Experiment: Doxycycline hyclate 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02680 and AO353_02685 are separated by 11 nucleotides AO353_02685 and AO353_02690 are separated by 8 nucleotides AO353_02690 and AO353_02695 are separated by 267 nucleotides AO353_02695 and AO353_02700 are separated by 256 nucleotides
AO353_02680: AO353_02680 - phosphoribosylaminoimidazole synthetase, at 570,072 to 571,130
_02680
AO353_02685: AO353_02685 - phosphoribosylglycinamide formyltransferase, at 571,142 to 571,792
_02685
AO353_02690: AO353_02690 - dehydrogenase, at 571,801 to 572,514
_02690
AO353_02695: AO353_02695 - hypothetical protein, at 572,782 to 572,970
_02695
AO353_02700: AO353_02700 - nucleoprotein/polynucleotide-associated enzyme, at 573,227 to 573,769
_02700
Position (kb) 571
572
573 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 571.496 kb on + strand, within AO353_02685 at 571.497 kb on - strand, within AO353_02685 at 571.497 kb on - strand, within AO353_02685 at 571.497 kb on - strand, within AO353_02685 at 571.497 kb on - strand, within AO353_02685 at 571.497 kb on - strand, within AO353_02685 at 571.507 kb on - strand, within AO353_02685 at 571.611 kb on + strand, within AO353_02685 at 571.612 kb on - strand, within AO353_02685 at 571.615 kb on - strand, within AO353_02685 at 571.683 kb on - strand, within AO353_02685 at 571.759 kb on - strand at 571.790 kb on + strand at 571.790 kb on + strand at 571.790 kb on + strand at 571.790 kb on + strand at 571.791 kb on - strand at 571.791 kb on - strand at 571.800 kb on + strand at 571.800 kb on + strand at 571.800 kb on + strand at 571.801 kb on - strand at 571.801 kb on - strand at 571.801 kb on - strand at 571.885 kb on + strand, within AO353_02690 at 571.885 kb on + strand, within AO353_02690 at 571.885 kb on + strand, within AO353_02690 at 571.885 kb on + strand, within AO353_02690 at 571.885 kb on + strand, within AO353_02690 at 571.885 kb on + strand, within AO353_02690 at 571.886 kb on - strand, within AO353_02690 at 572.053 kb on + strand, within AO353_02690 at 572.160 kb on - strand, within AO353_02690 at 572.194 kb on + strand, within AO353_02690 at 572.194 kb on + strand, within AO353_02690 at 572.194 kb on + strand, within AO353_02690 at 572.194 kb on + strand, within AO353_02690 at 572.195 kb on - strand, within AO353_02690 at 572.195 kb on - strand, within AO353_02690 at 572.195 kb on - strand, within AO353_02690 at 572.195 kb on - strand, within AO353_02690 at 572.195 kb on - strand, within AO353_02690 at 572.219 kb on + strand, within AO353_02690 at 572.220 kb on - strand, within AO353_02690 at 572.220 kb on - strand, within AO353_02690 at 572.220 kb on - strand, within AO353_02690 at 572.245 kb on + strand, within AO353_02690 at 572.245 kb on + strand, within AO353_02690 at 572.245 kb on + strand, within AO353_02690 at 572.246 kb on - strand, within AO353_02690 at 572.278 kb on + strand, within AO353_02690 at 572.278 kb on + strand, within AO353_02690 at 572.278 kb on + strand, within AO353_02690 at 572.278 kb on + strand, within AO353_02690 at 572.278 kb on + strand, within AO353_02690 at 572.278 kb on + strand, within AO353_02690 at 572.278 kb on + strand, within AO353_02690 at 572.279 kb on - strand, within AO353_02690 at 572.279 kb on - strand, within AO353_02690 at 572.279 kb on - strand, within