Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00855

Experiment: Doxycycline hyclate 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00845 and AO353_00850 are separated by 26 nucleotidesAO353_00850 and AO353_00855 are separated by 84 nucleotidesAO353_00855 and AO353_00860 are separated by 100 nucleotides AO353_00845: AO353_00845 - CmaX protein, at 192,045 to 193,040 _00845 AO353_00850: AO353_00850 - ribonuclease activity regulator protein RraA, at 193,067 to 193,558 _00850 AO353_00855: AO353_00855 - Rieske iron-sulfur protein, at 193,643 to 193,942 _00855 AO353_00860: AO353_00860 - EstX protein, at 194,043 to 195,032 _00860 Position (kb) 193 194Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 192.673 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.866 kb on + strand, within AO353_00845at 192.867 kb on - strand, within AO353_00845at 192.867 kb on - strand, within AO353_00845at 192.984 kb on - strandat 193.069 kb on - strandat 193.122 kb on + strand, within AO353_00850at 193.122 kb on + strand, within AO353_00850at 193.123 kb on - strand, within AO353_00850at 193.123 kb on - strand, within AO353_00850at 193.123 kb on - strand, within AO353_00850at 193.128 kb on + strand, within AO353_00850at 193.128 kb on + strand, within AO353_00850at 193.129 kb on - strand, within AO353_00850at 193.129 kb on - strand, within AO353_00850at 193.129 kb on - strand, within AO353_00850at 193.129 kb on - strand, within AO353_00850at 193.278 kb on + strand, within AO353_00850at 193.278 kb on + strand, within AO353_00850at 193.278 kb on + strand, within AO353_00850at 193.279 kb on - strand, within AO353_00850at 193.279 kb on - strand, within AO353_00850at 193.282 kb on + strand, within AO353_00850at 193.543 kb on + strandat 193.543 kb on + strandat 193.544 kb on - strandat 193.544 kb on - strandat 193.548 kb on + strandat 193.548 kb on + strandat 193.548 kb on + strandat 193.548 kb on + strandat 193.548 kb on + strandat 193.549 kb on - strandat 193.549 kb on - strandat 193.549 kb on - strandat 193.549 kb on - strandat 193.549 kb on - strandat 193.572 kb on + strandat 193.573 kb on - strandat 193.631 kb on + strandat 193.631 kb on + strandat 193.632 kb on - strandat 193.674 kb on + strand, within AO353_00855at 193.674 kb on + strand, within AO353_00855at 193.674 kb on + strand, within AO353_00855at 193.674 kb on + strand, within AO353_00855at 193.675 kb on - strand, within AO353_00855at 193.675 kb on - strand, within AO353_00855at 193.675 kb on - strand, within AO353_00855at 193.675 kb on - strand, within AO353_00855at 193.690 kb on + strand, within AO353_00855at 193.690 kb on + strand, within AO353_00855at 193.690 kb on + strand, within AO353_00855at 193.690 kb on + strand, within AO353_00855at 193.691 kb on - strand, within AO353_00855at 193.715 kb on + strand, within AO353_00855at 193.771 kb on + strand, within AO353_00855at 193.772 kb on - strand, within AO353_00855at 193.772 kb on - strand, within AO353_00855at 193.772 kb on - strand, within AO353_00855at 193.826 kb on + strand, within AO353_00855at 193.826 kb on + strand, within AO353_00855at 193.827 kb on - strand, within AO353_00855at 193.827 kb on - strand, within AO353_00855at 193.827 kb on - strand, within AO353_00855at 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.990 kb on + strandat 193.990 kb on + strandat 194.040 kb on + strandat 194.041 kb on - strandat 194.371 kb on + strand, within AO353_00860at 194.372 kb on - strand, within AO353_00860at 194.509 kb on + strand, within AO353_00860at 194.509 kb on + strand, within AO353_00860at 194.510 kb on - strand, within AO353_00860at 194.510 kb on - strand, within AO353_00860at 194.510 kb on - strand, within AO353_00860at 194.510 kb on - strand, within AO353_00860at 194.569 kb on + strand, within AO353_00860at 194.570 kb on - strand, within AO353_00860at 194.570 kb on - strand, within AO353_00860at 194.570 kb on - strand, within AO353_00860at 194.689 kb on + strand, within AO353_00860at 194.789 kb on - strand, within AO353_00860at 194.919 kb on + strand, within AO353_00860at 194.919 kb on + strand, within AO353_00860

