Experiment: Doxycycline hyclate 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01475 and AO353_01480 are separated by 345 nucleotides AO353_01480 and AO353_01485 overlap by 4 nucleotides
AO353_01475: AO353_01475 - hypothetical protein, at 316,517 to 316,891
_01475
AO353_01480: AO353_01480 - hypothetical protein, at 317,237 to 318,016
_01480
AO353_01485: AO353_01485 - ABC transporter, at 318,013 to 318,945
_01485
Position (kb) 317
318
319 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 316.275 kb on + strand at 316.275 kb on + strand at 316.276 kb on - strand at 316.276 kb on - strand at 316.276 kb on - strand at 316.368 kb on + strand at 316.368 kb on + strand at 316.374 kb on + strand at 316.374 kb on + strand at 316.375 kb on - strand at 316.375 kb on - strand at 316.389 kb on - strand at 316.455 kb on + strand at 316.456 kb on - strand at 316.456 kb on - strand at 316.509 kb on + strand at 316.509 kb on + strand at 316.509 kb on + strand at 316.510 kb on - strand at 316.510 kb on - strand at 316.510 kb on - strand at 316.510 kb on - strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.565 kb on + strand, within AO353_01475 at 316.565 kb on + strand, within AO353_01475 at 316.622 kb on + strand, within AO353_01475 at 316.622 kb on + strand, within AO353_01475 at 316.889 kb on + strand at 316.933 kb on - strand at 316.933 kb on - strand at 317.117 kb on + strand at 317.117 kb on + strand at 317.131 kb on + strand at 317.132 kb on - strand at 317.158 kb on + strand at 317.158 kb on + strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.161 kb on + strand at 317.161 kb on + strand at 317.162 kb on - strand at 317.162 kb on - strand at 317.162 kb on - strand at 317.162 kb on - strand at 317.162 kb on - strand at 317.162 kb on - strand at 317.238 kb on + strand at 317.238 kb on + strand at 317.238 kb on + strand at 317.238 kb on + strand at 317.239 kb on - strand at 317.239 kb on - strand at 317.239 kb on - strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.287 kb on - strand at 317.287 kb on - strand at 317.287 kb on - strand at 317.287 kb on - strand at 317.287 kb on - strand at 317.294 kb on + strand at 317.294 kb on + strand at 317.295 kb on - strand at 317.304 kb on - strand at 317.304 kb on - strand at 317.317 kb on + strand, within AO353_01480 at 317.443 kb on - strand, within AO353_01480 at 317.443 kb on - strand, within AO353_01480 at 317.443 kb on - strand, within AO353_01480 at 317.461 kb on - strand, within AO353_01480 at 317.461 kb on - strand, within AO353_01480 at 317.461 kb on - strand, within AO353_01480 at 317.585 kb on - strand, within AO353_01480 at 317.682 kb on + strand, within AO353_01480 at 317.683 kb on - strand, within AO353_01480 at 317.782 kb on - strand, within AO353_01480 at 317.826 kb on + strand, within AO353_01480 at 317.826 kb on + strand, within AO353_01480 at 317.826 kb on + strand, within AO353_01480 at 317.826 kb on + strand, within AO353_01480 at 317.826 kb on + strand, within AO353_01480 at 317.826 kb on + strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.833 kb on + strand, within AO353_01480 at 317.833 kb on + strand, within AO353_01480 at 317.834 kb on - strand, within AO353_01480 at 317.834 kb on - strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.851 kb on + strand, within AO353_01480 at 317.878 kb on + strand, within AO353_01480 at 317.895 kb on + strand, within AO353_01480 at 317.895 kb on + strand, within AO353_01480 at 