AO353_02690 at 572.279 kb on - strand, within AO353_02690 at 572.279 kb on - strand, within AO353_02690 at 572.279 kb on - strand, within AO353_02690 at 572.413 kb on + strand, within AO353_02690 at 572.413 kb on + strand, within AO353_02690 at 572.413 kb on + strand, within AO353_02690 at 572.414 kb on - strand, within AO353_02690 at 572.414 kb on - strand, within AO353_02690 at 572.414 kb on - strand, within AO353_02690 at 572.414 kb on - strand, within AO353_02690 at 572.414 kb on - strand, within AO353_02690 at 572.414 kb on - strand, within AO353_02690 at 572.414 kb on - strand, within AO353_02690 at 572.458 kb on + strand at 572.458 kb on + strand at 572.458 kb on + strand at 572.458 kb on + strand at 572.458 kb on + strand at 572.458 kb on + strand at 572.459 kb on - strand at 572.459 kb on - strand at 572.459 kb on - strand at 572.459 kb on - strand at 572.459 kb on - strand at 572.512 kb on + strand at 572.512 kb on + strand at 572.512 kb on + strand at 572.513 kb on - strand at 572.513 kb on - strand at 572.513 kb on - strand at 572.513 kb on - strand at 572.513 kb on - strand at 572.704 kb on + strand at 572.704 kb on + strand at 572.726 kb on + strand at 572.726 kb on + strand at 572.726 kb on + strand at 572.727 kb on - strand at 572.728 kb on + strand at 572.728 kb on + strand at 572.728 kb on + strand at 572.729 kb on - strand at 572.729 kb on - strand at 572.729 kb on - strand at 572.729 kb on - strand at 572.729 kb on - strand at 572.729 kb on - strand at 572.729 kb on - strand at 572.729 kb on - strand at 572.729 kb on - strand at 572.789 kb on + strand at 572.789 kb on + strand at 572.789 kb on + strand at 572.789 kb on + strand at 572.789 kb on + strand at 572.789 kb on + strand at 572.790 kb on - strand at 572.795 kb on + strand at 572.795 kb on + strand at 572.817 kb on + strand, within AO353_02695 at 572.817 kb on + strand, within AO353_02695 at 572.817 kb on + strand, within AO353_02695 at 572.818 kb on - strand, within AO353_02695 at 572.818 kb on - strand, within AO353_02695 at 572.818 kb on - strand, within AO353_02695 at 572.818 kb on - strand, within AO353_02695 at 572.863 kb on + strand, within AO353_02695 at 572.863 kb on + strand, within AO353_02695 at 572.863 kb on + strand, within AO353_02695 at 572.864 kb on - strand, within AO353_02695 at 572.864 kb on - strand, within AO353_02695 at 572.864 kb on - strand, within AO353_02695 at 572.917 kb on + strand, within AO353_02695 at 572.917 kb on + strand, within AO353_02695 at 572.917 kb on + strand, within AO353_02695 at 572.917 kb on + strand, within AO353_02695 at 572.917 kb on + strand, within AO353_02695 at 572.917 kb on + strand, within AO353_02695 at 572.917 kb on + strand, within AO353_02695 at 572.917 kb on + strand, within AO353_02695 at 572.917 kb on + strand, within AO353_02695 at 572.917 kb on + strand, within AO353_02695 at 572.917 kb on + strand, within AO353_02695 at 572.918 kb on - strand, within AO353_02695 at 572.918 kb on - strand, within AO353_02695 at 572.918 kb on - strand, within AO353_02695 at 572.918 kb on - strand, within AO353_02695 at 572.968 kb on + strand at 572.968 kb on + strand at 573.023 kb on - strand at 573.023 kb on - strand at 573.023 kb on - strand at 573.023 kb on - strand at 573.169 kb on + strand at 573.169 kb on + strand at 573.169 kb on + strand