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml
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192,673 - AO353_00845 0.63 +0.2
192,673 - AO353_00845 0.63 +0.4
192,673 - AO353_00845 0.63 -1.2
192,866 + AO353_00845 0.82 +0.8
192,867 - AO353_00845 0.83 -3.1
192,867 - AO353_00845 0.83 +0.5
192,984 - -2.5
193,069 - -0.8
193,122 + AO353_00850 0.11 -0.2
193,122 + AO353_00850 0.11 -2.0
193,123 - AO353_00850 0.11 +1.2
193,123 - AO353_00850 0.11 -1.0
193,123 - AO353_00850 0.11 +0.3
193,128 + AO353_00850 0.12 -0.2
193,128 + AO353_00850 0.12 +0.8
193,129 - AO353_00850 0.13 +1.8
193,129 - AO353_00850 0.13 +2.6
193,129 - AO353_00850 0.13 -0.2
193,129 - AO353_00850 0.13 -0.8
193,278 + AO353_00850 0.43 -1.5
193,278 + AO353_00850 0.43 -1.2
193,278 + AO353_00850 0.43 -1.2
193,279 - AO353_00850 0.43 +0.4
193,279 - AO353_00850 0.43 -0.5
193,282 + AO353_00850 0.44 -2.9
193,543 + +0.2
193,543 + -2.0
193,544 - +0.8
193,544 - -1.8
193,548 + -1.2
193,548 + -0.8
193,548 + -1.0
193,548 + +0.5
193,548 + -0.4
193,549 - +0.3
193,549 - +0.7
193,549 - -1.8
193,549 - -0.5
193,549 - -0.2
193,572 + -0.8
193,573 - -0.5
193,631 + -0.8
193,631 + -1.4
193,632 - +1.1
193,674 + AO353_00855 0.10 -1.2
193,674 + AO353_00855 0.10 -0.5
193,674 + AO353_00855 0.10 -1.1
193,674 + AO353_00855 0.10 -1.5
193,675 - AO353_00855 0.11 +0.4
193,675 - AO353_00855 0.11 +1.5
193,675 - AO353_00855 0.11 +0.8
193,675 - AO353_00855 0.11 +0.1
193,690 + AO353_00855 0.16 -0.8
193,690 + AO353_00855 0.16 -1.3
193,690 + AO353_00855 0.16 -1.9
193,690 + AO353_00855 0.16 -0.7
193,691 - AO353_00855 0.16 -1.8
193,715 + AO353_00855 0.24 -0.9
193,771 + AO353_00855 0.43 -2.0
193,772 - AO353_00855 0.43 +0.0
193,772 - AO353_00855 0.43 -0.4
193,772 - AO353_00855 0.43 -2.0
193,826 + AO353_00855 0.61 +0.5
193,826 + AO353_00855 0.61 -0.2
193,827 - AO353_00855 0.61 -2.0
193,827 - AO353_00855 0.61 -1.8
193,827 - AO353_00855 0.61 -1.2
193,942 + +0.4
193,942 + -1.8
193,942 + -2.0
193,942 + -1.8
193,942 + -1.5
193,942 + +0.3
193,942 + -0.5
193,942 + -1.8
193,943 - -0.5
193,943 - -1.8
193,943 - +1.5
193,943 - -0.5
193,943 - +0.4
193,943 - +0.2
193,943 - -1.0
193,943 - -0.4
193,943 - -0.2
193,943 - +0.1
193,943 - +0.3
193,943 - +0.7
193,990 + -1.4
193,990 + +1.8
194,040 + -1.2
194,041 - -0.6
194,371 + AO353_00860 0.33 -3.0
194,372 - AO353_00860 0.33 +0.8
194,509 + AO353_00860 0.47 -2.2
194,509 + AO353_00860 0.47 -1.2
194,510 - AO353_00860 0.47 +0.0
194,510 - AO353_00860 0.47 -1.5
194,510 - AO353_00860 0.47 +1.8
194,510 - AO353_00860 0.47 +0.8
194,569 + AO353_00860 0.53 -2.2
194,570 - AO353_00860 0.53 -1.0
194,570 - AO353_00860 0.53 -1.2
194,570 - AO353_00860 0.53 -0.6
194,689 + AO353_00860 0.65 -0.3
194,789 - AO353_00860 0.75 -1.1
194,919 + AO353_00860 0.88 -1.8
194,919 + AO353_00860 0.88 -1.8

Or see this region's nucleotide sequence