Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00820

Experiment: Doxycycline hyclate 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00815 and AO353_00820 are separated by 10 nucleotidesAO353_00820 and AO353_00825 are separated by 105 nucleotides AO353_00815: AO353_00815 - Nitrate reductase (EC 1.7.99.4) (from data), at 185,539 to 188,256 _00815 AO353_00820: AO353_00820 - uroporphyrin-III methyltransferase, at 188,267 to 189,040 _00820 AO353_00825: AO353_00825 - porin, at 189,146 to 190,120 _00825 Position (kb) 188 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 187.569 kb on + strand, within AO353_00815at 187.570 kb on - strand, within AO353_00815at 187.570 kb on - strand, within AO353_00815at 187.570 kb on - strand, within AO353_00815at 187.709 kb on + strand, within AO353_00815at 187.709 kb on + strand, within AO353_00815at 187.710 kb on - strand, within AO353_00815at 187.710 kb on - strand, within AO353_00815at 187.870 kb on + strand, within AO353_00815at 187.870 kb on + strand, within AO353_00815at 188.261 kb on + strandat 188.261 kb on + strandat 188.261 kb on + strandat 188.261 kb on + strandat 188.261 kb on + strandat 188.262 kb on - strandat 188.335 kb on - strandat 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.359 kb on - strand, within AO353_00820at 188.359 kb on - strand, within AO353_00820at 188.359 kb on - strand, within AO353_00820at 188.359 kb on - strand, within AO353_00820at 188.489 kb on + strand, within AO353_00820at 188.647 kb on + strand, within AO353_00820at 188.647 kb on + strand, within AO353_00820at 188.648 kb on - strand, within AO353_00820at 188.682 kb on + strand, within AO353_00820at 188.722 kb on + strand, within AO353_00820at 188.722 kb on + strand, within AO353_00820at 188.723 kb on - strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 189.007 kb on + strandat 189.008 kb on - strandat 189.008 kb on - strandat 189.038 kb on + strandat 189.038 kb on + strandat 189.038 kb on + strandat 189.038 kb on + strandat 189.038 kb on + strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.088 kb on - strandat 189.135 kb on + strandat 189.144 kb on - strandat 189.144 kb on - strandat 189.147 kb on + strandat 189.148 kb on - strandat 189.148 kb on - strandat 189.148 kb on - strandat 189.177 kb on - strandat 189.334 kb on - strand, within AO353_00825at 189.371 kb on + strand, within AO353_00825at 189.637 kb on - strand, within AO353_00825at 189.681 kb on + strand, within AO353_00825at 189.682 kb on - strand, within AO353_00825at 189.682 kb on - strand, within AO353_00825at 189.682 kb on - strand, within AO353_00825at 189.790 kb on - strand, within AO353_00825at 189.910 kb on - strand, within AO353_00825at 189.946 kb on - strand, within AO353_00825

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml
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187,569 + AO353_00815 0.75 -1.6
187,570 - AO353_00815 0.75 -0.2
187,570 - AO353_00815 0.75 +1.8
187,570 - AO353_00815 0.75 +1.2
187,709 + AO353_00815 0.80 -0.5
187,709 + AO353_00815 0.80 +0.8
187,710 - AO353_00815 0.80 -2.0
187,710 - AO353_00815 0.80 -1.2
187,870 + AO353_00815 0.86 -2.2
187,870 + AO353_00815 0.86 +0.3
188,261 + -0.5
188,261 + -0.8
188,261 + +0.8
188,261 + -0.2
188,261 + -0.8
188,262 - -2.5
188,335 - +0.1
188,358 + AO353_00820 0.12 -2.2
188,358 + AO353_00820 0.12 -0.9
188,358 + AO353_00820 0.12 -0.0
188,358 + AO353_00820 0.12 -1.1
188,358 + AO353_00820 0.12 -0.4
188,358 + AO353_00820 0.12 -1.2
188,358 + AO353_00820 0.12 +0.2
188,358 + AO353_00820 0.12 -0.4
188,358 + AO353_00820 0.12 -1.8
188,358 + AO353_00820 0.12 -0.1
188,359 - AO353_00820 0.12 -1.0
188,359 - AO353_00820 0.12 -0.4
188,359 - AO353_00820 0.12 -1.3
188,359 - AO353_00820 0.12 -0.4
188,489 + AO353_00820 0.29 -2.4
188,647 + AO353_00820 0.49 -0.2
188,647 + AO353_00820 0.49 +2.4
188,648 - AO353_00820 0.49 -1.2
188,682 + AO353_00820 0.54 -0.1
188,722 + AO353_00820 0.59 +0.0
188,722 + AO353_00820 0.59 -0.8
188,723 - AO353_00820 0.59 +1.2
188,765 + AO353_00820 0.64 +2.7
188,765 + AO353_00820 0.64 +0.2
188,765 + AO353_00820 0.64 -0.6
188,765 + AO353_00820 0.64 -2.9
188,765 + AO353_00820 0.64 -1.8
188,765 + AO353_00820 0.64 -2.0
188,766 - AO353_00820 0.64 -2.0
188,766 - AO353_00820 0.64 +0.4
188,766 - AO353_00820 0.64 -2.0
188,766 - AO353_00820 0.64 -1.2
188,766 - AO353_00820 0.64 -2.0
189,007 + -2.0
189,008 - -0.2
189,008 - -1.5
189,038 + -0.9
189,038 + -1.8
189,038 + -0.6
189,038 + -1.8
189,038 + -3.6
189,039 - -0.5
189,039 - -1.8
189,039 - -2.2
189,039 - -1.0
189,039 - -2.8
189,039 - -1.2
189,088 - +0.2
189,135 + -0.8
189,144 - -2.0
189,144 - -2.5
189,147 + -2.0
189,148 - -1.8
189,148 - +1.4
189,148 - -1.5
189,177 - -1.2
189,334 - AO353_00825 0.19 +1.3
189,371 + AO353_00825 0.23 -1.5
189,637 - AO353_00825 0.50 -1.5
189,681 + AO353_00825 0.55 -2.5
189,682 - AO353_00825 0.55 +1.4
189,682 - AO353_00825 0.55 -1.8
189,682 - AO353_00825 0.55 -3.3
189,790 - AO353_00825 0.66 -0.8
189,910 - AO353_00825 0.78 -0.2
189,946 - AO353_00825 0.82 -1.5

Or see this region's nucleotide sequence