 - +0.9
790,758 - -0.0
790,758 - -2.2
790,866 + +0.8
791,028 + AO353_03695 0.29 -2.8
791,031 + AO353_03695 0.29 +0.1
791,031 + AO353_03695 0.29 +1.0
791,031 + AO353_03695 0.29 -0.9
791,031 + AO353_03695 0.29 -0.2
791,031 + AO353_03695 0.29 -1.0
791,032 - AO353_03695 0.30 -1.7
791,032 - AO353_03695 0.30 +0.4
791,032 - AO353_03695 0.30 -0.6
791,032 - AO353_03695 0.30 -1.5
791,032 - AO353_03695 0.30 -0.4
791,032 - +1.0
791,092 - AO353_03695 0.37 -0.3
791,092 - AO353_03695 0.37 -0.4
791,092 - AO353_03695 0.37 -0.8
791,092 - AO353_03695 0.37 +0.7
791,092 - AO353_03695 0.37 -1.0
791,092 - AO353_03695 0.37 -0.6
791,112 + AO353_03695 0.40 +0.5
791,112 + AO353_03695 0.40 +1.7
791,113 - AO353_03695 0.40 +0.6
791,113 - AO353_03695 0.40 -1.6
791,113 - AO353_03695 0.40 -0.5
791,113 - AO353_03695 0.40 -0.6
791,113 - AO353_03695 0.40 -2.0
791,113 - AO353_03695 0.40 +0.0
791,262 + AO353_03695 0.60 -0.0
791,262 + AO353_03695 0.60 +0.7
791,262 + AO353_03695 0.60 -0.2
791,263 - AO353_03695 0.60 -0.5
791,263 - AO353_03695 0.60 +0.4
791,263 - AO353_03695 0.60 -2.3
791,428 + AO353_03695 0.81 -1.0
791,429 - AO353_03695 0.81 -0.0
791,429 - AO353_03695 0.81 -1.8
791,466 + AO353_03695 0.86 -0.6
791,466 + AO353_03695 0.86 -1.3
791,558 + +1.3
791,559 - -0.6
791,622 + +1.4
791,623 - -1.0
791,643 + -0.0
791,643 + +0.2
791,643 + -1.0
791,643 + -0.2
791,643 + -1.8
791,644 - -2.2
791,644 - +1.0
791,644 - -0.7
791,644 - -0.2
791,727 + AO353_03700 0.16 -2.0
791,969 + AO353_03700 0.40 -0.3
791,969 + AO353_03700 0.40 -1.0
791,969 + AO353_03700 0.40 -0.3
791,969 + AO353_03700 0.40 +0.5
791,969 + AO353_03700 0.40 -1.0
791,969 + AO353_03700 0.40 -0.0
791,969 + AO353_03700 0.40 -1.0
791,970 - AO353_03700 0.40 +1.1
791,970 - AO353_03700 0.40 +0.6
791,970 - AO353_03700 0.40 +2.0
791,970 - AO353_03700 0.40 -1.3
791,970 - AO353_03700 0.40 -0.8
791,970 - AO353_03700 0.40 -0.0
791,970 - AO353_03700 0.40 +2.0
791,970 - AO353_03700 0.40 +0.8
791,970 - AO353_03700 0.40 -2.0
791,970 - AO353_03700 0.40 -0.8
791,970 - AO353_03700 0.40 +0.3
791,970 - AO353_03700 0.40 +1.6
791,970 - AO353_03700 0.40 -0.5
791,970 - AO353_03700 0.40 +0.5
791,970 - AO353_03700 0.40 -1.8
792,071 + AO353_03700 0.51 -0.6
792,072 - AO353_03700 0.51 +1.3
792,125 - AO353_03700 0.56 +0.6
792,125 - AO353_03700 0.56 -0.3
792,222 + AO353_03700 0.66 +1.0
792,222 + AO353_03700 0.66 -0.6
792,222 + AO353_03700 0.66 +0.5
792,223 - AO353_03700 0.66 -0.3
792,223 - AO353_03700 0.66 -0.7
792,223 - AO353_03700 0.66 -0.4
792,223 - AO353_03700 0.66 -2.5
792,258 - AO353_03700 0.69 -0.3
792,259 + AO353_03700 0.69 -1.6
792,260 - AO353_03700 0.70 -0.5
792,260 - AO353_03700 0.70 +0.4
792,260 - AO353_03700 0.70 +0.1
792,260 - AO353_03700 0.70 -1.0
792,269 + AO353_03700 0.70 -3.0
792,269 + AO353_03700 0.70 +1.4
792,269 + AO353_03700 0.70 -1.7
792,270 - AO353_03700 0.71 +1.2
792,270 - AO353_03700 0.71 +0.4
792,270 - AO353_03700 0.71 -2.3
792,270 - AO353_03700 0.71 +0.3
792,424 + AO353_03700 0.86 -1.0
792,470 + -0.0
792,470 + -1.0
792,470 + -0.1
792,470 + -3.1
792,470 + -1.3
792,470 + +0.3
792,471 - -2.8
792,471 - -1.3
792,471 - -0.0
792,471 - +1.0
792,471 - +0.2
792,471 - -0.6
792,471 - -0.3
792,471 - +0.8
792,471 - -0.6
792,471 - -1.9
792,473 + +0.4
792,473 + +0.6
792,473 + -0.0
792,473 + -0.0
792,473 + -2.6
792,473 + -1.3
792,473 + -0.0
792,473 + -0.3
792,473 + -3.0
792,473 + +1.0
792,474 - -0.5
792,474 - -0.4
792,474 - +1.0
792,474 - +0.6
792,479 + +0.5
792,479 + -0.0
792,479 + +1.0
792,479 + +1.3
792,479 + -0.2
792,479 + +0.1
792,479 + +0.5
792,480 - -0.6
792,480 - +0.0
792,480 - +0.3
792,480 - -0.3
792,480 - -2.2

Or see this region's nucleotide sequence