Experiment: Doxycycline hyclate 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02935 and AO353_02940 are separated by 388 nucleotides AO353_02940 and AO353_02945 are separated by 165 nucleotides
AO353_02935: AO353_02935 - ribose-phosphate pyrophosphokinase, at 624,348 to 624,932
_02935
AO353_02940: AO353_02940 - DNA-binding protein, at 625,321 to 625,647
_02940
AO353_02945: AO353_02945 - magnesium transporter, at 625,813 to 627,255
_02945
Position (kb) 625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 624.321 kb on - strand at 624.321 kb on - strand at 624.321 kb on - strand at 624.321 kb on - strand at 624.321 kb on - strand at 624.321 kb on - strand at 624.349 kb on + strand at 624.349 kb on + strand at 624.350 kb on - strand at 624.350 kb on - strand at 624.390 kb on + strand at 624.390 kb on + strand at 624.390 kb on + strand at 624.481 kb on - strand, within AO353_02935 at 624.605 kb on - strand, within AO353_02935 at 624.651 kb on + strand, within AO353_02935 at 624.651 kb on + strand, within AO353_02935 at 624.651 kb on + strand, within AO353_02935 at 624.651 kb on + strand, within AO353_02935 at 624.652 kb on - strand, within AO353_02935 at 624.652 kb on - strand, within AO353_02935 at 624.652 kb on - strand, within AO353_02935 at 624.652 kb on - strand, within AO353_02935 at 624.652 kb on - strand, within AO353_02935 at 624.652 kb on - strand, within AO353_02935 at 624.652 kb on - strand, within AO353_02935 at 624.652 kb on - strand, within AO353_02935 at 624.669 kb on + strand, within AO353_02935 at 624.669 kb on + strand, within AO353_02935 at 624.670 kb on - strand, within AO353_02935 at 624.670 kb on - strand, within AO353_02935 at 624.701 kb on - strand, within AO353_02935 at 624.913 kb on + strand at 624.913 kb on + strand at 624.914 kb on - strand at 624.914 kb on - strand at 624.914 kb on - strand at 624.914 kb on - strand at 624.914 kb on - strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.917 kb on + strand at 624.918 kb on - strand at 624.918 kb on - strand at 624.918 kb on - strand at 624.918 kb on - strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.936 kb on + strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.937 kb on - strand at 624.938 kb on + strand at 624.938 kb on + strand at 624.939 kb on - strand at 624.939 kb on - strand at 624.985 kb on + strand at 624.985 kb on + strand at 624.992 kb on + strand at 624.992 kb on + strand at 624.993 kb on - strand at 624.999 kb on + strand at 625.000 kb on - strand at 625.023 kb on + strand at 625.023 kb on + strand at 625.023 kb on + strand at 625.024 kb on - strand at 625.087 kb on - strand at 625.087 kb on - strand at 625.087 kb on - strand at 625.097 kb on + strand at 625.098 kb on - strand at 625.164 kb on + strand at 625.164 kb on + strand at 625.164 kb on + strand at 625.164 kb on + strand at 625.165 kb on - strand at 625.165 kb on - strand at 625.165 kb on - strand at 625.223 kb on + strand at 625.224 kb on - strand at 625.262 kb on + strand at 625.262 kb on + strand at 625.262 kb on + strand at 625.262 kb on + strand at 625.263 kb on - strand at 625.263 kb on - strand at 625.263 kb on - strand at 625.263 kb on - strand at 625.263 kb on - strand at 625.263 kb on - strand at 625.319 kb on - strand at 625.319 kb on - strand at 625.321 kb on - strand at 625.321 kb on - strand at 625.345 kb on + strand at 625.357 kb on - strand, within AO353_02940 at 625.376 kb on + strand, within AO353_02940 at 625.377 kb on - strand, within AO353_02940 at 625.377 kb on - strand, within