at 573.169 kb on + strand at 573.169 kb on + strand at 573.169 kb on + strand at 573.228 kb on + strand at 573.228 kb on + strand at 573.228 kb on + strand at 573.229 kb on - strand at 573.229 kb on - strand at 573.256 kb on - strand at 573.256 kb on - strand at 573.256 kb on - strand at 573.256 kb on - strand at 573.256 kb on - strand at 573.317 kb on - strand, within AO353_02700 at 573.317 kb on - strand, within AO353_02700 at 573.317 kb on - strand, within AO353_02700 at 573.317 kb on - strand, within AO353_02700 at 573.317 kb on - strand, within AO353_02700 at 573.477 kb on + strand, within AO353_02700 at 573.477 kb on + strand, within AO353_02700 at 573.477 kb on + strand, within AO353_02700 at 573.477 kb on + strand, within AO353_02700 at 573.477 kb on + strand, within AO353_02700 at 573.478 kb on - strand, within AO353_02700 at 573.478 kb on - strand, within AO353_02700 at 573.478 kb on - strand, within AO353_02700 at 573.478 kb on - strand, within AO353_02700 at 573.478 kb on - strand, within AO353_02700 at 573.478 kb on - strand, within AO353_02700 at 573.478 kb on - strand, within AO353_02700 at 573.478 kb on - strand, within AO353_02700 at 573.478 kb on - strand, within AO353_02700 at 573.478 kb on - strand, within AO353_02700 at 573.480 kb on + strand, within AO353_02700 at 573.480 kb on + strand, within AO353_02700 at 573.481 kb on - strand, within AO353_02700 at 573.481 kb on - strand, within AO353_02700 at 573.481 kb on - strand, within AO353_02700 at 573.481 kb on - strand, within AO353_02700 at 573.481 kb on - strand, within AO353_02700 at 573.481 kb on - strand, within AO353_02700
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml remove 571,496 + AO353_02685 0.54 +1.1 571,497 - AO353_02685 0.55 +0.5 571,497 - AO353_02685 0.55 +0.5 571,497 - AO353_02685 0.55 +0.7 571,497 - AO353_02685 0.55 -0.1 571,497 - AO353_02685 0.55 +0.9 571,507 - AO353_02685 0.56 +0.6 571,611 + AO353_02685 0.72 +0.5 571,612 - AO353_02685 0.72 +0.6 571,615 - AO353_02685 0.73 +0.5 571,683 - AO353_02685 0.83 -0.6 571,759 - -1.4 571,790 + +1.1 571,790 + -0.9 571,790 + +0.6 571,790 + +1.2 571,791 - -2.3 571,791 - -1.4 571,800 + -1.1 571,800 + +0.5 571,800 + +1.7 571,801 - -1.7 571,801 - +0.9 571,801 - -1.1 571,885 + AO353_02690 0.12 -1.7 571,885 + AO353_02690 0.12 -0.7 571,885 + AO353_02690 0.12 -2.6 571,885 + AO353_02690 0.12 -1.4 571,885 + AO353_02690 0.12 -1.3 571,885 + AO353_02690 0.12 -0.7 571,886 - AO353_02690 0.12 +1.5 572,053 + AO353_02690 0.35 -2.4 572,160 - AO353_02690 0.50 -0.1 572,194 + AO353_02690 0.55 -3.4 572,194 + AO353_02690 0.55 -1.4 572,194 + AO353_02690 0.55 -2.3 572,194 + AO353_02690 0.55 -0.7 572,195 - AO353_02690 0.55 -0.7 572,195 - AO353_02690 0.55 -0.7 572,195 - AO353_02690 0.55 -0.7 572,195 - AO353_02690 0.55 -1.9 572,195 - AO353_02690 0.55 -2.2 572,219 + AO353_02690 0.59 -2.2 572,220 - AO353_02690 0.59 -1.4 572,220 - AO353_02690 0.59 -3.6 572,220 - AO353_02690 0.59 -2.4 572,245 + AO353_02690 0.62 -1.9 572,245 + AO353_02690 0.62 -3.5 572,245 + AO353_02690 0.62 -0.7 572,246 - AO353_02690 0.62 -1.6 572,278 + AO353_02690 0.67 -3.0 572,278 + AO353_02690 0.67 -0.7 572,278 + AO353_02690 0.67 -3.5 572,278 + AO353_02690 0.67 -2.3 572,278 + AO353_02690 0.67 +0.1 572,278 + AO353_02690 0.67 -2.6 572,278 + AO353_02690 0.67 -1.3 572,279 - AO353_02690 0.67 -1.9 