317.896 kb on - strand, within AO353_01480 at 317.896 kb on - strand, within AO353_01480 at 317.947 kb on + strand at 317.977 kb on + strand at 317.977 kb on + strand at 318.016 kb on + strand at 318.017 kb on - strand at 318.017 kb on - strand at 318.282 kb on + strand, within AO353_01485 at 318.362 kb on + strand, within AO353_01485 at 318.363 kb on - strand, within AO353_01485 at 318.363 kb on - strand, within AO353_01485 at 318.363 kb on - strand, within AO353_01485 at 318.587 kb on + strand, within AO353_01485 at 318.587 kb on + strand, within AO353_01485 at 318.587 kb on + strand, within AO353_01485 at 318.588 kb on - strand, within AO353_01485 at 318.588 kb on - strand, within AO353_01485 at 318.588 kb on - strand, within AO353_01485 at 318.588 kb on - strand, within AO353_01485 at 318.588 kb on - strand, within AO353_01485 at 318.629 kb on + strand, within AO353_01485 at 318.629 kb on + strand, within AO353_01485 at 318.632 kb on + strand, within AO353_01485 at 318.652 kb on + strand, within AO353_01485 at 318.652 kb on + strand, within AO353_01485 at 318.652 kb on + strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.756 kb on + strand, within AO353_01485 at 318.756 kb on + strand, within AO353_01485 at 318.756 kb on + strand, within AO353_01485 at 318.756 kb on + strand, within AO353_01485 at 318.756 kb on + strand, within AO353_01485 at 318.757 kb on - strand, within AO353_01485 at 318.757 kb on - strand, within AO353_01485 at 318.905 kb on + strand at 318.905 kb on + strand at 318.906 kb on - strand at 318.906 kb on - strand at 318.906 kb on - strand at 318.954 kb on + strand at 318.955 kb on - strand at 318.955 kb on - strand at 318.980 kb on + strand at 318.980 kb on + strand at 318.980 kb on + strand at 318.980 kb on + strand at 318.984 kb on + strand at 318.984 kb on + strand at 318.984 kb on + strand at 318.984 kb on + strand at 318.984 kb on + strand at 318.984 kb on + strand at 318.985 kb on - strand at 318.985 kb on - strand at 318.985 kb on - strand at 318.985 kb on - strand at 318.985 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml remove 316,275 + -0.0 316,275 + +0.1 316,276 - +1.1 316,276 - +0.2 316,276 - -0.6 316,368 + -2.5 316,368 + -0.3 316,374 + -0.2 316,374 + +1.0 316,375 - -0.0 316,375 - +0.8 316,389 - -0.4 316,455 + -0.1 316,456 - -2.5 316,456 - -0.2 316,509 + -0.5 316,509 + +0.1 316,509 + -0.6 316,510 - +0.5 316,510 - -1.4 316,510 - -1.2 316,510 - +0.4 316,513 + +1.5 316,513 + +0.1 316,513 + -0.4 316,513 + +0.1 316,513 + -0.4 316,513 + +0.4 316,513 + -1.4 316,513 + +0.2 316,513 + +0.4 316,513 + +1.0 316,513 + -0.8 316,513 + +0.3 316,513 + +0.4 316,513 + -1.2 316,513 + -1.0 316,514 - -2.0 316,514 - +0.8 316,514 - +0.8 316,514 - +0.1 316,514 - -0.0 316,514 - +1.5 316,514 - +2.1 316,514 - +0.8 316,514 - +1.4 316,514 - -1.0 316,565 + AO353_01475 0.13 +0.1 316,565 + AO353_01475 0.13 +0.1 316,622 + AO353_01475 0.28 +2.1 316,622 + AO353_01475 0.28 +1.1 316,889 + +0.5 316,933 - -0.2 316,933 - +0.4 317,117 + +0.8 317,117 + -0.6 317,131 + +1.2 317,132 - -1.4 317,158 + -0.8 317,158 + -0.1 317,159 - -0.8 317,159 - -0.6 317,159 - +0.4 317,159 - -0.7 317,159 - +0.4 317,159 - -0.4 317,161 + +0.8 317,161 + +0.0 317,162 - -1.4 317,162 - +0.4 317,162 - +1.2 317,162 - -0.2 317,162 - -0.2 317,162 - +0.6 317,238 + -2.4 317,238 + -0.8 317,238 + -0.3 317,238 + +0.1 317,239 - +1.1 317,239 - +0.8 317,239 - +0.9 317,286 + -0.0 317,286 + +2.8 317,286 + -1.8 317,286 + +0.3 317,286 + +0.8 