Experiment: Doxycycline hyclate 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03580 and AO353_03585 are separated by 0 nucleotides AO353_03585 and AO353_03590 are separated by 118 nucleotides AO353_03590 and AO353_03595 are separated by 203 nucleotides
AO353_03580: AO353_03580 - ATP-dependent DNA helicase RuvB, at 764,872 to 765,933
_03580
AO353_03585: AO353_03585 - ATP-dependent DNA helicase RuvA, at 765,934 to 766,542
_03585
AO353_03590: AO353_03590 - crossover junction endodeoxyribonuclease RuvC, at 766,661 to 767,185
_03590
AO353_03595: AO353_03595 - hypothetical protein, at 767,389 to 768,135
_03595
Position (kb) 766
767
768 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 765.836 kb on + strand at 765.837 kb on - strand at 765.935 kb on + strand at 765.936 kb on - strand at 765.936 kb on - strand at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.583 kb on + strand at 766.654 kb on + strand at 766.654 kb on + strand at 766.654 kb on + strand at 766.655 kb on - strand at 766.831 kb on + strand, within AO353_03590 at 766.882 kb on - strand, within AO353_03590 at 766.882 kb on - strand, within AO353_03590 at 767.080 kb on + strand, within AO353_03590 at 767.103 kb on + strand, within AO353_03590 at 767.103 kb on + strand, within AO353_03590 at 767.104 kb on - strand, within AO353_03590 at 767.129 kb on + strand, within AO353_03590 at 767.129 kb on + strand, within AO353_03590 at 767.129 kb on + strand, within AO353_03590 at 767.129 kb on + strand, within AO353_03590 at 767.177 kb on + strand at 767.178 kb on - strand at 767.186 kb on - strand at 767.201 kb on - strand at 767.296 kb on + strand at 767.297 kb on - strand at 767.435 kb on + strand at 767.435 kb on + strand at 767.584 kb on - strand, within AO353_03595 at 767.595 kb on - strand, within AO353_03595 at 767.742 kb on - strand, within AO353_03595 at 767.742 kb on - strand, within AO353_03595 at 767.742 kb on - strand, within AO353_03595 at 767.876 kb on + strand, within AO353_03595 at 767.876 kb on + strand, within AO353_03595 at 767.876 kb on + strand, within AO353_03595 at 767.877 kb on - strand, within AO353_03595 at 767.877 kb on - strand, within AO353_03595 at 767.877 kb on - strand, within AO353_03595 at 768.135 kb on + strand at 768.135 kb on + strand at 768.135 kb on + strand at 768.135 kb on + strand at 768.156 kb on + strand at 768.157 kb on - strand at 768.170 kb on - strand at 768.171 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml remove 765,836 + -2.3 765,837 - -0.0 765,935 + -1.3 765,936 - -1.6 765,936 - +1.0 766,480 + AO353_03585 0.90 +1.7 766,480 + AO353_03585 0.90 -0.4 766,480 + AO353_03585 0.90 -0.6 766,480 + AO353_03585 0.90 -1.8 766,481 - AO353_03585 0.90 -2.2 766,481 - AO353_03585 0.90 -1.0 766,481 - AO353_03585 0.90 -2.5 766,583 + -0.5 766,654 + -1.0 766,654 + -1.6 766,654 + -2.6 766,655 - +0.1 766,831 + AO353_03590 0.32 +1.3 766,882 - AO353_03590 0.42 -0.6 766,882 - AO353_03590 0.42 -2.2 767,080 + AO353_03590 0.80 -1.9 767,103 + AO353_03590 0.84 +0.4 767,103 + AO353_03590 0.84 -0.0 767,104 - AO353_03590 0.84 -0.4 767,129 + AO353_03590 0.89 -1.3 767,129 + AO353_03590 0.89 -0.4 767,129 + AO353_03590 0.89 -0.2 767,129 + AO353_03590 0.89 -1.8 767,177 + -0.6 767,178 - -1.0 767,186 - +0.4 767,201 - +0.6 767,296 + -1.0 767,297 - -1.3 767,435 + -1.8 767,435 + -0.0 767,584 - AO353_03595 0.26 -4.1 767,595 - AO353_03595 0.28 -1.3 767,742 - AO353_03595 0.47 -1.6 767,742 - AO353_03595 0.47 -1.5 767,742 - AO353_03595 0.47 +0.4 767,876 + AO353_03595 0.65 -1.8 767,876 + AO353_03595 0.65 -0.0 767,876 + AO353_03595 0.65 -0.6 767,877 - AO353_03595 0.65 -1.3 767,877 - AO353_03595 0.65 -0.9 767,877 - AO353_03595 0.65 -1.8 768,135 + -0.9 768,135 + -0.0 768,135 + -1.6 768,135 + -0.0 768,156 + -1.6 768,157 - -1.6 768,170 - -2.9 768,171 + -0.6
Or see this region's nucleotide sequence