AO353_02940 at 625.476 kb on + strand, within AO353_02940 at 625.476 kb on + strand, within AO353_02940 at 625.476 kb on + strand, within AO353_02940 at 625.666 kb on - strand at 625.714 kb on + strand at 625.714 kb on + strand at 625.714 kb on + strand at 625.714 kb on + strand at 625.714 kb on + strand at 625.715 kb on - strand at 625.715 kb on - strand at 625.715 kb on - strand at 625.715 kb on - strand at 625.745 kb on + strand at 625.745 kb on + strand at 625.745 kb on + strand at 625.745 kb on + strand at 625.746 kb on - strand at 625.746 kb on - strand at 625.746 kb on - strand at 625.751 kb on + strand at 625.752 kb on - strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.754 kb on + strand at 625.755 kb on - strand at 625.755 kb on - strand at 625.755 kb on - strand at 625.755 kb on - strand at 625.755 kb on - strand at 625.755 kb on - strand at 625.806 kb on + strand at 625.806 kb on + strand at 625.806 kb on + strand at 625.806 kb on + strand at 625.806 kb on + strand at 625.807 kb on - strand at 625.807 kb on - strand at 625.807 kb on - strand at 625.807 kb on - strand at 625.807 kb on - strand at 625.807 kb on - strand at 626.019 kb on - strand, within AO353_02945 at 626.027 kb on + strand, within AO353_02945 at 626.027 kb on + strand, within AO353_02945 at 626.027 kb on + strand, within AO353_02945 at 626.027 kb on + strand, within AO353_02945 at 626.027 kb on + strand, within AO353_02945 at 626.027 kb on + strand, within AO353_02945 at 626.027 kb on + strand, within AO353_02945 at 626.027 kb on + strand, within AO353_02945 at 626.028 kb on - strand, within AO353_02945 at 626.028 kb on - strand, within AO353_02945 at 626.028 kb on - strand, within AO353_02945 at 626.028 kb on - strand, within AO353_02945 at 626.028 kb on - strand, within AO353_02945 at 626.028 kb on - strand, within AO353_02945 at 626.109 kb on + strand, within AO353_02945 at 626.110 kb on - strand, within AO353_02945 at 626.157 kb on + strand, within AO353_02945 at 626.157 kb on + strand, within AO353_02945 at 626.158 kb on - strand, within AO353_02945 at 626.178 kb on + strand, within AO353_02945 at 626.235 kb on + strand, within AO353_02945 at 626.343 kb on + strand, within AO353_02945 at 626.344 kb on - strand, within AO353_02945 at 626.344 kb on - strand, within AO353_02945 at 626.484 kb on - strand, within AO353_02945 at 626.510 kb on + strand, within AO353_02945 at 626.511 kb on - strand, within AO353_02945 at 626.630 kb on + strand, within AO353_02945 at 626.630 kb on + strand, within AO353_02945
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml remove 624,321 - +0.9 624,321 - -0.9 624,321 - -0.3 624,321 - -1.7 624,321 - -0.7 624,321 - +0.1 624,349 + -1.7 624,349 + +0.2 624,350 - +0.3 624,350 - +0.6 624,390 + +1.7 624,390 + +1.9 624,390 + -2.7 624,481 - AO353_02935 0.23 -2.7 624,605 - AO353_02935 0.44 +0.9 624,651 + AO353_02935 0.52 -0.1 624,651 + AO353_02935 0.52 +0.3 624,651 + AO353_02935 0.52 -1.1 624,651 + AO353_02935 0.52 -1.5 624,652 - AO353_02935 0.52 +0.7 624,652 - AO353_02935 0.52 +0.5 624,652 - AO353_02935 0.52 -0.7 624,652 - AO353_02935 0.52 -0.2 624,652 - AO353_02935 0.52 +0.4 624,652 - AO353_02935 0.52 -0.7 624,652 - AO353_02935 0.52 -2.5 624,652 - AO353_02935 0.52 -2.5 624,669 + AO353_02935 0.55 -1.3 624,669 + AO353_02935 0.55 -0.9 624,670 - AO353_02935 0.55 +0.4 624,670 - AO353_02935 0.55 -1.9 624,701 - AO353_02935 0.60 +0.9 624,913 + -0.2 624,913 + +0.1 624,914 - -0.4 624,914 - -0.7 624,914 - -0.7 624,914 - -1.2 624,914 - -1.9 624,917 + -1.1 624,917 + +0.3 