572,279 - AO353_02690 0.67 -3.4 572,279 - AO353_02690 0.67 -1.3 572,279 - AO353_02690 0.67 -1.7 572,279 - AO353_02690 0.67 -0.7 572,279 - AO353_02690 0.67 -2.3 572,413 + AO353_02690 0.86 -0.1 572,413 + AO353_02690 0.86 -0.4 572,413 + AO353_02690 0.86 -0.4 572,414 - AO353_02690 0.86 -1.1 572,414 - AO353_02690 0.86 -0.1 572,414 - AO353_02690 0.86 -1.4 572,414 - AO353_02690 0.86 -0.9 572,414 - AO353_02690 0.86 -2.3 572,414 - AO353_02690 0.86 -1.4 572,414 - AO353_02690 0.86 -2.8 572,458 + -1.2 572,458 + -3.7 572,458 + -2.4 572,458 + -1.4 572,458 + -0.9 572,458 + -1.4 572,459 - -2.1 572,459 - -0.4 572,459 - -3.2 572,459 - -1.9 572,459 - -0.1 572,512 + -1.1 572,512 + +0.0 572,512 + -0.2 572,513 - +2.1 572,513 - -1.1 572,513 - +0.0 572,513 - -0.1 572,513 - +0.4 572,704 + +0.2 572,704 + +0.2 572,726 + +1.2 572,726 + -1.2 572,726 + -1.1 572,727 - -0.7 572,728 + +0.1 572,728 + -2.7 572,728 + +2.1 572,729 - -0.1 572,729 - +0.9 572,729 - -0.3 572,729 - +0.1 572,729 - +0.2 572,729 - -0.0 572,729 - +0.3 572,729 - +1.7 572,729 - +0.6 572,789 + -0.3 572,789 + -1.4 572,789 + +0.1 572,789 + +1.9 572,789 + +1.5 572,789 + +1.2 572,790 - +1.5 572,795 + -0.7 572,795 + -1.4 572,817 + AO353_02695 0.19 +1.0 572,817 + AO353_02695 0.19 +1.2 572,817 + AO353_02695 0.19 +0.0 572,818 - AO353_02695 0.19 +0.6 572,818 - AO353_02695 0.19 +2.5 572,818 - AO353_02695 0.19 +1.9 572,818 - AO353_02695 0.19 +0.0 572,863 + AO353_02695 0.43 -0.7 572,863 + AO353_02695 0.43 +0.1 572,863 + AO353_02695 0.43 +0.1 572,864 - AO353_02695 0.43 +0.9 572,864 - AO353_02695 0.43 -0.1 572,864 - AO353_02695 0.43 +0.5 572,917 + AO353_02695 0.71 +0.9 572,917 + AO353_02695 0.71 +1.2 572,917 + AO353_02695 0.71 -2.1 572,917 + AO353_02695 0.71 +0.3 572,917 + AO353_02695 0.71 +1.6 572,917 + AO353_02695 0.71 +1.1 572,917 + AO353_02695 0.71 -0.1 572,917 + AO353_02695 0.71 -0.1 572,917 + AO353_02695 0.71 +0.4 572,917 + AO353_02695 0.71 +0.4 572,917 + AO353_02695 0.71 -1.2 572,918 - AO353_02695 0.72 +0.3 572,918 - AO353_02695 0.72 -1.4 572,918 - AO353_02695 0.72 +1.4 572,918 - AO353_02695 0.72 -0.3 572,968 + +0.9 572,968 + +2.1 573,023 - -0.7 573,023 - +2.2 573,023 - -0.1 573,023 - +0.3 573,169 + -0.9 573,169 + -1.4 573,169 + -0.8 573,169 + -0.4 573,169 + -0.4 573,169 + -2.1 573,228 + +0.4 573,228 + +0.1 573,228 + -0.3 573,229 - +0.9 573,229 - +0.1 573,256 - -0.1 573,256 - +2.3 573,256 - +0.6 573,256 - -1.1 573,256 - +0.7 573,317 - AO353_02700 0.17 +0.1 573,317 - AO353_02700 0.17 +1.9 573,317 - AO353_02700 0.17 -2.1 573,317 - AO353_02700 0.17 +0.8 573,317 - AO353_02700 0.17 +0.9 573,477 + AO353_02700 0.46 +3.5 573,477 + AO353_02700 0.46 +1.3 573,477 + AO353_02700 0.46 +0.7 573,477 + AO353_02700 0.46 -1.1 573,477 + AO353_02700 0.46 +0.9 573,478 - AO353_02700 0.46 +0.3 573,478 - AO353_02700 0.46 +2.1 573,478 - AO353_02700 0.46 +0.9 573,478 - AO353_02700 0.46 +0.4 573,478 - AO353_02700 0.46 +1.9 573,478 - AO353_02700 0.46 +0.1 573,478 - AO353_02700 0.46 -0.7 573,478 - AO353_02700 0.46 +0.9 573,478 - AO353_02700 0.46 -0.1 573,478 - AO353_02700 0.46 +0.5 573,480 + AO353_02700 0.47 -0.3 573,480 + AO353_02700 0.47 -0.1 573,481 - AO353_02700 0.47 +0.9 573,481 - AO353_02700 0.47 -0.1 573,481 - AO353_02700 0.47 +1.5 573,481 - AO353_02700 0.47 +0.9 573,481 - AO353_02700 0.47 -0.9 573,481 - AO353_02700 0.47 +1.9
Or see this region's nucleotide sequence