317,286 + +2.6 317,286 + +1.7 317,286 + +1.0 317,286 + -1.8 317,286 + -2.2 317,286 + -1.8 317,287 - +1.5 317,287 - +0.5 317,287 - +1.5 317,287 - -1.5 317,287 - +0.1 317,294 + -1.4 317,294 + +0.2 317,295 - +1.1 317,304 - -0.2 317,304 - -1.1 317,317 + AO353_01480 0.10 -1.2 317,443 - AO353_01480 0.26 +1.5 317,443 - AO353_01480 0.26 -3.1 317,443 - AO353_01480 0.26 +0.4 317,461 - AO353_01480 0.29 +2.2 317,461 - AO353_01480 0.29 +1.0 317,461 - AO353_01480 0.29 +1.8 317,585 - AO353_01480 0.45 -0.4 317,682 + AO353_01480 0.57 +0.8 317,683 - AO353_01480 0.57 +0.6 317,782 - AO353_01480 0.70 +2.1 317,826 + AO353_01480 0.76 +0.2 317,826 + AO353_01480 0.76 +1.4 317,826 + AO353_01480 0.76 +0.5 317,826 + AO353_01480 0.76 +1.5 317,826 + AO353_01480 0.76 +1.2 317,826 + AO353_01480 0.76 +0.3 317,827 - AO353_01480 0.76 +1.3 317,827 - AO353_01480 0.76 -0.5 317,827 - AO353_01480 0.76 +1.3 317,827 - AO353_01480 0.76 +0.5 317,827 - AO353_01480 0.76 -0.8 317,827 - AO353_01480 0.76 +1.8 317,827 - AO353_01480 0.76 +1.6 317,827 - AO353_01480 0.76 +0.4 317,827 - AO353_01480 0.76 +1.5 317,827 - AO353_01480 0.76 -0.4 317,833 + AO353_01480 0.76 +0.1 317,833 + AO353_01480 0.76 +1.8 317,834 - AO353_01480 0.77 -0.8 317,834 - AO353_01480 0.77 -1.5 317,835 + AO353_01480 0.77 -1.2 317,835 + AO353_01480 0.77 +2.4 317,835 + AO353_01480 0.77 -1.2 317,835 + AO353_01480 0.77 +1.2 317,835 + AO353_01480 0.77 +0.2 317,835 + AO353_01480 0.77 +0.5 317,835 + AO353_01480 0.77 +0.6 317,836 - AO353_01480 0.77 +0.8 317,836 - AO353_01480 0.77 +0.1 317,836 - AO353_01480 0.77 +0.3 317,836 - AO353_01480 0.77 +0.6 317,836 - AO353_01480 0.77 -0.1 317,836 - AO353_01480 0.77 -0.8 317,836 - AO353_01480 0.77 +1.5 317,836 - AO353_01480 0.77 +0.8 317,851 + AO353_01480 0.79 +0.8 317,878 + AO353_01480 0.82 -0.4 317,895 + AO353_01480 0.84 -0.3 317,895 + AO353_01480 0.84 +1.0 317,896 - AO353_01480 0.84 -0.2 317,896 - AO353_01480 0.84 +0.4 317,947 + +1.6 317,977 + +0.4 317,977 + +0.8 318,016 + +1.8 318,017 - +2.0 318,017 - -0.6 318,282 + AO353_01485 0.29 -1.2 318,362 + AO353_01485 0.37 -0.8 318,363 - AO353_01485 0.38 +1.3 318,363 - AO353_01485 0.38 -0.2 318,363 - AO353_01485 0.38 +0.1 318,587 + AO353_01485 0.62 +3.4 318,587 + AO353_01485 0.62 +1.1 318,587 + AO353_01485 0.62 -0.4 318,588 - AO353_01485 0.62 +0.8 318,588 - AO353_01485 0.62 +0.8 318,588 - AO353_01485 0.62 +0.4 318,588 - AO353_01485 0.62 +1.1 318,588 - AO353_01485 0.62 +1.5 318,629 + AO353_01485 0.66 +4.0 318,629 + AO353_01485 0.66 -0.1 318,632 + AO353_01485 0.66 +0.1 318,652 + AO353_01485 0.68 +1.4 318,652 + AO353_01485 0.68 +1.2 318,652 + AO353_01485 0.68 +2.9 318,653 - AO353_01485 0.69 +0.3 318,653 - AO353_01485 0.69 -0.6 318,653 - AO353_01485 0.69 -1.5 318,653 - AO353_01485 0.69 +1.5 318,653 - AO353_01485 0.69 +0.4 318,653 - AO353_01485 0.69 +0.8 318,653 - AO353_01485 0.69 +0.7 318,653 - AO353_01485 0.69 +1.8 318,756 + AO353_01485 0.80 +0.2 318,756 + AO353_01485 0.80 -1.2 318,756 + AO353_01485 0.80 -0.2 318,756 + AO353_01485 0.80 -1.2 318,756 + AO353_01485 0.80 +0.8 318,757 - AO353_01485 0.80 +0.6 318,757 - AO353_01485 0.80 -0.2 318,905 + -1.2 318,905 + +0.3 318,906 - -2.4 318,906 - -0.4 318,906 - +0.5 318,954 + +0.1 318,955 - +0.8 318,955 - +0.1 318,980 + +1.3 318,980 + +0.2 318,980 + +0.3 318,980 + -0.8 318,984 + +1.1 318,984 + -0.2 318,984 + -1.0 318,984 + +0.8 318,984 + -0.2 318,984 + -0.4 318,985 - -0.2 318,985 - +0.9 318,985 - -2.7 318,985 - +0.3 318,985 - -0.2
Or see this region's nucleotide sequence