624,917 + -1.2 624,917 + -3.1 624,917 + -0.6 624,917 + +0.0 624,917 + -2.0 624,917 + -1.7 624,917 + -3.0 624,917 + +0.7 624,917 + +0.1 624,917 + -0.4 624,917 + +0.6 624,917 + -0.7 624,917 + -1.2 624,917 + -0.6 624,917 + +0.7 624,917 + +0.5 624,917 + -0.5 624,918 - +0.5 624,918 - +0.8 624,918 - -1.4 624,918 - +0.2 624,936 + +0.9 624,936 + -0.9 624,936 + +0.0 624,936 + +0.6 624,936 + -0.3 624,936 + +1.3 624,936 + +0.2 624,936 + -0.1 624,936 + +0.1 624,936 + +0.2 624,936 + -0.1 624,936 + -1.4 624,936 + -1.4 624,936 + -0.3 624,936 + +0.2 624,936 + -2.4 624,936 + -0.7 624,936 + -0.1 624,936 + +1.2 624,936 + +0.1 624,936 + +0.9 624,936 + +2.9 624,936 + -0.7 624,937 - +2.5 624,937 - +0.4 624,937 - +0.5 624,937 - -0.9 624,937 - +1.0 624,937 - +0.6 624,937 - +0.7 624,937 - +1.5 624,937 - +0.9 624,937 - +0.2 624,937 - -1.9 624,937 - +0.9 624,937 - -1.7 624,937 - +1.3 624,937 - +0.9 624,937 - -1.4 624,938 + +0.8 624,938 + +0.9 624,939 - -0.1 624,939 - +0.3 624,985 + -1.9 624,985 + -0.5 624,992 + +0.6 624,992 + +0.5 624,993 - -0.7 624,999 + +0.3 625,000 - +0.9 625,023 + +1.9 625,023 + +2.3 625,023 + -1.0 625,024 - +0.3 625,087 - -0.3 625,087 - +0.1 625,087 - -0.6 625,097 + +0.9 625,098 - +1.2 625,164 + +0.9 625,164 + +0.7 625,164 + -0.2 625,164 + -0.3 625,165 - +0.1 625,165 - -1.5 625,165 - -0.1 625,223 + +0.9 625,224 - +0.3 625,262 + -0.7 625,262 + +0.5 625,262 + +0.5 625,262 + +0.4 625,263 - -0.4 625,263 - -2.1 625,263 - -0.4 625,263 - -2.1 625,263 - -0.1 625,263 - -0.7 625,319 - -1.1 625,319 - -2.7 625,321 - -1.1 625,321 - -0.9 625,345 + +0.9 625,357 - AO353_02940 0.11 -2.8 625,376 + AO353_02940 0.17 -2.5 625,377 - AO353_02940 0.17 -2.1 625,377 - AO353_02940 0.17 -0.9 625,476 + AO353_02940 0.47 -0.7 625,476 + AO353_02940 0.47 -1.7 625,476 + AO353_02940 0.47 -1.9 625,666 - +1.9 625,714 + -0.1 625,714 + -1.7 625,714 + +0.6 625,714 + -0.3 625,714 + +1.1 625,715 - +0.8 625,715 - -2.2 625,715 - +0.9 625,715 - +0.4 625,745 + -0.2 625,745 + +0.3 625,745 + -0.1 625,745 + -0.7 625,746 - -0.4 625,746 - -0.8 625,746 - -1.4 625,751 + -0.5 625,752 - +0.5 625,754 + -0.9 625,754 + -0.8 625,754 + -0.4 625,754 + -2.2 625,754 + +1.1 625,754 + -1.9 625,754 + +0.3 625,754 + -0.7 625,754 + -0.1 625,754 + -2.2 625,754 + -0.7 625,754 + +1.9 625,754 + +0.3 625,754 + -0.7 625,755 - -1.7 625,755 - -0.7 625,755 - -0.2 625,755 - -0.6 625,755 - -2.1 625,755 - -0.1 625,806 + -0.1 625,806 + -0.4 625,806 + -0.4 625,806 + -0.4 625,806 + +0.1 625,807 - -0.7 625,807 - -0.5 625,807 - -0.7 625,807 - -0.4 625,807 - -2.2 625,807 - +1.9 626,019 - AO353_02945 0.14 -0.2 626,027 + AO353_02945 0.15 -0.1 626,027 + AO353_02945 0.15 -1.7 626,027 + AO353_02945 0.15 -0.5 626,027 + AO353_02945 0.15 +1.2 626,027 + AO353_02945 0.15 -0.9 626,027 + AO353_02945 0.15 +0.3 626,027 + AO353_02945 0.15 -0.2 626,027 + AO353_02945 0.15 -0.1 626,028 - AO353_02945 0.15 -0.3 626,028 - AO353_02945 0.15 +1.3 626,028 - AO353_02945 0.15 -1.1 626,028 - AO353_02945 0.15 -1.7 626,028 - AO353_02945 0.15 -0.4 626,028 - AO353_02945 0.15 +0.3 626,109 + AO353_02945 0.21 +0.1 626,110 - AO353_02945 0.21 -2.4 626,157 + AO353_02945 0.24 -3.2 626,157 + AO353_02945 0.24 +0.5 626,158 - AO353_02945 0.24 -0.1 626,178 + AO353_02945 0.25 +0.9 626,235 + AO353_02945 0.29 +0.1 626,343 + AO353_02945 0.37 +0.6 626,344 - AO353_02945 0.37 -1.9 626,344 - AO353_02945 0.37 -1.4 626,484 - AO353_02945 0.47 -0.1 626,510 + AO353_02945 0.48 +0.3 626,511 - AO353_02945 0.48 -0.1 626,630 + AO353_02945 0.57 +0.9 626,630 + AO353_02945 0.57 -0.2
Or see this region's nucleotide sequence